Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0041350 | OGI:03098790 | 3/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:38444717-38445661 | ||||||||
| Gene Symbol | NAC78, ONAC078, ONAC78 | ||||||||||
| DNA seq | tcaagaactcgtcgagccaagaatgtcgtcgagcgtttctccggcagccaggcgcgcgaagacctcgccatccatgcaaggtccgttcgccgtctggatgaactcgtctccgccgccgccgccgccgtcgacaagctccgtcgtcggagcccacggcaaaggctcgtcgttcaacagatacctcatgtattgttccgtggcggccgtgctgaacgtgctctccaggttctcgtccatcggcgccgacagcagcgcgtccaggtccaactccggcaggagctccgatgactgctcgtcgtgctcgctcccggcctcctcttgccgcggcagcgcgctgggcggcggcgcctccgggtgatccacgccgtcgtccgccttcctcttggagccggagcactttgccgccgccgtgcgcgcctccgcgcagaccgcgcgcggcgagcggtagaccttgcagagcacctgcttgtctgctccgtcggtggcgtcgtcgtcgaggccgtactcggtcatgcaccacccaagcctcgtgaagctgcgtgccgaccccgacgacgacgacgactcgtagacgccataggagaacttctggaggtacccgacgcggcggccatcggcgccgatcacggccttcttgccgccctccgacttccacacgctctcgccgccgaccgcgcgctgccgcctcccggaggccttgcgcttgctggtgtagcgcggggagcagaagaagtaccagacgctgccgctcccatgggttcccggcgccggtctgtgctcgccgacgagctccgccggatcggcggagtagacgtcggcgtggttgatgaggcggtgctcgaaggggatcttggcgatcttggggcggaggaagagggtgatgaggccgtcgtcggaagggcggaaggcgtagcctggctccagagcgatctcgtcgtcgtccat
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| CDS seq | atggacgacgacgagatcgctctggagccaggctacgccttccgcccttccgacgacggcctcatcaccctcttcctccgccccaagatcgccaagatccccttcgagcaccgcctcatcaaccacgccgacgtctactccgccgatccggcggagctcgtcggcgagcacagaccggcgccgggaacccatgggagcggcagcgtctggtacttcttctgctccccgcgctacaccagcaagcgcaaggcctccgggaggcggcagcgcgcggtcggcggcgagagcgtgtggaagtcggagggcggcaagaaggccgtgatcggcgccgatggccgccgcgtcgggtacctccagaagttctcctatggcgtctacgagtcgtcgtcgtcgtcggggtcggcacgcagcttcacgaggcttgggtggtgcatgaccgagtacggcctcgacgacgacgccaccgacggagcagacaagcaggtgctctgcaaggtctaccgctcgccgcgcgcggtctgcgcggaggcgcgcacggcggcggcaaagtgctccggctccaagaggaaggcggacgacggcgtggatcacccggaggcgccgccgcccagcgcgctgccgcggcaagaggaggccgggagcgagcacgacgagcagtcatcggagctcctgccggagttggacctggacgcgctgctgtcggcgccgatggacgagaacctggagagcacgttcagcacggccgccacggaacaatacatgaggtatctgttgaacgacgagcctttgccgtgggctccgacgacggagcttgtcgacggcggcggcggcggcggagacgagttcatccagacggcgaacggaccttgcatggatggcgaggtcttcgcgcgcctggctgccggagaaacgctcgacgacattcttggctcgacgagttcttga
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| Protein seq | MDDDEIALEPGYAFRPSDDGLITLFLRPKIAKIPFEHRLINHADVYSADPAELVGEHRPAPGTHGSGSVWYFFCSPRYTSKRKASGRRQRAVGGESVWKSEGGKKAVIGADGRRVGYLQKFSYGVYESSSSSGSARSFTRLGWCMTEYGLDDDATDGADKQVLCKVYRSPRAVCAEARTAAAKCSGSKRKADDGVDHPEAPPPSALPRQEEAGSEHDEQSSELLPELDLDALLSAPMDENLESTFSTAATEQYMRYLLNDEPLPWAPTTELVDGGGGGGDEFIQTANGPCMDGEVFARLAAGETLDDILGSTSS |
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| Function | NAC domain-containing protein 72 [UniProtKB/Swiss-Prot:Q93VY3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0041350 | OsLima_03g0041350.01 | Chr03 | 38444717 | 38445661 | - | NAM | ||
| CDS seq | atggacgacgacgagatcgctctggagccaggctacgccttccgcccttccgacgacggcctcatcaccctcttcctccgccccaagatcgccaagatccccttcgagcaccgcctcatcaaccacgccgacgtctactccgccgatccggcggagctcgtcggcgagcacagaccggcgccgggaacccatgggagcggcagcgtctggtacttcttctgctccccgcgctacaccagcaagcgcaaggcctccgggaggcggcagcgcgcggtcggcggcgagagcgtgtggaagtcggagggcggcaagaaggccgtgatcggcgccgatggccgccgcgtcgggtacctccagaagttctcctatggcgtctacgagtcgtcgtcgtcgtcggggtcggcacgcagcttcacgaggcttgggtggtgcatgaccgagtacggcctcgacgacgacgccaccgacggagcagacaagcaggtgctctgcaaggtctaccgctcgccgcgcgcggtctgcgcggaggcgcgcacggcggcggcaaagtgctccggctccaagaggaaggcggacgacggcgtggatcacccggaggcgccgccgcccagcgcgctgccgcggcaagaggaggccgggagcgagcacgacgagcagtcatcggagctcctgccggagttggacctggacgcgctgctgtcggcgccgatggacgagaacctggagagcacgttcagcacggccgccacggaacaatacatgaggtatctgttgaacgacgagcctttgccgtgggctccgacgacggagcttgtcgacggcggcggcggcggcggagacgagttcatccagacggcgaacggaccttgcatggatggcgaggtcttcgcgcgcctggctgccggagaaacgctcgacgacattcttggctcgacgagttcttga
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| Protein seq | MDDDEIALEPGYAFRPSDDGLITLFLRPKIAKIPFEHRLINHADVYSADPAELVGEHRPAPGTHGSGSVWYFFCSPRYTSKRKASGRRQRAVGGESVWKSEGGKKAVIGADGRRVGYLQKFSYGVYESSSSSGSARSFTRLGWCMTEYGLDDDATDGADKQVLCKVYRSPRAVCAEARTAAAKCSGSKRKADDGVDHPEAPPPSALPRQEEAGSEHDEQSSELLPELDLDALLSAPMDENLESTFSTAATEQYMRYLLNDEPLPWAPTTELVDGGGGGGDEFIQTANGPCMDGEVFARLAAGETLDDILGSTSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0777000 | SBH | 0.633956 | 0.667374 | 1.664865 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g62440 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0815100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0041530 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0041230 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0041290 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0041520 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0041050 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0604000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0040790 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0606400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0040460 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0041280 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0040980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0041040 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0041080 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G040850 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0040550 | RBH | 0.0 | 0.0 | 0.0 |
