Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0000640 | OGI:04002600 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:906835-908643 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggtccactgcccagactggtGgaaatccaccacgccgcctcgagcggcgcaggcgctgcctctcctcgccccgtcgcgcggcgccggcgccggcgcctctcaccgcatccgcccgcgccgccgcctcctctcgccgcagatgtcgccgcagaagtcgccgccgccgccgcctcacgtcggatctgcacgtgccgtctcaccggatctgcgggcgccgcatccctttgttccccggtgccggcgcctcctcccttcctcccacggtgcacgacctcggcgcagccttctcttctccccacggcaaggtgagtcccttatttttctccatcattgctcgtgtggatgaagaaccttacgttttgctgccttccatccatgcaagattcgttgacacttctgtccaggcaccgtctcttccccaacaagaaccatgaactcggcatttctttcattgttagacgttacacgtttcttgcttcaaccatgcttcttattcgatttttaagagattttattgtcAaatatggtcttcggaaacacaatagctgtttgcaacatattaaagcaaaaaaaagaaatcactgggctaatagctggtcattattcttcatagagcttgtgtcagggatgagcagacTAGtagtattatttagtactaaatttccttgttacagaatttcattgccctcttatttattagattaacaattgacttatgatcaaatatattggATatctcgattttatgaaaatttcctaattcactgttgcaatataattgtaataatgtttgctacaaaggagggaacagctttatacattgtccaatggtgtacttttggaagcagtgtgttatctttgatcagtcaccgggttgcatttcttcattcagttctatgacagtagactatatctgggtgtagcatggagtgtttgtatttgttgatggtttttatgcaaagctgtcaagtccttgtttttaataaagaaacatTAtctgtcatgatgagtgctgtatgcatgaacaatactcctatttcctcttgtgtgtagtacaaaaatgtgttcaagagctaatcgtcggaagcGggaggaagaggatgacgatatgattcttttccttttccctgctctgcatcttttactatgtgctaattcatgggattgggatgaattggatgcactactacttggaatgtgtaaaaatttcgatcaatctctgtaggtctagtcatagatagatcgatgtcatttcctgtacggagtaaatactcaggagcccccctcagcctctttgtgctttgccatgaactcattataagcttgagcactgatcctattttgctaatgatgctatactgctaatgtgatctacttatatttatatatatttctatacAaatagttcccttctgacgtcgattgttcaaggaaatgctcttctactgatgtatatttcctccctgtaattctgctactttttatactatagttctattcatagcatggattaatgcctaatgcagagcactgacgataactcatttttcactcgcagcaggtaatggagctactgatagccttgcagtaatgccttctgctcttgcacttacggagaatttggatttttgggactcttactttctgtttgtatgaaatgaatgtaattagttttcagtggcttatcctagctgattgtggtgatgaaTatgatgtttaaatgagtaaatcatgtattgtgaatgggtgactgattgtggtgactgaatggatatgatgcaagcaatttttagaacattctatgcgg
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| CDS seq | atggtccactgcccagactggtGgaaatccaccacgccgcctcgagcggcgcaggcgctgcctctcctcgccccgtcgcgcggcgccggcgccggcgcctctcaccgcatccgcccgcgccgccgcctcctctcgccgcagatgtcgccgcagaagtcgccgccgccgccgcctcacgtcggatctgcacgtgccgtctcaccggatctgcgggcgccgcatccctttgttccccggtgccggcgcctcctcccttcctcccacggtgcacgacctcggcgcagccttctcttctccccacggcaagattcgttgacacttctgtccaggcaccgtctcttccccaacaagaaccatgaactcggcatttctttcattcaggtaatggagctactgatagccttgcagtaa
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| Protein seq | MVHCPDWWKSTTPPRAAQALPLLAPSRGAGAGASHRIRPRRRLLSPQMSPQKSPPPPPHVGSARAVSPDLRAPHPFVPRCRRLLPSSHGARPRRSLLFSPRQDSLTLLSRHRLFPNKNHELGISFIQVMELLIALQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0000640 | OsLima_04g0000640.02 | Chr04 | 906835 | 908636 | + | NAM | ||
| CDS seq | atggtccactgcccagactggtGgaaatccaccacgccgcctcgagcggcgcaggcgctgcctctcctcgccccgtcgcgcggcgccggcgccggcgcctctcaccgcatccgcccgcgccgccgcctcctctcgccgcagatgtcgccgcagaagtcgccgccgccgccgcctcacgtcggatctgcacgtgccgtctcaccggatctgcgggcgccgcatccctttgttccccggtgccggcgcctcctcccttcctcccacggtgcacgacctcggcgcagccttctcttctccccacggcaagattcgttgacacttctgtccaggcaccgtctcttccccaacaagaaccatgaactcggcatttctttcattcaggtaatggagctactgatagccttgcagtaa
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| Protein seq | MVHCPDWWKSTTPPRAAQALPLLAPSRGAGAGASHRIRPRRRLLSPQMSPQKSPPPPPHVGSARAVSPDLRAPHPFVPRCRRLLPSSHGARPRRSLLFSPRQDSLTLLSRHRLFPNKNHELGISFIQVMELLIALQ |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0000640 | OsLima_04g0000640.01 | Chr04 | 906835 | 908643 | + | NAM | ||
| CDS seq | atggtccactgcccagactggtGgaaatccaccacgccgcctcgagcggcgcaggcgctgcctctcctcgccccgtcgcgcggcgccggcgccggcgcctctcaccgcatccgcccgcgccgccgcctcctctcgccgcagatgtcgccgcagaagtcgccgccgccgccgcctcacgtcggatctgcacgtgccgtctcaccggatctgcgggcgccgcatccctttgttccccggtgccggcgcctcctcccttcctcccacggtgcacgacctcggcgcagccttctcttctccccacggcaaggtaatggagctactgatagccttgcagtaatgccttctgctcttgcacttacggagaatttggatttttgggactcttactttctgtttgtatga
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| Protein seq | MVHCPDWWKSTTPPRAAQALPLLAPSRGAGAGASHRIRPRRRLLSPQMSPQKSPPPPPHVGSARAVSPDLRAPHPFVPRCRRLLPSSHGARPRRSLLFSPRQGNGATDSLAVMPSALALTENLDFWDSYFLFV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0000640 | OsLima_04g0000640.03 | Chr04 | 906865 | 908636 | + | IsoSeq | ||
| CDS seq | ccacgccgcctcgagcggcgcaggcgctgcctctcctcgccccgtcgcgcggcgccggcgccggcgcctctcaccgcatccgcccgcgccgccgcctcctctcgccgcagatgtcgccgcagaagtcgccgccgccgccgcctcacgtcggatctgcacgtgccgtctcaccggatctgcgggcgccgcatccctttgttccccggtgccggcgcctcctcccttcctcccacggtgcacgacctcggcgcagccttctcttctccccacggcaagcaggtaatggagctactgatagccttg
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| Protein seq | PRRLERRRRCLSSPRRAAPAPAPLTASARAAASSRRRCRRRSRRRRRLTSDLHVPSHRICGRRIPLFPGAGASSLPPTVHDLGAAFSSPHGKQVMELLIAL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 907141 | 908398 | + | OsLima_04g0000640.03 | OsLima_04g0000640.01,OsLima_04g0000640.03 | All |
| SE | Chr04 | 907141 | 908395 | + | OsLima_04g0000640.02 | OsLima_04g0000640.03,OsLima_04g0000640.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.159623 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0113800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000630 | RBH | 3.783070 | 16.298330 | 10.795289 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000640 | RBH | 3.067094 | 10.237039 | 14.291322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000630 | RBH | 12.192694 | 0.0 | 11.823883 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000650 | RBH | 0.874245 | 0.580099 | 1.376093 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0015000 | RBH | 1.978041 | 6.096054 | 9.764396 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000660 | RBH | 8.151320 | 22.019682 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000620 | RBH | 0.000000 | 0.000000 | 1.083531 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000630 | RBH | 0.898152 | 4.794842 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000630 | RBH | 3.033526 | 21.416792 | 15.451045 |
