Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0026690 | OGI:06027190 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:26633047-26634779 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccagaacaacaagtatgtgtgatggtggtgtgacttcatcagaaataaaagtttgatatgtttgagctatttaagtgaagagttagttggacttaatcttataatttacatataagtatttgatacagcttctgccttagcagagtagaggagcgacgaaaatgccgcttcaccctcacaatatgtttttttaagaatggaacagtggctccactctactccctccatccttaaatattcgccgttgacttttttaaacatgtttgactgttcgtcttattcaaaaacttttgtgaatattattaaaaacttaagtagtagtagtatatttaacagtgaatcaaatgataggAaaaaaattaataattacttaaatttttttaataagacaaacgaccgaatatgtttaaaaaaatcaacggcgtcaaatatttagggaggagtatattatttaagtatcttagaagtgtttgatatagctttagttttatgggatttttttagtaggagctttaccaaatgaacccgttgtactttaacaaatgtgttttactaaaaatatggtgccatatttttttagtcgcttttactcattttttttccttatgttactgctacctctctttgttaattatatgtgagtacacgtttctattcgccaagttcttctagggtttcaagtagttaattaattacttttaatcgttgttttcatataaattttcattaatctcacgcgtatcgatacagaaaatcatctctagagaattcgtttctcctgatttggacaggtgcttgagcctgttttggaggagattgttttgttggctcatgaaccccagtactatatctctgatgagactatgggattgatacaggaattccaattgaggaatgaattgctgccgaaacttgcaaagaggtgcagtgatttggctattcctaagcctgTtgtttgtctggcccctttcactaccctagtgctgccaaaaaggaaagcagaatctgagttgccgccaactttcaagcgtcagcatgtgggtgaggcctcaagctgggttgttgtgcagtatgaaggcccagaaattttaatgcctacgcctttgtctgttttacctcctcctgttgaggatttgtctcctgatgttggacatgagggatctggaccttcagtgcagaatagttgtttggagctggtgccttttgttgatcagcatgtggaaccctctactccaaaagtctctgtgcactctcttcctccaaaagcccatgtcaagaagaaagatgggaagagaatcctttatgattctgagagaaggcagagtgctaggttgagggcatctgctgaaggatgtctgaagcctgatcctagaatgggaattggaaagcccagaggcaaatctgcaaggaagctaaaagagctagcagttattgctaatttatctacagagagtgtgcttaatgactctgattttctccttgattgctctgttaatgatactggttcctttactaattcttccccatctgattgctctgttctctcttacaaaagatggggggtggagatgtgcggcctcaatcttgaggatgtggctgaatcgaagcttcagggggagaagctgctggaactcccaagacccacagatgatgcagaacaatcaagcaaaaagggttactactgctgtggagtcttttatggctatgctatgttctggtcctgtttctag
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| CDS seq | atgccagaacaacaagtgcttgagcctgttttggaggagattgttttgttggctcatgaaccccagtactatatctctgatgagactatgggattgatacaggaattccaattgaggaatgaattgctgccgaaacttgcaaagaggtgcagtgatttggctattcctaagcctgTtgtttgtctggcccctttcactaccctagtgctgccaaaaaggaaagcagaatctgagttgccgccaactttcaagcgtcagcatgtgggtgaggcctcaagctgggttgttgtgcagtatgaaggcccagaaattttaatgcctacgcctttgtctgttttacctcctcctgttgaggatttgtctcctgatgttggacatgagggatctggaccttcagtgcagaatagttgtttggagctggtgccttttgttgatcagcatgtggaaccctctactccaaaagtctctgtgcactctcttcctccaaaagcccatgtcaagaagaaagatgggaagagaatcctttatgattctgagagaaggcagagtgctaggttgagggcatctgctgaaggatgtctgaagcctgatcctagaatgggaattggaaagcccagaggcaaatctgcaaggaagctaaaagagctagcagttattgctaatttatctacagagagtgtgcttaatgactctgattttctccttgattgctctgttaatgatactggttcctttactaattcttccccatctgattgctctgttctctcttacaaaagatggggggtggagatgtgcggcctcaatcttgaggatgtggctgaatcgaagcttcagggggagaagctgctggaactcccaagacccacagatgatgcagaacaatcaagcaaaaagggttactactgctgtggagtcttttatggctatgctatgttctggtcctgtttctag
