Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0037640 | OGI:03092330 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:36070328-36074865 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agtgaacgctgggactgctagtccTtggtcttttgcctgctccccgtttccagctgaatcgttggagACacacctgtccgttgatgcctgcagctacctcatgcttctgccagccacccgtgagtgatgtgcagcgcagggcAagccAgcaattgtactagtacaagttacagtagaatcagaggatatatacttgcactaggcctcactggtcagtatactgtaataaggttctcttgttgtttattatccgttctgttcttgagttcgtcagtcatctgagcaagattttctttgctattccagtcggtgactgcctaagctaggtaaggtgcagttgattagatttgttgtttggttcttgtgaaatggtagtagtgatgtgcatgagtgttcttcagttaacatgattgtttttttttgtcttgttactgtcaGttcaagaatggatcAagctggcaagaaatgtgatctttgatgatcActtcctcttcctgagaTGATttGgttactttctggtactatcaacacacatcaaagccttgattCctctgttgctggtacacactgtccttgatcgtagtagaaggagaaggtgaaggaatcatcagagtacagagattaaTttcttGcagtacagattgatttgctctgcttctctgctggttcttgctgatcaagaagcatttgatgagagcttctccaatggcgggtgcaagCcatcacctggtcgtcttcttggcagcgctgctcgcgttgctcccgggaagctcgcagctgcagtactcgcagacatggacgctgttcaagatccagcagatgctgaaccaCccgccggtgctgagccactggcgccggaccaccgacttctgcggcggcggcggcacggcggcgccgtcggcggccgtggtgtgctacggcgacacggtgacgcAgcTacacatcgccggcgtccgcggcgcgccgccgctcccgatgaacttctccAtcggcgcgctcgtcatggcgctgtcgaggctccccGacctcaaggtgctcacgctgtccgggctcgggctctggggccccctgccggacaagatcggccgcctcgccgcgctggagatcgtcaacatgagcggcaactacctctacggcggcgtccccggcgggctgtcccagctcaccggcctccagacgctgatcctcgacgacaacctgctcgccggcgagCTcccggcgtggatcggcgagctgccgcagctggccgtgctgagcctgcggaacAactcgctgggcggcgccgtgccGGcgtccgtgggtcgcatggagtcgctgaggtcgctggtgctcgcgtcgaacaacctgacggggaacctgccggacatgagcggcctcaccaacctccaggtgatcgacgtcggcgacaactggctcggcccggcgttcccggcgctGgggcggaaggtggtcacggtggtgctcagccggaacaggttcaccggcggcctccccggcgagatcacctccttctAcctgctcgagcggctcgacgtgtcgtggaaccgcttcgtcggcccgttcatgccggcgctgctgtccctgccggCcatccgctacctcaacgtcgccggcaacaggttcaccggcgtgctctccgacaaggttgcctgcggcgacaatctccagttcgtcgacctgtcctccaacctcctcaccggcagcgagccggcctgcctgaggccggAcaagaagccggcgacggtggtgctcgtcaatgccaattgCctcgaggccaccggcggcgacgcgtcgcagcacccgtcGccgttctgccagaaccaagccttggccgtggggataactcacggcggcaaggtgaggaagaaactcacacatcacgccggcttcctcgccggcattgcaatGgcggctctcgccgccgcgtcggccatcgccgtcgtcgccgtcgtcgccgtgaggaggaagaacaagAaaggcgtaatggtgaggccaccggcgatgttgggagaagacaattcttcaagcacgagtggctacccatccaagatgttcgccgatgcacgtatgatttgatttgtctctcactcatcactgaattttatctaaaatttcaccaaatttgatgtcaaaattcactaagatttgatttcctactggtgtctgcgacaaaatcaaaacaggctacatatcacagacagtgAagctgggagctctgggaattccaccatacagaacattttCtttggttgagcttgaagctgccactgacaactttgagaactctttgctactggggcaagattctttcggcgaggtatgccaatcttctccattgatcagttcagactctattgagcaagagaaattttatggtccctaagcaagttaaagtttagatactcaagatacctagcacctgaagttatcaaatttacaatacaaaatgtggtatctctcagtacatttttaaggatggtaaaattacccattgagcaacctacaactaattgatgcatgaaattcactgtattctgttcaaattaacctcacGggcttatatgagtgtgatgaataagtcctgcattttgaaaagcttgggagctgagatcagatctttgtttgTttgtcagatgtacagggggagactaggcaatGgcacactagtggccatcaGgagcctgaaggttaagaggaatcagtcttccctaagcttcagtcgccacattgaaacaatttctaggctcagacaccggaacttggtcagcgctctcGggcactgcttcgagtatgatcTtgatgattctactgtcactcagctgtacctcgtgttcgaatacgtgcaaaacGggaacctacggtgcaggatttcgcgtatgttaaattgtcagctgttctccttcattgtttttcttttcagttgtttgcagtattcaGtcactgactgttgctttgcactgcatcctgtactgattttcaccagaaggaactgaaggaaggaagcttacatgggcacagagaatatcagctgccatcggcatcgccaacggcattcagttcttgcatgctgggatgatgcctggcctgtttggaaacaatctgaagatcaacaacattcttctcgatcagaatcatgtcgcgaagatcagcaGctacaatatcccaatcctaggagaggccatgaaatctgaggtagatcagtcatttttaacagtccttagtaatttgtttttCtggctgttgctgactagAaatgttatgatgtttgtcaatccaagaagggaggacctggaggcaagcaccatactgAaaggtacttatcaggacttgatccgtacatatgcctatgatctggtagtttcaatcagtacaatctagtgaaaaaaaacccactgaattctgcatgtgttattttgcagcccactgctcaacgataaaaccgacatcttcgatttcggggtgatccttcttgagatcgtgtctggaaagacaatcacatccttatatgaggttgagataatgaaagaactggtatgtgacatgaccatcacctgaaaaccattgTttcacatgaaaaatgccaacctctgaatttccacctagcaatgcacagcacaatctctgaatctctactccTtttttcagatgctatgggcagtcgccgacgaggatttggtgaggaggaggagctttgccgaccaGgaggtgagcaagggatgctccgacgagtcgctgaggacgatcatgcagatctgcctgaggtgcctggccaaggaggctgtgcagcggccgtccatcgaggacgtcctctggaacctgcagttcgctgcacaggtgcaggacgactgggaaggagataaccggagcagcgacggttcaatggtgtcgtcgtcgtcccggatcacgaaatcctCcagattccagaatgagcaaaccaggtgtgccatacatccaaatcaatcaagtatcctctgatcaagtgaccatcacattcacatttccaaaccaagattgatttgttagatttgtagtgttgataggttattgttggattggtgtgtatggatgaaatgaggaagagcttttgcctttgttttgaaggattctaaagttcagcttgttcttacaggtctgggcgggaaaaagaatgtgaggattcgtcagctcgtggatcagtgtggctgcaggctgcaacagaagatggaaattttgagacaggcaggaggcaagctgaagatgaaagatattgatggaactgatcctccGggttgtgcttctgTCTtgatgcacacaaccttcccctttcttgatcgtgtttgctcactgaatcctttaaatctcagaaacgccttcatttgTtttttcttcttatctttcttttgtctttaggcgtACAataatatgtgctttttaggcgtacaaataatgttgtgctgtgcaagcccctgtatcgttctgtcaatattaaagctggaatagtttctactaccaacggtcagagttccgtgataattataaaaacagctgcggttgctgcc
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| CDS seq | atgagagcttctccaatggcgggtgcaagCcatcacctggtcgtcttcttggcagcgctgctcgcgttgctcccgggaagctcgcagctgcagtactcgcagacatggacgctgttcaagatccagcagatgctgaaccaCccgccggtgctgagccactggcgccggaccaccgacttctgcggcggcggcggcacggcggcgccgtcggcggccgtggtgtgctacggcgacacggtgacgcAgcTacacatcgccggcgtccgcggcgcgccgccgctcccgatgaacttctccAtcggcgcgctcgtcatggcgctgtcgaggctccccGacctcaaggtgctcacgctgtccgggctcgggctctggggccccctgccggacaagatcggccgcctcgccgcgctggagatcgtcaacatgagcggcaactacctctacggcggcgtccccggcgggctgtcccagctcaccggcctccagacgctgatcctcgacgacaacctgctcgccggcgagCTcccggcgtggatcggcgagctgccgcagctggccgtgctgagcctgcggaacAactcgctgggcggcgccgtgccGGcgtccgtgggtcgcatggagtcgctgaggtcgctggtgctcgcgtcgaacaacctgacggggaacctgccggacatgagcggcctcaccaacctccaggtgatcgacgtcggcgacaactggctcggcccggcgttcccggcgctGgggcggaaggtggtcacggtggtgctcagccggaacaggttcaccggcggcctccccggcgagatcacctccttctAcctgctcgagcggctcgacgtgtcgtggaaccgcttcgtcggcccgttcatgccggcgctgctgtccctgccggCcatccgctacctcaacgtcgccggcaacaggttcaccggcgtgctctccgacaaggttgcctgcggcgacaatctccagttcgtcgacctgtcctccaacctcctcaccggcagcgagccggcctgcctgaggccggAcaagaagccggcgacggtggtgctcgtcaatgccaattgCctcgaggccaccggcggcgacgcgtcgcagcacccgtcGccgttctgccagaaccaagccttggccgtggggataactcacggcggcaaggtgaggaagaaactcacacatcacgccggcttcctcgccggcattgcaatGgcggctctcgccgccgcgtcggccatcgccgtcgtcgccgtcgtcgccgtgaggaggaagaacaagAaaggcgtaatggtgaggccaccggcgatgttgggagaagacaattcttcaagcacgagtggctacccatccaagatgttcgccgatgcacgctacatatcacagacagtgAagctgggagctctgggaattccaccatacagaacattttCtttggttgagcttgaagctgccactgacaactttgagaactctttgctactggggcaagattctttcggcgagatgtacagggggagactaggcaatGgcacactagtggccatcaGgagcctgaaggttaagaggaatcagtcttccctaagcttcagtcgccacattgaaacaatttctaggctcagacaccggaacttggtcagcgctctcGggcactgcttcgagtatgatcTtgatgattctactgtcactcagctgtacctcgtgttcgaatacgtgcaaaacGggaacctacggtgcaggatttcgcaaggaactgaaggaaggaagcttacatgggcacagagaatatcagctgccatcggcatcgccaacggcattcagttcttgcatgctgggatgatgcctggcctgtttggaaacaatctgaagatcaacaacattcttctcgatcagaatcatgtcgcgaagatcagcaGctacaatatcccaatcctaggagaggccatgaaatctgagaagggaggacctggaggcaagcaccatactgAaagcccactgctcaacgataaaaccgacatcttcgatttcggggtgatccttcttgagatcgtgtctggaaagacaatcacatccttatatgaggttgagataatgaaagaactgatgctatgggcagtcgccgacgaggatttggtgaggaggaggagctttgccgaccaGgaggtgagcaagggatgctccgacgagtcgctgaggacgatcatgcagatctgcctgaggtgcctggccaaggaggctgtgcagcggccgtccatcgaggacgtcctctggaacctgcagttcgctgcacaggtgcaggacgactgggaaggagataaccggagcagcgacggttcaatggtgtcgtcgtcgtcccggatcacgaaatcctCcagattccagaatgagcaaaccaggtctgggcgggaaaaagaatgtgaggattcgtcagctcgtggatcagtgtggctgcaggctgcaacagaagatggaaattttgagacaggcaggaggcaagctgaagatgaaagatattga
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| Protein seq | MRASPMAGASHHLVVFLAALLALLPGSSQLQYSQTWTLFKIQQMLNHPPVLSHWRRTTDFCGGGGTAAPSAAVVCYGDTVTQLHIAGVRGAPPLPMNFSIGALVMALSRLPDLKVLTLSGLGLWGPLPDKIGRLAALEIVNMSGNYLYGGVPGGLSQLTGLQTLILDDNLLAGELPAWIGELPQLAVLSLRNNSLGGAVPASVGRMESLRSLVLASNNLTGNLPDMSGLTNLQVIDVGDNWLGPAFPALGRKVVTVVLSRNRFTGGLPGEITSFYLLERLDVSWNRFVGPFMPALLSLPAIRYLNVAGNRFTGVLSDKVACGDNLQFVDLSSNLLTGSEPACLRPDKKPATVVLVNANCLEATGGDASQHPSPFCQNQALAVGITHGGKVRKKLTHHAGFLAGIAMAALAAASAIAVVAVVAVRRKNKKGVMVRPPAMLGEDNSSSTSGYPSKMFADARYISQTVKLGALGIPPYRTFSLVELEAATDNFENSLLLGQDSFGEMYRGRLGNGTLVAIRSLKVKRNQSSLSFSRHIETISRLRHRNLVSALGHCFEYDLDDSTVTQLYLVFEYVQNGNLRCRISQGTEGRKLTWAQRISAAIGIANGIQFLHAGMMPGLFGNNLKINNILLDQNHVAKISSYNIPILGEAMKSEKGGPGGKHHTESPLLNDKTDIFDFGVILLEIVSGKTITSLYEVEIMKELMLWAVADEDLVRRRSFADQEVSKGCSDESLRTIMQICLRCLAKEAVQRPSIEDVLWNLQFAAQVQDDWEGDNRSSDGSMVSSSSRITKSSRFQNEQTRSGREKECEDSSARGSVWLQAATEDGNFETGRRQAEDERY |
