Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0001080 | OGI:04004650 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:1389652-1397113 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatacaccttcgccttcgtctccggcatcatcatcgcctggggactggagaagaagccaccgcgtgcctccaattccgctgtagtcgaccgtcgccgtcgtctcagcaccatcaacaacggcaatgctgaagatcactcaccagcatcgtcgacgaaggtctccaccagagagtcgtcgacgatggagaggagatcggcggcgaaggttgggctatggggtggatccggtggctggccgttcgacattcgtccgtcggcgaccgtccctcgccggctgaacagcatcaccttgtaccaccccgatggcgccatccactccttgtactacgactactatatgaaatcacaacggcgaggaggtggtggtgatgaactcaagctcgtcaaggacggtccatgggggcaacgatattcctataattccattgcagtccatgacacggtactagtaattaattaactactcccttattattatatcttattaatagtaataggttttgattttggttttcaaactattttttaagggttgaccgaccaggtggaaaaacatagccatacttttagtatgtaaaacaaacatatatcaaattaagtattttcaatattagttttaataaatcaatttggtgttgtagagatgttgctaaattattctacatatttgatctaacatagaaaacggtgtgagtagcttctctgtgatattttacttcttttttatctatatatatccattatattggtggatatatatacgcggccagttttcgactaactcttgaaatcaactgccaagtttagcatccaattaagttgcattttcatgccagatccttcatctttttaagtccttgcactagatgaatatgaaaaattatcaacttaattgtaattaacgatcgattgcagatcaagttgtcggcggatgaacaggtgacttgggtggagggcaccatcgggcgtttcagggacgtggatgagcctgtgattacctccctaaccttccggaccaacgccggcaagacatacggactgttggaaatggccaagatcggagacacacacaaacacgagagtgagtagcagagcttgtgaagcttgacaatggcaacgaatgccggcttttctctattttcactcgagtgatcaaacaacaggatgaacatgtgcttatataggcccagggtgacgcacaaatggagcacgaactccttccccggcctttgctcgcacgatccgcacgtcccggctcacgccatgcatgagcacaaactcagcgcacgacgccacgctctccaactgaacccgatacacacgtacgttcgcagctagctagcctgcgctaaactcggacgaacctccttgcaacggacgcgttaacaacaaACacacacacgacgcacgcactgacctgaacacacacggtcaggtttatttcctaacacggaccacacggccggggcggcgccggcgacaagcaagcaggcactccctttctcgatcccggttgacaatggcggcgtcgtggtcggattctggggacgagccggatggctcatcgatgccatcggagtctacattagcccaatctagttattagtttgttatatactccctccattttaatgtatatgacgccgatgacttattaaccaacatttgactattcgtattctttaaaatttttgtgcaaatataaaaatatttatgttatgctcaaagaacatttggtgataaattaagtcacaataaaataaattacataaaatttttacataagacgaatagtcaaacgttgattaaaaagtcaacgacgtcatacggtaaaattcagaggatactatatatgtgataatactaatactacatatacatgtattacatataaaaatgagtagttatcactacttaaaaaaggcactacatgtcgacactacaggtgctggaacagctaaaatcggcacctatactgtttttccaacctccacaagatgtataggtgtcgtttattttttaaaaaaaggtaccttgaatatataataggcgtttgtgccgtttattttttaaaataggtaccttaaatatataataggcgttggtggctctgcgggcggatccggtgggcggatacggtgatggcagcggcggaggcatttccaccgggcggatctggtcgtcctctaccccctccccctcaccctccgcgtccaagcttctcccgcggcgatgacggtggcattggcgctcccgctggcagatccggcagaggtggcggcggtggcgtttccggtgggcgaatctaatggtcgtctaccccctcccggccctccgccccaagcttctccggcagatctggtggcggcgagtggatctgcgggtgttgttgtttgtgttgtttgtattgctgtgtttatgtgatgatgttgttgctgtgattgattttttatttatttttttgggcggggggagcgggggaactggagctcgatgcagacctttttttttctttttcatccgggagatctcaaaggtgccactatctgtctattggaaaaaccggcacctatcgcgtactctatagcagtgtattaattctacattggtatgctatcgcaaaatctagctagcttttcatttagctagttgttttcatgctaaactgacccataccatccgtcaatagagttgagacgttaattatttaatatccctctgttttttattataaatcatttgactttttgtcacgaccctttttttttccgtgacagtctaccgtatccttgtacgtatacgcatatatactaatatttatatgtgtccataagatacaaggcaaaatgcaatatctaaccattacaactggagcttggacacctacaacagtggttccatttatttttttcaccagctacattgcatattttttttcattggatttttgcaggtgggccattgatcgatgattttcgccgtcgttgatctgcaggcggtcctcccatccgcctggaaaaatttcttttggccgcctgtaaaaatgctttttctagtagtaattgttgtctgattcattgtactatgaaatgtctcatccttgtctagattgtattttttttggggatggagggagtaagagtagtacagtacgtccatcagaatccgattcgaccgcggccacagaccaacccgacagcaaataatccggcctgttgttcccaataaatacacagtgctagctatgggctatggcaaaacaaaatcgcagcctctgctctggaattctcaataatccgattacaataataataactcgatcggtgcagtactgcagccttcagccatgggaaacgtcttctccgggatcagcgtggtgatcctcgtcatcgtatgcatctccctctacaccttcgccttcctcgccggcctcggcctcggccagaaattggagaggacgagcaagcgccgccatcgccggcgggatcaaccggccgccggagaagacgaagaagatgatcacggacgatcacgatcgacgacaggcagcagcagcaccggctgtagaaaccaccgccgccggcgactacaagctctactcatccgccatgatctaacaccctcatcatcgcgccatcatcaccacgacggcggcggcgagatcaagaccggtggtgacgcaggtcggggcatggggaggatgcggcgggcggccattcgacatgatcccgtccaccatccctcgccggctcaacagcatcgcgttgttccactccagtggcgccatccactccttgtacttcgactaccacatccaacagcagcaacatggaggacgtgatcgccatggtggtggacaactcaagctcatgaactatggtccatggggccaagcgtcttcctacaattccatagccgtccgtgatgaggtaatcaaccatccacacgtacgattatatataatcctcttaataataattaactcttgcacgcatgttaccaaagtttgttatagaaaaaaattagaacaatagatttaatatgatatatataacttcacaaatatgtaaggtagaagtcgatttctaaaaggttatAaaaacaaattaaactaaaattagttattcacacaactatatttgttatttttgttttagcttctggaagttgaatttaaattgcatgtttgtgaggtactccctccattttaggttataagacattttgattttggtcaaaccgctataactttgattaagtttgtagagaaaagtagtagcgttttaacacaagacaaatttattctgaaaatatattcaattattaatttgatgaaactaatttagtattataaatattattatatttgtctataaatttagtcaaaattaaaacagtttgactttggccaaagtcaaaacgtcttataacctgaaatagagggagtaatatatatcaatatctaTttttcttataaaagtataagtattttaagaaaccaaaggatgtgtcttctcgagagatgaaaacacttctcaaactagatgcatgatgaaattttatcaaaccttttcgatcgtctaaaaaaaagtttatcaaacctgtgctaattaattaaccttgtaaacgatatgaagatcaagttgtcggcgcgtgaacaggtgacagcggtggagggcacggttgggaatttcagggacgtggatgagccggtgatcacctccctcaccttctacaccaacgccggtaggaaatacgggccatacggcggcaacggcaagcaaggaactccattctccatcccggttggaaagggttgcgtcgtcgttggattctggggacgctgtggatggctcctcgatgccatcggggtctatgtcagtccccagagctaattaagctatatgatccatcgccagatcagtgtatatgtatatatatacgtatcacaattcacaactatcttttcaaaatgtatgtcattgtttacttttcgtgtaatgtttgaccgttcgtcttatttaaaaatttaatataactatgtaaaagtataagttatggttatcttatttgatgataaaacaagccataacaaaataaatatatttatatattttttttaataagacggatgatccaatgttataagaaaagtcaacgatatcatattttgaaatggagggagtacttgaagcaaggacgagaaataataagattaatctgaaaggtttttttttcccgaaaaatgtggacatgtgatttatttagaaatatattacttcttccgtcccagaatataataagttttagagttggacacggttattaagaaagtatgtagaagtgaatggtggagggttgtgattagatgagtagtggaggtaggtggaaaaaatgaatgctggagggtcgtgattggttgagaagagaatgttgatggagaagttgttatattttgggacaaatcctgagagctaaaagttattatattttgggacggagggagtacaagcgtaggcgttcacaacatgcggatactcaccctatgaacacgcacgcacttcaatggatacgacgcctaacactgaaaaaataattgatcgtaaatgcgagcacccatgtcaggtggctggttccatcacaagaaacctatctaagttgagttacgctcacttcccttatacatatgatttaattagttttataaaaaaaatatttgcagataaattacaaggcgatcagatgattgagaaacccaaacAaaaaaaaaaaactgtttgtttctttaggcttaacacttcctaaacaaacagcgcattagtcgattggattggagatggactaaccgggcaaacgtgaccggcccaatgtgtgttgggcctgcggttgcggcccactagggtaaaaactcgatcctcttgtcaacaacggcgtacgcgccgccactcatcaccctcagcttaattagctgcacaactaatcatcatcatcatctacttaatggactatagtagccaggagtctaccttgttgttgttccccggtttatctggatccaagatccgatcaaaaccaacgaaaactcgcaacgccatggaaatggtggaacgccgcttctcctggctcgccgtcgtcaccatcgacctcgtctccatctccgtctacacctgctccttcctcgccggcgtcgcccttggccgggccctggagaggaggaacaacctgcacccatcctccatcaatggcgccgtcgacgacgacaccgtacatacggatcgatcgagtctcaaattttcacaaattaaagatttgtctgatctcgagtacattgtgaattgcaggagttggccgtgttgccggggagaagatggtcgtcgttggtggggaagaaggttgggccatggggtggatccggtgggtggcatgatttcggcataggtggacgatcatcacgtagtagccctgttcttcctcggcagctgaatagcatcgtcttgtatcattctcgtggcgccatccattccttgtactacgactactacatccaaatccatccacaaaaactaggaagaggtcatgatgaactcaaacttgtcaagaacggtccttgggggcaaaAGtattccttcgattccatagctgtccgggaaatggtaattaattactacgtacctctgatttacattgtaaatcgttttcaatttgggttttgaatacataatttcttgcataaatctatgtatttatgttctttatataagtgtctaaattcatacgaatgttagtgaatctagacgagacatggagaggacttataatgtggaacagagggagtaacgatcgacaatttatcctccttgaaacatggaaaataacctgcgagctaattaagcattccattggcaccactgtcatgcctagatccttgcccatcatttaaatatgtcctcttaagtaaatatatgcatgaaaatttatcatcaggtactaacagaaagcttgtacagagaagtataatgagtaaaggtggatccgatgtattcagccttaggggatgctggtatataatagtatctcaattaattctaaataatatagctggaaactaatcctatataccataacaatcagattgtctttaatcctatcaatacactctaatatctatgcagtctaatcaatatatttgcatgcagatcaagctgttggatgatgaacaggtgactgcggtggagggcacatttgggcatttcagggatgtggttgagcctgtcatcacttccctcaccttccacaccaacgccggcaggacatacgggccttacggcggcggcggcgagccgggaagtggcacgcccttctccgttccggcggaggagggccgcatcatcgttggcttctggggacgcgctggatggctcctcgactccatcggtgtctatgtcagaagggaacgatga
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| CDS seq | atggagaggagatcggcggcgaaggttgggctatggggtggatccggtggctggccgttcgacattcgtccgtcggcgaccgtccctcgccggctgaacagcatcaccttgtaccaccccgatggcgccatccactccttgtactacgactactatatgaaatcacaacggcgaggaggtggtggtgatgaactcaagctcatcaagttgtcggcggatgaacaggtgacttgggtggagggcaccatcgggcgtttcagggacgtggatgagcctgtcggggcatggggaggatgcggcgggcggccattcgacatgatcccgtccaccatccctcgccggctcaacagcatcgcgttgttccactccagtggcgccatccactccttgtacttcgactaccacatccaacagcagcaacatggaggacgtgatcgccatggtggtggacaactcaagctcatgaactatggtccatggggccaagcgtcttcctacaattccatagccgtccgtgatgagatcaagttgtcggcgcgtgaacaggtgacagcggtggagggcacggttgggaatttcagggacgtggatgagccggtgatcacctccctcaccttctacaccaacgccggtaggaaatacgggccatacggcggcaacggcaagcaaggaactccattctccatcccggttggaaagggttgcgtcgtcgttggattctggggacgctgtggatggctcctcgatgccatcgggaggaggaacaacctgcacccatcctccatcaatggcgccgtcgacgacgacaccgagttggccgtgttgccggggagaagatggtcgtcgttggtggggaagaaggttgggccatggggtggatccggtgggtggcatgatttcggcataggtggacgatcatcacgtagtagccctgttcttcctcggcagctgaatagcatcgtcttgtatcattctcgtggcgccatccattccttgtactacgactactacatccaaatccatccacaaaaactaggaagaggtcatgatgaactcaaacttatcaagctgttggatgatgaacaggtgactgcggtggagggcacatttgggcatttcagggatgtggttgagcctgtcatcacttccctcaccttccacaccaacgccggcaggacatacgggccttacggcggcggcggcgagccgggaagtggcacgcccttctccgttccggcggaggagggccgcatcatcgttggcttctggggacgcgctggatggctcctcgactccatcggtgtctatgtcagaagggaacgatga
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| Protein seq | MERRSAAKVGLWGGSGGWPFDIRPSATVPRRLNSITLYHPDGAIHSLYYDYYMKSQRRGGGGDELKLIKLSADEQVTWVEGTIGRFRDVDEPVGAWGGCGGRPFDMIPSTIPRRLNSIALFHSSGAIHSLYFDYHIQQQQHGGRDRHGGGQLKLMNYGPWGQASSYNSIAVRDEIKLSAREQVTAVEGTVGNFRDVDEPVITSLTFYTNAGRKYGPYGGNGKQGTPFSIPVGKGCVVVGFWGRCGWLLDAIGRRNNLHPSSINGAVDDDTELAVLPGRRWSSLVGKKVGPWGGSGGWHDFGIGGRSSRSSPVLPRQLNSIVLYHSRGAIHSLYYDYYIQIHPQKLGRGHDELKLIKLLDDEQVTAVEGTFGHFRDVVEPVITSLTFHTNAGRTYGPYGGGGEPGSGTPFSVPAEEGRIIVGFWGRAGWLLDSIGVYVRRER |
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| Function | Mannose/glucose-specific lectin (Fragment) [UniProtKB/Swiss-Prot:P83304] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0001080 | OsLima_04g0001080.01 | Chr04 | 1389652 | 1397113 | + | NAM | ||
