Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_04g0000660 | OGI:04002600 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr04:923218-925058 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggtccactgcccagactggtggaaatccaccacgccgcctcgagcggcgcaggcgctgcctctcctcgacccgtcgcgcggcgccggcgccggcgcctctcaccgcatccgcccgcgccgccgcctcctctcgccgcagatgtcgccgccgcctcctgtcgccgcagaagtcgccgccgccgccgcctcacgtcggatctgcacgtgccgtctcaccggatctgcgggcgccgcatccctttgttccccggtgccggcgcctcctcccttcctcccacggtgcacgacctcggcgcagccttctcttctccccacggcaaggtgagtcccttatttttctccatcattgctcgtgtggatgaagaaccttacgttttgctgccttccatccatgcaagattcgttgacacttctgtccaggcaccgtctcttccccaacaagaaccatgaactcggcatttctttcattgttagacgttacacgcttcttgcttcaaccatgcttcttattcgatttttaagagattttattgtcaaatatggtcttcggaaacacaatagctgtttgcaacatattaaagcaaaaaaaagaaatcactgggctaatagctggtcattattcttcatagagcttgtgtcagggatgagcagactagtagtattatttagtactaaatttccttgttacagaatttcattgccctcttatttattagattaacaattgacttatgatcaaatatattggatatctcgattttatgaaaatttcctaattcactgttgcaatataattgtaataatgtttgctacaaaggagggaacagctttatacattgtccaatggtgtacttttggaagcagtgtgttatctttgatcagtcaccgggttgcatttcttcattcagttctatgacagtagactatatctgggtgtagcatggagtgtttgtatttgttgatggtttttatgcaaagctgtcaagtccttgtttttaataaagaaacattatctgtcatgatgagtgctgtatgcatgaacaatactcctatttcctcttgtgtgtagtacaaaaatgtgttcaagagctaatcgtcggaagcgggaggaagaggatgacgatatgattcttttccttttccctgctctgcatcttttactatgtgctaattcatgggattgggatgaattggatgcactactacttggaatgtgtaaaaatttcgatcaatctctgtaggtctagtcatagatagatcgatgtcatttcctgtacggagtaaatactcaggagcccccctcagcctctttgtgctttgccatgaactcagtataagcttgagcactgatcctattttgctaatgatgctatactgctaatgtgatctacttatatttatatatatttctatacaaatagttcccttctgacgtcgattgttcaaggaaatgctcttctactgatgtatatttcctccctgtaattctgctactttttatactatagttctattcatagcatggattaatgcctaatgcagagcactgacgataactcatttttcactcgcagcaggtaatggagctactgatagccttgcagtaatgccttctgctcttgcacttacggagaatttggatttttgggactcttactttctgtttgtatgaaatgaatgtaattagttttcagtggcttatcctagctgattgtggtgatgaatatgatgtttaaatgagtaaatcatgtattgtgaatgggtgactgattgtggtgactgaatggatatgatgcaagcaatttttagaacattctatgcggtattcagaattttcat
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| CDS seq | atggtccactgcccagactggtggaaatccaccacgccgcctcgagcggcgcaggcgctgcctctcctcgacccgtcgcgcggcgccggcgccggcgcctctcaccgcatccgcccgcgccgccgcctcctctcgccgcagatgtcgccgccgcctcctgtcgccgcagaagtcgccgccgccgccgcctcacgtcggatctgcacgtgccgtctcaccggatctgcgggcgccgcatccctttgttccccggtgccggcgcctcctcccttcctcccacggtgcacgacctcggcgcagccttctcttctccccacggcaagattcgttgacacttctgtccaggcaccgtctcttccccaacaagaaccatga |
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| Protein seq | MVHCPDWWKSTTPPRAAQALPLLDPSRGAGAGASHRIRPRRRLLSPQMSPPPPVAAEVAAAAASRRICTCRLTGSAGAASLCSPVPAPPPFLPRCTTSAQPSLLPTARFVDTSVQAPSLPQQEP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0000660 | OsGoSa_04g0000660.02 | Chr04 | 923218 | 925035 | + | NAM | ||
| CDS seq | atggtccactgcccagactggtggaaatccaccacgccgcctcgagcggcgcaggcgctgcctctcctcgacccgtcgcgcggcgccggcgccggcgcctctcaccgcatccgcccgcgccgccgcctcctctcgccgcagatgtcgccgccgcctcctgtcgccgcagaagtcgccgccgccgccgcctcacgtcggatctgcacgtgccgtctcaccggatctgcgggcgccgcatccctttgttccccggtgccggcgcctcctcccttcctcccacggtgcacgacctcggcgcagccttctcttctccccacggcaagattcgttgacacttctgtccaggcaccgtctcttccccaacaagaaccatga