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| Protein seq | MPEQQVLEPVLEEIVLLAHEPQYYISDETMGLIQEFQLRNELLPKLAKRCSDLAIPKPVVCLAPFTTLVLPKRKAESELPPTFKRQHVGEASSWVVVQYEGPEILMPTPLSVLPPPVEDLSPDVGHEGSGPSVQNSCLELVPFVDQHVEPSTPKVSVHSLPPKAHVKKKDGKRILYDSERRQSARLRASAEGCLKPDPRMGIGKPRGKSARKLKELAVIANLSTESVLNDSDFLLDCSVNDTGSFTNSSPSDCSVLSYKRWGVEMCGLNLEDVAESKLQGEKLLELPRPTDDAEQSSKKGYYCCGVFYGYAMFWSCF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0026690 | OsLima_03g0026690.01 | Chr03 | 26633047 | 26634779 | + | NAM | ||
| CDS seq | atgccagaacaacaagtgcttgagcctgttttggaggagattgttttgttggctcatgaaccccagtactatatctctgatgagactatgggattgatacaggaattccaattgaggaatgaattgctgccgaaacttgcaaagaggtgcagtgatttggctattcctaagcctgTtgtttgtctggcccctttcactaccctagtgctgccaaaaaggaaagcagaatctgagttgccgccaactttcaagcgtcagcatgtgggtgaggcctcaagctgggttgttgtgcagtatgaaggcccagaaattttaatgcctacgcctttgtctgttttacctcctcctgttgaggatttgtctcctgatgttggacatgagggatctggaccttcagtgcagaatagttgtttggagctggtgccttttgttgatcagcatgtggaaccctctactccaaaagtctctgtgcactctcttcctccaaaagcccatgtcaagaagaaagatgggaagagaatcctttatgattctgagagaaggcagagtgctaggttgagggcatctgctgaaggatgtctgaagcctgatcctagaatgggaattggaaagcccagaggcaaatctgcaaggaagctaaaagagctagcagttattgctaatttatctacagagagtgtgcttaatgactctgattttctccttgattgctctgttaatgatactggttcctttactaattcttccccatctgattgctctgttctctcttacaaaagatggggggtggagatgtgcggcctcaatcttgaggatgtggctgaatcgaagcttcagggggagaagctgctggaactcccaagacccacagatgatgcagaacaatcaagcaaaaagggttactactgctgtggagtcttttatggctatgctatgttctggtcctgtttctag
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| Protein seq | MPEQQVLEPVLEEIVLLAHEPQYYISDETMGLIQEFQLRNELLPKLAKRCSDLAIPKPVVCLAPFTTLVLPKRKAESELPPTFKRQHVGEASSWVVVQYEGPEILMPTPLSVLPPPVEDLSPDVGHEGSGPSVQNSCLELVPFVDQHVEPSTPKVSVHSLPPKAHVKKKDGKRILYDSERRQSARLRASAEGCLKPDPRMGIGKPRGKSARKLKELAVIANLSTESVLNDSDFLLDCSVNDTGSFTNSSPSDCSVLSYKRWGVEMCGLNLEDVAESKLQGEKLLELPRPTDDAEQSSKKGYYCCGVFYGYAMFWSCF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024950 | SBH | 2.963561 | 4.127228 | 25.715715 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0024980 | RBH | 0.255960 | 0.076444 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0026650 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0422700 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0026430 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026730 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026820 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026550 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024570 | RBH | 0.0 | 0.0 | 0.0 |