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| Function | Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [UniProtKB/Swiss-Prot:Q8LFN2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0037640 | OsLima_03g0037640.01 | Chr03 | 36070328 | 36074865 | + | NAM | ||
| CDS seq | atgagagcttctccaatggcgggtgcaagCcatcacctggtcgtcttcttggcagcgctgctcgcgttgctcccgggaagctcgcagctgcagtactcgcagacatggacgctgttcaagatccagcagatgctgaaccaCccgccggtgctgagccactggcgccggaccaccgacttctgcggcggcggcggcacggcggcgccgtcggcggccgtggtgtgctacggcgacacggtgacgcAgcTacacatcgccggcgtccgcggcgcgccgccgctcccgatgaacttctccAtcggcgcgctcgtcatggcgctgtcgaggctccccGacctcaaggtgctcacgctgtccgggctcgggctctggggccccctgccggacaagatcggccgcctcgccgcgctggagatcgtcaacatgagcggcaactacctctacggcggcgtccccggcgggctgtcccagctcaccggcctccagacgctgatcctcgacgacaacctgctcgccggcgagCTcccggcgtggatcggcgagctgccgcagctggccgtgctgagcctgcggaacAactcgctgggcggcgccgtgccGGcgtccgtgggtcgcatggagtcgctgaggtcgctggtgctcgcgtcgaacaacctgacggggaacctgccggacatgagcggcctcaccaacctccaggtgatcgacgtcggcgacaactggctcggcccggcgttcccggcgctGgggcggaaggtggtcacggtggtgctcagccggaacaggttcaccggcggcctccccggcgagatcacctccttctAcctgctcgagcggctcgacgtgtcgtggaaccgcttcgtcggcccgttcatgccggcgctgctgtccctgccggCcatccgctacctcaacgtcgccggcaacaggttcaccggcgtgctctccgacaaggttgcctgcggcgacaatctccagttcgtcgacctgtcctccaacctcctcaccggcagcgagccggcctgcctgaggccggAcaagaagccggcgacggtggtgctcgtcaatgccaattgCctcgaggccaccggcggcgacgcgtcgcagcacccgtcGccgttctgccagaaccaagccttggccgtggggataactcacggcggcaaggtgaggaagaaactcacacatcacgccggcttcctcgccggcattgcaatGgcggctctcgccgccgcgtcggccatcgccgtcgtcgccgtcgtcgccgtgaggaggaagaacaagAaaggcgtaatggtgaggccaccggcgatgttgggagaagacaattcttcaagcacgagtggctacccatccaagatgttcgccgatgcacgctacatatcacagacagtgAagctgggagctctgggaattccaccatacagaacattttCtttggttgagcttgaagctgccactgacaactttgagaactctttgctactggggcaagattctttcggcgagatgtacagggggagactaggcaatGgcacactagtggccatcaGgagcctgaaggttaagaggaatcagtcttccctaagcttcagtcgccacattgaaacaatttctaggctcagacaccggaacttggtcagcgctctcGggcactgcttcgagtatgatcTtgatgattctactgtcactcagctgtacctcgtgttcgaatacgtgcaaaacGggaacctacggtgcaggatttcgcaaggaactgaaggaaggaagcttacatgggcacagagaatatcagctgccatcggcatcgccaacggcattcagttcttgcatgctgggatgatgcctggcctgtttggaaacaatctgaagatcaacaacattcttctcgatcagaatcatgtcgcgaagatcagcaGctacaatatcccaatcctaggagaggccatgaaatctgagaagggaggacctggaggcaagcaccatactgAaagcccactgctcaacgataaaaccgacatcttcgatttcggggtgatccttcttgagatcgtgtctggaaagacaatcacatccttatatgaggttgagataatgaaagaactgatgctatgggcagtcgccgacgaggatttggtgaggaggaggagctttgccgaccaGgaggtgagcaagggatgctccgacgagtcgctgaggacgatcatgcagatctgcctgaggtgcctggccaaggaggctgtgcagcggccgtccatcgaggacgtcctctggaacctgcagttcgctgcacaggtgcaggacgactgggaaggagataaccggagcagcgacggttcaatggtgtcgtcgtcgtcccggatcacgaaatcctCcagattccagaatgagcaaaccaggtctgggcgggaaaaagaatgtgaggattcgtcagctcgtggatcagtgtggctgcaggctgcaacagaagatggaaattttgagacaggcaggaggcaagctgaagatgaaagatattga
