Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0112100 | OGI:04001850 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:692896-695278 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TATTCGTCCACGTCATCTCGAATAAAATTTTTAACCCATGGTTAAATCTGAGAGTTATTCATGAAATTTTTTTTACTGCCACTCTAGGTGACATGGATAAATCTCATACATTCATTTTTATGCTAATATTAGTTTCTAAGTTGTCACTGTATATGTGGTTTGCACTTTATATTTTTCCCCATCTAACAAGTCCCGTAGAACCAAATTCAGCAGAGGTCGTTAAGCGTGATGACCACCGAGCAGTGACACTTGCGCTATGCTGTTGGTCTTGCCTTTCCCCTTGATACCTAGTACCACTTGCTTAAGACCATTCCCACCTACATAAAAGATTAGAAACTGTTCAGCTCTGAATGATTGAATGAAGTTAAAAGCAGCACTATTCTCGTCCTATGATAACAAAAGAAACAGAGAGGAAAACACATCTAGATGAAGGGTTAATGTCGGGCAAAGTCTGTACCTTGAGTTTAAACGATTTCTAGTCGCTGGATGGAGCGAATCCTTTCCCAGGCAGCGCCAGTCCTGCCTTGTAGCTTCTTCATAAGAAGAGGATGGCATCCGTTAAACTCGAGGGATTTCAAGGATGCCATCATAGGCATGGCATCATCGGGGAAGTCATGAAGTTCAGGGCAATCAGATATCTCTAGTCTCTCGAGGGACTGCAGTTTATGCAGGCACATGCTCAAACTCCTGTCTGTCACAGGACATCGGGTTAACGACAGGCTCCTAACAGAAGCAAGGAGGTTGAGGTTTGGCTCAGTCGACCATGTGTAGTGCTCGATTCTGATTGAACCGATTGCCTTTATGTGATCCGGATGCAGGAAATCTTCATGCAGCAGATGGACAGCATCCGCACGGATATCCAAGGTAAAAGAAATCATGTGTTCCCTCGTTCCCCTTGTTTGAAGGGGGCAAGGACATCCTCCCATTCCTTCCTGCTCCGCTGATGATCGTCGTCGTCCGACTCATCGTTGCAGACATCGTCGAGGACGAGCAGGTACCTCTGGGATGACAGAGACACCAGCCTGACGAACTCCGCCTGAAGGGCACCAAAGCTCATCTGGTCGGCGCACCTGTGTGTAGCCGCAGTAGCAGTAGCACCCGGTCCGGACATCCAGATCTCAGCCAAGAGGTCCTTGTTCCTGTACTTGTGTGGGACGCTCGCCCAGATCACATGATCAAACCTTGCTTGAACGTCCACGTGCCTCAGCGCGTGCTGAGCAAGCGCAGTCTTGCCAACGCCGCCGTCGCCGACGACCGCCACGACTTGACCGCCGCCATTGCCATTGCCACCAGGCCGCCGGGGAGGATCGTACAGCAAGGCCGACACCAGCCGATCGTACTCCTCCTTGTAACCGTAGAGTTTGCCGTCCGGCAATAGGCCCGTGGCCGATCTTGGCCTCGACGCGGACGCACCCCCATCTCCTCCTCCTTGTGATGACCGGAAATTTGACAGCTGGACAAGATCCCGCTGGTTCTGCTGCATCCGTGGCAGGTCATTCATCGACTTGTCCAGCCGGTTCAACGCGCCGTCTATTCCGACTATCCGCTTAGCTTGTTCAACTATAGAATGGATAACCTGCCTGACCTTGTGCTTCCTCGCCCAGATACTGTCTCTGTAGTCGACGGCGTCCAAGATGTCCTCAGCCTCGTGGATGGCGTCCATCAGCTCACTCAGTTGCCCCACGATCCGACGGTCGCTCATGAACTGTTCCTGTTCCTCCACCGTGTCCACGGCCACTGCGATCTTCCCCACTTCACCCACCAGCTGTGCAACGTCCTTTCTGTAATCTCTCAAGCGTCTGTACTTCCTCGCCACAAAGGATTCCGCGATTTCGGCGATCTTGATGCCCGGCGAAATCGCCGGCCCAACCGTCGAAATTGCTCCAATCGGCATGCCTAGCCGCCGCCTCTCTCCCTCTCTGTGTACAAAGAAAACAACAGCTAGCAGAGATAATTAAGAATGATGAACTACGAACTACAAAGTGATATGTTTAATTAGTTGTACAAGATGATCCGACCGATTGATCTACCTGTCGACACACAAGGCCAATCTGCAATCAGCGATCGATATATGATTGATGCAGTACAGCCTGGCTGGTGATGCTCGTGCAAGATCAATCACACCACACGACCACTACTACTGTGGGAGATCTAGCTGCAGCCTGCTATGACATATGATCGATCCTAGCTTCCAATGGCACCAGCATCGCCGACGAGATCAAAGGCGACAAAATTAAAGAAGAGTCCTTAATTAGCAAATGAACAAGTAAATAAATGGTGGAGGAGCAAAGTGAAGGGGATGAGCGCCTACCGTCCAAAGTGTGCAGGTCGGCCCCGTGGGGTCGTCAAAACTCAAAACAAGTCAAAAAGATAGGAGCCAGCC
