Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0001130 | OGI:04005190 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:1453342-1455163 | ||||||||
| Gene Symbol | OsSub38, SUB38 | ||||||||||
| DNA seq | ctggctgatgggctgcctcaaaagacagcagatccattcgactatagtggtggcttcattgatccaaacatagccgttgatcctggccttgcagatgatgttgactcagaagattatactacattccttgattgttattcagctggcaactcaagctgtgaatctgaatccagaaatctaaaccttccatcaattgcgatttcaaatctgacagcaccaacaactgtgctaagaacagtgacaaatgttggccaagcagatgcagtttacaaggctgttgtgcaatctcctcctggcgttcagatatcagtggaaccaaccgttctaaaattcagccaaggcaagaatacacagagcttcaagatcacattcaccatgacccacaagcttcatgggggctacctgtttgggagcctagcatggtctgatggtggtgctcatcatgtcaggattccaattgcggttcgaccggtggtatccgataattatacagatctttgatgaagcatacaactacaggatgtttatacttcggaaggttctatggagcaggcctcgtcctattttagtccctcaaagttgagtttgtcagccttgccaaaactgttgtaccgttttatatgttttctgttttattgtttgtaatttgtgattccactacactatgagatatctcctatcgtatggacattggtctgaaataataatggaataaatgagggacatattcgtgtgtactccttaaccaacactaaaagtaaaggagggacatatccgtgtggctcctctcacattagtatctggtcatgcctagggtaaaatggtttgtcaagttgaaaaggagtagttctaaacataaagttgaaaaggagtagcccttttaagtgaacatttcaaccgaattaccgagaaccaaatagtacttttgtctctttctttttttttttaagtgagtagagggtaccatgatgaacatttggtgtaaattgttggaaactaccacaagcaaacggttttgctactgggcgagcgatcgcccgaggcgatcagggcagatccccccttcctccacgtaggttcttttttggcaccgcattatttttctaTtttagtaaatttatgcacctaaagtttgtacaccttaaatttacacatctaaagtttatacacctaaagtttagaaatccaaaatttataagtcaaaagttcatatatcctatgcaaatttaaatttgaattcaaatatttttatatatagtatttctatacatctaaagtttataaacccaaagtttataagtcaaaaatttatatacccgattcaaatttgaatttgaattatatccgattcaaatttgaactggaattcaaataTttttttatatatagtatttctatgcatctaaagtttatacacctaaattttatagacccaaagcttataagtcaaaagtttacatacctgattcaaatttaaatttaaatttaaatatttttTAtatatagtattttctatacataaatttttcaactttattattttcatttttttttaaatttatagtgtaataggaagagaagaaagggaggaggaaggaagagagtagggttacattgggggatggggggtgatcgcgcggagcggtcaccctcccattagccacccccacaagcaaatcaacttccaaaagatttgcatgtctgacatatctggtttgcaatattttacattgtttcgttttcttgttcgcattttgtacaggaaaatgccaataatagtacagacaggtctgtgtcagtgtcaccccagaaggcgctttga
More
|
||||||||||
| CDS seq | atgacccacaagcttcatgggggctacctgtttgggagcctagcatggtctgatggtggtgctcatcatgtcaggattccaattgcggttcgaccggtggaaaatgccaataatagtacagacaggtctgtgtcagtgtcaccccagaaggcgctttga |
||||||||||
| Protein seq | MTHKLHGGYLFGSLAWSDGGAHHVRIPIAVRPVENANNSTDRSVSVSPQKAL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0001130 | OsLima_04g0001130.01 | Chr04 | 1453342 | 1455163 | + | NAM | ||
| CDS seq | atgacccacaagcttcatgggggctacctgtttgggagcctagcatggtctgatggtggtgctcatcatgtcaggattccaattgcggttcgaccggtggaaaatgccaataatagtacagacaggtctgtgtcagtgtcaccccagaaggcgctttga |
|||||||
| Protein seq | MTHKLHGGYLFGSLAWSDGGAHHVRIPIAVRPVENANNSTDRSVSVSPQKAL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0127300 | SBH | 0.200248 | 0.359491 | 0.364703 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g03810 | SBH | 0.110967 | 0.229411 | 0.080768 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0127300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001110 | SBH | 0.135130 | 2.416801 | 0.651734 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001140 | SBH | 0.0 | 0.0 | 0.144493 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001150 | SBH | 0.121354 | 0.000000 | 2.362240 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001210 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001160 | SBH | 1.832482 | 1.355214 | 3.115292 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0027900 | SBH | 1.427744 | 0.0559445 | 0.1931925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001330 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0024100 | SBH | 2.2369375 | 0.413918 | 3.1201365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001310 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001100 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001280 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001070 | SBH | 0.102419 | 0.0 | 0.128318 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001270 | SBH | 0.958776 | 6.000744 | 1.733422 |