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| Protein seq | MRASPMAGASHHLVVFLAALLALLPGSSQLQYSQTWTLFKIQQMLNHPPVLSHWRRTTDFCGGGGTAAPSAAVVCYGDTVTQLHIAGVRGAPPLPMNFSIGALVMALSRLPDLKVLTLSGLGLWGPLPDKIGRLAALEIVNMSGNYLYGGVPGGLSQLTGLQTLILDDNLLAGELPAWIGELPQLAVLSLRNNSLGGAVPASVGRMESLRSLVLASNNLTGNLPDMSGLTNLQVIDVGDNWLGPAFPALGRKVVTVVLSRNRFTGGLPGEITSFYLLERLDVSWNRFVGPFMPALLSLPAIRYLNVAGNRFTGVLSDKVACGDNLQFVDLSSNLLTGSEPACLRPDKKPATVVLVNANCLEATGGDASQHPSPFCQNQALAVGITHGGKVRKKLTHHAGFLAGIAMAALAAASAIAVVAVVAVRRKNKKGVMVRPPAMLGEDNSSSTSGYPSKMFADARYISQTVKLGALGIPPYRTFSLVELEAATDNFENSLLLGQDSFGEMYRGRLGNGTLVAIRSLKVKRNQSSLSFSRHIETISRLRHRNLVSALGHCFEYDLDDSTVTQLYLVFEYVQNGNLRCRISQGTEGRKLTWAQRISAAIGIANGIQFLHAGMMPGLFGNNLKINNILLDQNHVAKISSYNIPILGEAMKSEKGGPGGKHHTESPLLNDKTDIFDFGVILLEIVSGKTITSLYEVEIMKELMLWAVADEDLVRRRSFADQEVSKGCSDESLRTIMQICLRCLAKEAVQRPSIEDVLWNLQFAAQVQDDWEGDNRSSDGSMVSSSSRITKSSRFQNEQTRSGREKECEDSSARGSVWLQAATEDGNFETGRRQAEDERY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.014846 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0791700 | RBH | 0.502353 | 0.000000 | 6.654647 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g57780 | RBH | 0.000000 | 0.049698 | 1.051030 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0791700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0037750 | RBH | 0.0 | 0.774311 | 2.611851 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0037440 | RBH | 0.0 | 0.317323 | 1.399635 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0037500 | RBH | 0.000000 | 1.973561 | 3.357460 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0037800 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0037300 | RBH | 0.000000 | 0.000000 | 2.892043 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0562200 | RBH | 18.3334185 | 77.837589 | 44.049643 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0037100 | RBH | 0.000000 | 0.047371 | 0.341658 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0564100 | RBH | 26.3713345 | 0.3210295 | 37.6478005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004100 | RBH | 0.024838 | 0.307047 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0037650 | RBH | 0.053869 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0037250 | RBH | 0.000000 | 1.864815 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0037320 | RBH | 0.000000 | 0.000000 | 0.271954 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0037330 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G037110 | RBH | 0.0 | 0.738019 | 2.571216 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0036890 | RBH | 0.000000 | 0.000000 | 1.973839 |