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| CDS seq | ATGCCGATTGGAGCAATTTCGACGGTTGGGCCGGCGATTTCGCCGGGCATCAAGATCGCCGAAATCGCGGAATCCTTTGTGGCGAGGAAGTACAGACGCTTGAGAGATTACAGAAAGGACGTTGCACAGCTGGTGGGTGAAGTGGGGAAGATCGCAGTGGCCGTGGACACGGTGGAGGAACAGGAACAGTTCATGAGCGACCGTCGGATCGTGGGGCAACTGAGTGAGCTGATGGACGCCATCCACGAGGCTGAGGACATCTTGGACGCCGTCGACTACAGAGACAGTATCTGGGCGAGGAAGCACAAGGTCAGGCAGGTTATCCATTCTATAGTTGAACAAGCTAAGCGGATAGTCGGAATAGACGGCGCGTTGAACCGGCTGGACAAGTCGATGAATGACCTGCCACGGATGCAGCAGAACCAGCGGGATCTTGTCCAGCTGTCAAATTTCCGGTCATCACAAGGAGGAGGAGATGGGGGTGCGTCCGCGTCGAGGCCAAGATCGGCCACGGGCCTATTGCCGGACGGCAAACTCTACGGTTACAAGGAGGAGTACGATCGGCTGGTGTCGGCCTTGCTGTACGATCCTCCCCGGCGGCCTGGTGGCAATGGCAATGGCGGCGGTCAAGTCGTGGCGGTCGTCGGCGACGGCGGCGTTGGCAAGACTGCGCTTGCTCAGCACGCGCTGAGGCACGTGGACGTTCAAGCAAGGTTTGATCATGTGATCTGGGCGAGCGTCCCACACAAGTACAGGAACAAGGACCTCTTGGCTGAGATCTGGATGTCCGGACCGGGTGCTACTGCTACTGCGGCTACACACAGGTGCGCCGACCAGATGAGCTTTGGTGCCCTTCAGGCGGAGTTCGTCAGGCTGGTGTCTCTGTCATCCCAGAGGTACCTGCTCGTCCTCGACGATGTCTGCAACGATGAGTCGGACGACGACGATCATCAGCGGAGCAGGAAGGAATGGGAGGATGTCCTTGCCCCCTTCAAACAAGGGGAACGAGGGAACACATGA
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| Protein seq | MPIGAISTVGPAISPGIKIAEIAESFVARKYRRLRDYRKDVAQLVGEVGKIAVAVDTVEEQEQFMSDRRIVGQLSELMDAIHEAEDILDAVDYRDSIWARKHKVRQVIHSIVEQAKRIVGIDGALNRLDKSMNDLPRMQQNQRDLVQLSNFRSSQGGGDGGASASRPRSATGLLPDGKLYGYKEEYDRLVSALLYDPPRRPGGNGNGGGQVVAVVGDGGVGKTALAQHALRHVDVQARFDHVIWASVPHKYRNKDLLAEIWMSGPGATATAATHRCADQMSFGALQAEFVRLVSLSSQRYLLVLDDVCNDESDDDDHQRSRKEWEDVLAPFKQGERGNT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0112100 | OsNip_04t0112100-01 | Chr04 | 692896 | 695278 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCGATTGGAGCAATTTCGACGGTTGGGCCGGCGATTTCGCCGGGCATCAAGATCGCCGAAATCGCGGAATCCTTTGTGGCGAGGAAGTACAGACGCTTGAGAGATTACAGAAAGGACGTTGCACAGCTGGTGGGTGAAGTGGGGAAGATCGCAGTGGCCGTGGACACGGTGGAGGAACAGGAACAGTTCATGAGCGACCGTCGGATCGTGGGGCAACTGAGTGAGCTGATGGACGCCATCCACGAGGCTGAGGACATCTTGGACGCCGTCGACTACAGAGACAGTATCTGGGCGAGGAAGCACAAGGTCAGGCAGGTTATCCATTCTATAGTTGAACAAGCTAAGCGGATAGTCGGAATAGACGGCGCGTTGAACCGGCTGGACAAGTCGATGAATGACCTGCCACGGATGCAGCAGAACCAGCGGGATCTTGTCCAGCTGTCAAATTTCCGGTCATCACAAGGAGGAGGAGATGGGGGTGCGTCCGCGTCGAGGCCAAGATCGGCCACGGGCCTATTGCCGGACGGCAAACTCTACGGTTACAAGGAGGAGTACGATCGGCTGGTGTCGGCCTTGCTGTACGATCCTCCCCGGCGGCCTGGTGGCAATGGCAATGGCGGCGGTCAAGTCGTGGCGGTCGTCGGCGACGGCGGCGTTGGCAAGACTGCGCTTGCTCAGCACGCGCTGAGGCACGTGGACGTTCAAGCAAGGTTTGATCATGTGATCTGGGCGAGCGTCCCACACAAGTACAGGAACAAGGACCTCTTGGCTGAGATCTGGATGTCCGGACCGGGTGCTACTGCTACTGCGGCTACACACAGGTGCGCCGACCAGATGAGCTTTGGTGCCCTTCAGGCGGAGTTCGTCAGGCTGGTGTCTCTGTCATCCCAGAGGTACCTGCTCGTCCTCGACGATGTCTGCAACGATGAGTCGGACGACGACGATCATCAGCGGAGCAGGAAGGAATGGGAGGATGTCCTTGCCCCCTTCAAACAAGGGGAACGAGGGAACACATGA
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| Protein seq | MPIGAISTVGPAISPGIKIAEIAESFVARKYRRLRDYRKDVAQLVGEVGKIAVAVDTVEEQEQFMSDRRIVGQLSELMDAIHEAEDILDAVDYRDSIWARKHKVRQVIHSIVEQAKRIVGIDGALNRLDKSMNDLPRMQQNQRDLVQLSNFRSSQGGGDGGASASRPRSATGLLPDGKLYGYKEEYDRLVSALLYDPPRRPGGNGNGGGQVVAVVGDGGVGKTALAQHALRHVDVQARFDHVIWASVPHKYRNKDLLAEIWMSGPGATATAATHRCADQMSFGALQAEFVRLVSLSSQRYLLVLDDVCNDESDDDDHQRSRKEWEDVLAPFKQGERGNT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.526747 | 0.875333 | 0.279886 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02120 | RBH | 0.361539 | 0.553431 | 0.067728 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0112100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000580 | RBH | 0.138142 | 1.473816 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000610 | RBH | 0.598731 | 2.234470 | 2.531422 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000580 | RBH | 0.354799 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000650 | RBH | 0.029909 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000570 | RBH | 0.000000 | 0.000000 | 5.813252 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0010000 | RBH | 29.190267 | 67.9693185 | 86.659172 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000590 | RBH | 0.081581 | 0.000000 | 0.008141 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0012900 | RBH | 0.890556 | 1.8376555 | 0.1586335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000580 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000590 | RBH | 0.077310 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000590 | SBH | 8.402252 | 9.379689 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000560 | RBH | 0.076819 | 0.268384 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000570 | RBH | 0.545067 | 5.267883 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000590 | RBH | 0.860602 | 2.352899 | 2.680830 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000560 | RBH | 0.271259 | 1.636026 | 0.0 |