| CDS seq | atggagaggagatcggcggcgaaggttgggctatggggtggatccggtggctggccgttcgacattcgtccgtcggcgaccgtccctcgccggctgaacagcatcaccttgtaccaccccgatggcgccatccactccttgtactacgactactatatgaaatcacaacggcgaggaggtggtggtgatgaactcaagctcatcaagttgtcggcggatgaacaggtgacttgggtggagggcaccatcgggcgtttcagggacgtggatgagcctgtcggggcatggggaggatgcggcgggcggccattcgacatgatcccgtccaccatccctcgccggctcaacagcatcgcgttgttccactccagtggcgccatccactccttgtacttcgactaccacatccaacagcagcaacatggaggacgtgatcgccatggtggtggacaactcaagctcatgaactatggtccatggggccaagcgtcttcctacaattccatagccgtccgtgatgagatcaagttgtcggcgcgtgaacaggtgacagcggtggagggcacggttgggaatttcagggacgtggatgagccggtgatcacctccctcaccttctacaccaacgccggtaggaaatacgggccatacggcggcaacggcaagcaaggaactccattctccatcccggttggaaagggttgcgtcgtcgttggattctggggacgctgtggatggctcctcgatgccatcgggaggaggaacaacctgcacccatcctccatcaatggcgccgtcgacgacgacaccgagttggccgtgttgccggggagaagatggtcgtcgttggtggggaagaaggttgggccatggggtggatccggtgggtggcatgatttcggcataggtggacgatcatcacgtagtagccctgttcttcctcggcagctgaatagcatcgtcttgtatcattctcgtggcgccatccattccttgtactacgactactacatccaaatccatccacaaaaactaggaagaggtcatgatgaactcaaacttatcaagctgttggatgatgaacaggtgactgcggtggagggcacatttgggcatttcagggatgtggttgagcctgtcatcacttccctcaccttccacaccaacgccggcaggacatacgggccttacggcggcggcggcgagccgggaagtggcacgcccttctccgttccggcggaggagggccgcatcatcgttggcttctggggacgcgctggatggctcctcgactccatcggtgtctatgtcagaagggaacgatga
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| Protein seq | MERRSAAKVGLWGGSGGWPFDIRPSATVPRRLNSITLYHPDGAIHSLYYDYYMKSQRRGGGGDELKLIKLSADEQVTWVEGTIGRFRDVDEPVGAWGGCGGRPFDMIPSTIPRRLNSIALFHSSGAIHSLYFDYHIQQQQHGGRDRHGGGQLKLMNYGPWGQASSYNSIAVRDEIKLSAREQVTAVEGTVGNFRDVDEPVITSLTFYTNAGRKYGPYGGNGKQGTPFSIPVGKGCVVVGFWGRCGWLLDAIGRRNNLHPSSINGAVDDDTELAVLPGRRWSSLVGKKVGPWGGSGGWHDFGIGGRSSRSSPVLPRQLNSIVLYHSRGAIHSLYYDYYIQIHPQKLGRGHDELKLIKLLDDEQVTAVEGTFGHFRDVVEPVITSLTFHTNAGRTYGPYGGGGEPGSGTPFSVPAEEGRIIVGFWGRAGWLLDSIGVYVRRER
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0200400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g03360 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0200400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001060 | RBH | 0.0 | 0.0 | 5.200180 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001030 | RBH | 0.0 | 0.0 | 0.610739 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001090 | RBH | 0.0 | 0.000000 | 3.449867 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001100 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001090 | RBH | 0.0 | 0.0 | 20.757542 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0025600 | RBH | 0.014839 | 0 | 0.007721 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001210 | RBH | 0.0 | 0.0 | 1.967647 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0024400 | RBH | 0 | 0 | 0.003078 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001170 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001170 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001030 | RBH | 0.0 | 0.0 | 0.265949 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001200 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001170 | RBH | 0.0 | 0.0 | 0.901189 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001180 | RBH | 0.0 | 0.0 | 6.501612 |
