Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0035240 | OGI:03087860 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:34456244-34458829 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtaaaatttctcgagtggggaggggtagatccaattcagacccaattcggtggcttcagtagtgaagccaatataaggggggcagtctcccctctgaacacacacaacttgtaggcagcttctctctgcatacaagaggaggtctctccttcttcagcgactccctcaagatcttgcccaaacttgctgagatctggtgagtgccttctcacggtcctgtggatcatttgtggtttagttcgtagtttgttgtgtgatcttgcaaagtcttgatctagtagctgtgttcgtttttgatttctctgaagatattagctttgctgtgttcggatctgggagatggagatggagatctcattttcctctcaccccctttctggatcacggtttctcacttttgccgcttaaaatcgcgattttgctcgcaaatttacttcctttatgcaaaaaaaatcatgttaaagagttggtcgcggcaatggatggatctcgcccgcccctgtctatgatctgatactcttccccaaaacctcgaaatgtttccatctcgattctattgggcgcccccattttcccgtgtttcttgcgagatcccggttcgtcagctcgtgatccgcgaaccccgatttgctagtgttgacttggtagcaatccgtttcatcactccattcagtttgctaatactaataaaaattgtaatattttttttccagtaagagcagtaggcgaagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtgatcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatcgacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaaggagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcggacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaaggcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtccgacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaagatcctgacgcacaacagcaagggcatcaactaccagatcctctccaacccggagttcctcgccgagggcaccgctattgacgacctgttcaagcccgaccgcgtcctcatcggcggccgcgagacggcggaggggaggaaggccgtgcaggcgctcaagtcggtgtacgcgcactgggtgcccgaggacaggatcatcaccaccaacctctggtccgccgagctctccaagctcgccgcgaacgcgttcctggcgcagaggatctcgtcggtgaacgccatctcggcgctctgcgaggccaccggcgcgaacgtcaccgaggtggcgtacgccgtcggcaaggactcgaggattggccccaaattcctcaacgccagcgttggattcggcggctcctgcttccagaaggacatcctgaatctggtgtacatctgcgaatgcaatggcctccccgaggttgcgaactactggaagcaggtgatcaagatcaacgactaccagaagagccggttcgtgaaccgggtggtgtcgtccatgttcaacacggtgtcgggcaagaagatcgccgtgctggggttcgcgttcaagaaggacaccggcgacacgagggagacgccggcgatcgacgtgtgccacggcctgctcggcgacaaggcgcagatcagcatctacgacccgcaggtgacggaggaccagatccagcgggacctcgccatgggcaagttcgactgggaccacccgatgcacctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgaggccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctcgactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaacgtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggctcaaggacatgcccgccgtggcatgataagattcatgtgaattttaatcgatcgattcgattctcaacctcgattcgagctgcaggaattcgacttggaagaagagcaatgcaagatgggttggccacttaaaattctttatagttcgttttttttttgcaggagacgacactaccattttctcaggcataaaaaagttgggtgttcttgttagtaaaatcatcgtcatcgctgttgaagttttttttttcatcgtttgcactgttctagatcactataatccccaccccactccccctccccctccccctccccctgtcatcatggctctttctgtttgagggccatctgaacgaaaatttacctgtattattcagtcaacttgttatagcagattggttattccattgtactattctcaaatatatctcttgctgc
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| CDS seq | atggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtgatcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatcgacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaaggagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcggacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaaggcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtccgacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaagatcctgacgcacaacagcaagggcatcaactaccagatcctctccaacccggagttcctcgccgagggcaccgctattgacgacctgttcaagcccgaccgcgtcctcatcggcggccgcgagacggcggaggggaggaaggccgtgcaggcgctcaagtcggtgtacgcgcactgggtgcccgaggacaggatcatcaccaccaacctctggtccgccgagctctccaagctcgccgcgaacgcgttcctggcgcagaggatctcgtcggtgaacgccatctcggcgctctgcgaggccaccggcgcgaacgtcaccgaggtggcgtacgccgtcggcaaggactcgaggattggccccaaattcctcaacgccagcgttggattcggcggctcctgcttccagaaggacatcctgaatctggtgtacatctgcgaatgcaatggcctccccgaggttgcgaactactggaagcaggtgatcaagatcaacgactaccagaagagccggttcgtgaaccgggtggtgtcgtccatgttcaacacggtgtcgggcaagaagatcgccgtgctggggttcgcgttcaagaaggacaccggcgacacgagggagacgccggcgatcgacgtgtgccacggcctgctcggcgacaaggcgcagatcagcatctacgacccgcaggtgacggaggaccagatccagcgggacctcgccatgggcaagttcgactgggaccacccgatgcacctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgaggccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctcgactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaacgtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggctcaaggacatgcccgccgtggcatga
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| Protein seq | MVKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISKPRIDAWNSEQLPIYEPGLDEVVKECRGRNLFFSTDVEKHVAEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINYQILSNPEFLAEGTAIDDLFKPDRVLIGGRETAEGRKAVQALKSVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVTEVAYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRDLAMGKFDWDHPMHLQPTSPTAFKQVSVVWDAYEATKNAHGLCILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVVDPEKLREIGFIVYSIGKPLDAWLKDMPAVA |
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| Function | UDP-glucose 6-dehydrogenase 3 [UniProtKB/Swiss-Prot:Q9AUV6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0035240 | OsLima_03g0035240.02 | Chr03 | 34456522 | 34458829 | + | NAM | ||
| CDS seq | atggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtgatcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatcgacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaaggagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcggacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaaggcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtccgacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaagatcctgacgcacaacagcaagggcatcaactaccagatcctctccaacccggagttcctcgccgagggcaccgctattgacgacctgttcaagcccgaccgcgtcctcatcggcggccgcgagacggcggaggggaggaaggccgtgcaggcgctcaagtcggtgtacgcgcactgggtgcccgaggacaggatcatcaccaccaacctctggtccgccgagctctccaagctcgccgcgaacgcgttcctggcgcagaggatctcgtcggtgaacgccatctcggcgctctgcgaggccaccggcgcgaacgtcaccgaggtggcgtacgccgtcggcaaggactcgaggattggccccaaattcctcaacgccagcgttggattcggcggctcctgcttccagaaggacatcctgaatctggtgtacatctgcgaatgcaatggcctccccgaggttgcgaactactggaagcaggtgatcaagatcaacgactaccagaagagccggttcgtgaaccgggtggtgtcgtccatgttcaacacggtgtcgggcaagaagatcgccgtgctggggttcgcgttcaagaaggacaccggcgacacgagggagacgccggcgatcgacgtgtgccacggcctgctcggcgacaaggcgcagatcagcatctacgacccgcaggtgacggaggaccagatccagcgggacctcgccatgggcaagttcgactgggaccacccgatgcacctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgaggccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctcgactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaacgtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggctcaaggacatgcccgccgtggcatga
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| Protein seq | MVKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISKPRIDAWNSEQLPIYEPGLDEVVKECRGRNLFFSTDVEKHVAEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINYQILSNPEFLAEGTAIDDLFKPDRVLIGGRETAEGRKAVQALKSVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVTEVAYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRDLAMGKFDWDHPMHLQPTSPTAFKQVSVVWDAYEATKNAHGLCILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVVDPEKLREIGFIVYSIGKPLDAWLKDMPAVA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0035240 | OsLima_03g0035240.01 | Chr03 | 34456244 | 34458829 | + | NAM | ||
| CDS seq | atggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtgatcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatcgacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaaggagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcggacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaaggcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtccgacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaagatcctgacgcacaacagcaagggcatcaactaccagatcctctccaacccggagttcctcgccgagggcaccgctattgacgacctgttcaagcccgaccgcgtcctcatcggcggccgcgagacggcggaggggaggaaggccgtgcaggcgctcaagtcggtgtacgcgcactgggtgcccgaggacaggatcatcaccaccaacctctggtccgccgagctctccaagctcgccgcgaacgcgttcctggcgcagaggatctcgtcggtgaacgccatctcggcgctctgcgaggccaccggcgcgaacgtcaccgaggtggcgtacgccgtcggcaaggactcgaggattggccccaaattcctcaacgccagcgttggattcggcggctcctgcttccagaaggacatcctgaatctggtgtacatctgcgaatgcaatggcctccccgaggttgcgaactactggaagcaggtgatcaagatcaacgactaccagaagagccggttcgtgaaccgggtggtgtcgtccatgttcaacacggtgtcgggcaagaagatcgccgtgctggggttcgcgttcaagaaggacaccggcgacacgagggagacgccggcgatcgacgtgtgccacggcctgctcggcgacaaggcgcagatcagcatctacgacccgcaggtgacggaggaccagatccagcgggacctcgccatgggcaagttcgactgggaccacccgatgcacctgcagccgacgagccccacggcgttcaagcaggtgagcgtggtgtgggacgcgtacgaggccaccaagaacgcccatggcctctgcatcctcaccgagtgggacgagttcaagacgctcgactaccagaagatctacgacaacatgcagaagccggcgttcgtcttcgacggccgcaacgtcgtcgacccggagaagctcagggagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggctcaaggacatgcccgccgtggcatga
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| Protein seq | MVKICCIGAGYVGGPTMAVIALKCPAIEVVVVDISKPRIDAWNSEQLPIYEPGLDEVVKECRGRNLFFSTDVEKHVAEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINYQILSNPEFLAEGTAIDDLFKPDRVLIGGRETAEGRKAVQALKSVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAISALCEATGANVTEVAYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKINDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCHGLLGDKAQISIYDPQVTEDQIQRDLAMGKFDWDHPMHLQPTSPTAFKQVSVVWDAYEATKNAHGLCILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVVDPEKLREIGFIVYSIGKPLDAWLKDMPAVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr03 | 34456244 | 34456957 | + | OsLima_03g0035240.01 | OsLima_03g0035240.02,OsLima_03g0035240.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.418480 | 1.891595 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0757900 | RBH | 12.131588 | 7.615557 | 24.160583 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g55070 | RBH | 7.850152 | 4.985518 | 6.025093 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0757900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035400 | RBH | 0.976621 | 123.699905 | 80.885193 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035070 | RBH | 0.408641 | 58.369762 | 12.916492 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035160 | RBH | 3.292455 | 216.116882 | 87.073273 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035460 | RBH | 0.202810 | 11.499921 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034980 | RBH | 4.631662 | 474.551819 | 58.950367 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0210100 | SBH | 23.208069 | 31.929609 | 6.4178105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034770 | RBH | 0.309684 | 22.858887 | 3.163684 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0235000 | SBH | 26.96451 | 12.590381 | 16.930622 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0011550 | SBH | 0.043397 | 2.596818 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035270 | RBH | 1.098512 | 216.567169 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0034930 | RBH | 6.342798 | 193.203751 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035000 | RBH | 0.000000 | 3.177360 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0034960 | RBH | 0.598864 | 173.621338 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G034760 | RBH | 0.191602 | 157.118561 | 38.450188 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034600 | RBH | 1.381253 | 191.383392 | 36.909760 |