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| Protein seq | MVHCPDWWKSTTPPRAAQALPLLDPSRGAGAGASHRIRPRRRLLSPQMSPPPPVAAEVAAAAASRRICTCRLTGSAGAASLCSPVPAPPPFLPRCTTSAQPSLLPTARFVDTSVQAPSLPQQEP |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0000660 | OsGoSa_04g0000660.01 | Chr04 | 923218 | 925042 | + | NAM | ||
| CDS seq | atggtccactgcccagactggtggaaatccaccacgccgcctcgagcggcgcaggcgctgcctctcctcgacccgtcgcgcggcgccggcgccggcgcctctcaccgcatccgcccgcgccgccgcctcctctcgccgcagatgtcgccgccgcctcctgtcgccgcagaagtcgccgccgccgccgcctcacgtcggatctgcacgtgccgtctcaccggatctgcgggcgccgcatccctttgttccccggtgccggcgcctcctcccttcctcccacggtgcacgacctcggcgcagccttctcttctccccacggcaaggtaa
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| Protein seq | MVHCPDWWKSTTPPRAAQALPLLDPSRGAGAGASHRIRPRRRLLSPQMSPPPPVAAEVAAAAASRRICTCRLTGSAGAASLCSPVPAPPPFLPRCTTSAQPSLLPTAR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0000660 | OsGoSa_04g0000660.03 | Chr04 | 923228 | 925058 | + | IsoSeq | ||
| CDS seq | cccagactggtggaaatccaccacgccgcctcgagcggcgcaggcgctgcctctcctcgacccgtcgcgcggcgccggcgccggcgcctctcaccgcatccgcccgcgccgccgcctcctctcgccgcagatgtcgccgccgcctcctgtcgccgcagaagtcgccgccgccgccgcctcacgtcggatctgcacgtgccgtctcaccggatctgcgggcgccgcatccctttgttccccggtgccggcgcctcctcccttcctcccacggtgcacgacctcggcgcagccttctcttctccccacggcaagcaggtaatggagctactgatagccttg
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| Protein seq | PRLVEIHHAASSGAGAASPRPVARRRRRRLSPHPPAPPPPLAADVAAASCRRRSRRRRRLTSDLHVPSHRICGRRIPLFPGAGASSLPPTVHDLGAAFSSPHGKQVMELLIAL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 923540 | 924797 | + | OsGoSa_04g0000660.03 | OsGoSa_04g0000660.01,OsGoSa_04g0000660.03 | All |
| SE | Chr04 | 923540 | 924794 | + | OsGoSa_04g0000660.02 | OsGoSa_04g0000660.03,OsGoSa_04g0000660.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.151320 | 22.019682 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0113800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000630 | RBH | 3.783070 | 16.298330 | 10.795289 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000640 | RBH | 3.067094 | 10.237039 | 14.291322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000630 | RBH | 12.192694 | 0.0 | 11.823883 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000650 | RBH | 0.874245 | 0.580099 | 1.376093 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0015000 | RBH | 1.978041 | 6.096054 | 9.764396 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000640 | RBH | 0.159623 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000660 | RBH | 0.000000 | 28.459200 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000620 | RBH | 0.000000 | 0.000000 | 1.083531 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000630 | RBH | 0.898152 | 4.794842 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000670 | RBH | 1.463098 | 3.395514 | 3.013847 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000630 | RBH | 3.033526 | 21.416792 | 15.451045 |
