Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0026350 | OGI:03068320 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:26226903-26233301 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accgctatagaatctgaagtccccggagtacctctgcccatcacctttccacttttctcctcctgattccttcctacccatcctgattcctgatatccaaatgggcatgctgaaaataggcaagaactgcagtgtttgcaaggagtggcaagaacactgctactggagccatatggccgatgactgtaagcacttcttgacgtatatggttggggacttcaccgagagcatggtgagaaaatcaatcatctcaggcttccatttatatgttcttttctcatgttctttctcattttttttctgtacacaataaaaggcgcctaagtgcaaataaatctcactccataagatttctttttcatgtattcccatggtcTAtatattgatatcactgaatagattgactgacctgtcatttctgcagatcgtgcctagtagatttgccaacaatttcaacgggcacatttcagaggtcgtgaatctgaagtcacctagcggcaaaacatggagcattggagtagccaacagtgacaccggtgaactagttcttcggtcaggctggaaagagttcgtggatgctaatggcgtccaggaaaatgactgcctgctcttcaggtacagtggcgtctcctccttcgatgtgctcatctttgatccgtccggctgcgagaaggcgacgccgcatttcgtcgagaaccgtggatttgggagagaagagaagtctgcaggagctgaaggaggaggcagagatggtgacaagaatggccatcaccaacaccagctggagatgacaccccacaagaacagcagcaggtgcaggagcatCcccagtgcatgtaagcgcggattattcagtgatgagataggtatgtatgtcacacaacacaacactgtgtaatttattttttctttgataattgaaatcaatatatccagcccctgcatcatcgaaatgaaatgggtatgtcgcacagcactctaataaatttattttcttggataatgctctgtctgttttatattgtacgacgctttgatttttttttccagatcaaacttacttgttgaagttcagctaaatttattagaaagtttagcaacatcttcatcaccaaattagttttattaaatatattttttctaaaaacttgatatgatcaaagcatcttataatatgaacggatagggtagaaatcaatccagactctgcatcattgacatgtatgcggccatgggcattattgttgtaacaactaatattggtacatacatgcatgaacgtgcttgccttgcagagcaagatcatcgcgaagagaagaaggaaggggacgatgaagacgaagacaaagatggagaggacaggtactacttctgcaggcacggcgggcgagtgaccgagtacaacctgagcaagggagacaaggaggagatctcgcgcgtccccgtgccggtggagcctggcaacccggtgttggtgaaggtcatccacgccagccacctcctctccagccgctacagcacagtagtaagtgtgaggcatttctcgtcacatttttcagtgagattaatttcatggctgaaatataatggtgcatttcttttggtcagggcgtgtcgccggagttcgccggcaggtacctggggccggccatggcgagggaggtggtgatggagaggggaggaggaggaggaggaggggatcagtggcacgtccggttcgtgcgccGggagagcagccgcggcttccacggcaccgggtggcgtcggttcgcccgtgacaatggcctcctcgcccacgacgtctgcctcttcgagctcaggttggtggacggcgccggcgccggcgaccgcctgcgccgccggccgaggccgacgatggccgtgcacgtcctccggcgggtgcgcggccgcttcgtgctgattcgctgaccaaccatccatgtgcagctcaaactggtgaactgatctgagcccaacctggtcgcctctctgcttgctagctcttgcttgctgctggtcctggtgacaaccagtgcatctgtaatatctggtcatgctgtgtctaattcgtagtaccaagttgtgttaaattcggtgctacgttacaataattttaggatgaaggaagtatgcacgtacgtacctggtgatgatcaagctttctggtctgattaatgtggacctctggtctgattatgtggtcagtggtctcggggaacattaggcactctttgtttaggcttataagccaacttataagtcgaaaagtctaagctaaaataaacaagcagctttttcatttggcttttttaagccataagtcactctaacactattaagccaaaagctaggttggagaagcttttttttggcttatatgagatagatgtatgactctaccattaaacttaggacattaaatccactgcttaTaaatcatataagccaataagctgacttaaaagtctaggccaataagcctaagcctaaataaagaGggccttagtatggaagttgttctccttatcttacttcataccaaaccagtttaaggtgcaaaacacaagattcatggttagcctagaacggacccatcgttttgcttattcgcggaataagtcaaacggcATatttgcaaataaatattaatttgtgaataaaacttttatatacatgttctgagcgatctaaaagcaaatgctgaaaaataaacttcgataaaaaaaacctcaaaatcagctccaaatttaagattcaaaatttaaattttggctaataagcataagcataagcgaaaagataagacccttatttacaagttaattaatttgtaggtctataccagagccaactagactagtacactattacggagtagggttgtcaacgagccgagctcaactagctcacgagcctcaagTtttttttgggagccctacataggaggcgacccagctcTAtccaccaccgcctctcccctacctccttccccgccttaccgttgccggtgcgagttgcccaggaatcatggcaacaagccaggatgatcgtggtggggcaactgtttcgttcgccttcctgaacaccgaacggagagaaggatagtgatccagtgctcccttggccggatctagaggccaccggctaaagtggaggaggatggagaagcagaacagcggggcaaccttcgaggaggcgaggtcatgctacgtagggtggctaacctcgatagaattggggtgcggctggtgatggatacgttggcgtggccggcaggctagatcggcggaagatgctacgatcgacgaggctgaggatagtggtgccagaggctactgaggagatgggagtaagcaccccaggggcagctcatcctctttcctcatactttgctaccatgacaagaggtggagcctgacgacggttgcgaggttggaaggaatgatgaaggcggtcactgggtatgatggctgtcgatttttaggatcagcaatataatttctagggtgcacaacatcaaggagggatggtgacacaatcgtttatactggttcaggccctcaatgcgaggtaatacctagtccagttgtttgtggattgaatttgtgttggttgtgaatggtagaatacgtaggagtatggcgctagtcaaagtaataaagataatactccctcaatcaaaatataactacttctagttacaaatatagctgtattttaaaatagaggaaatacgaatttacaagagaagagaagagataatttcaaaggggtgagtgcatgcgcattgtgggtgtccgcatttgtattgtgtttctagaaaagagaagagttaaattattttaggatatAaaataatcaataatgtagcttagagaaagagtgaattgttaatctagtctagcgagtaggaatgaagcttatctgactttattcaatttacagatttatcacattatcatcgcgtcaactatatattatataaagtttggtttttcagtatgaggccgtctataaTCtaataatcccaagattcataaaagtagatttgacgtaactacatatcagttgagccgctgatatgtatatcctacttttcgccgggcatatttatatcctactttcctattgctgtcatatgtgtcacggctgaaatACacagcagctaagttaccgacacgttctcatcggaactatcgctgcagaacctcctgaagtccccggagtacctcttcccgtaacatttttccctttctcctatgagacctctgcctagtttctagatttcttcgtatccgtcctgatatccaaatgggcatgctgaaaataggcaagaactgcagcgtttgcaaggagtggcaagaacactgctactggagccatatggccgaccacagtaagcacttcttgaagcatatggttggggatttcaccgagagcatggtgagaaatcttctcacttacattttagatatatgatttttctcctcttttctgaaagtatctgaagctgggggcacatgagtcagtttgaataactaaaagggatgaaccatcaactgaatattcattcccctgaaaaaaatttgcaagctccatgcgagagtaagattttgcatttagccttctatggtgtacaggtactcaagccttttccagccTttttgaggggccatcaggccatgagaccatataaggctaaatgcaaaatcttactctctctctctctctctctctaagattatattttgcatgtctttccatggtaaactcaagcgctttttgtttttgaagtaaagtaaattcaagcacgaatctctctattcatatcactgtgtacctcagaaagaactgaagtatgaaaaaaaaaaaacctgaatcagtcaacctgctattgctgcagaccgtgcctgctagatttgcaaacaatttcaacgggcacatctcagaggaagtgaatctgagatctcctagcagcgaaacctggagcattggagtagccaacagcgacgccggtgaactagttcttcagcctggctggaaagagttcgtggatggcaacggcatcgaggaaggagactgcctgctcgtcaggtacagcggcgtctcctcctccttcgatgtgctcatctttgatccgtccggctgcgagaaggcgtcgccgcatttcgtcgggagccatggattcgggagagcggagaactccgccggagctgaacaaggaggcagaaacggccgccgcacgccgccgatcgtcgacggcgataatggccatcgccaccacctggagatgacgctccacaggaacagctgcaggagcatccccagagcatgcaaacgcagcttattcagtgatgaaacaggtatgacAacacaacatcaacactataataaactatagttcttgtttttttttcttcctgtaatgataactcaatccagcctgtgcatcgagatgtataaggccctgtttggtgagcttaagatgagaatccgctgtttggaagtcagcttctaagaatttggagaagctgggttttctagcttctggttctagtttattttctggattttacaactacgtattaggagaatctgggtaacaatgtggtagaatatgcagcagctaaaagctcccaaatcggcattgtaacttatatgcgtgtctgccacctgcagaagcgaaagaaaacgatggcgaagatgaagatgaagatgttgtcgcggccgcggaaggcgggcgctacggggagtactacttcagcaggcacggacgggtggccgagtacaacctgaggaaggaagacagggaggagatctcgcgcgtccccgtgccggttcagcccgggaacccggtgttcgtgcaggtcatccacagcagccacgtccgtagcagcaagtactgcattgtagtaagtgactcaccttcatcaaggttaaatctctggctatagctgccgctcgtgtctcctcctgcacacactgcacataccaaatggcattgcattgcaacattgcagtttcatttcttggctgaaatagggaaaatttaaattggtgctgcttttgttttgatgtcagggggtgtcgccggagttcgcgggtaagtatctgggggcggtggagagggaggtggtgctggagagggcgagcaggggaggggagtggcacgtcctgttcgtgcaccggcagaacacccgcggcttctacggcgccggctggcgtcagttcgccggcgacaatcgtctcgtcgcccacgacgtctgcctcttcgagctcacgatggtggacgccgcggccggcggcggcggaaaccgccggcgacgctggagccggcggccgacgatgaccgtgcatgtcctccgtcgggtgcgtggtcgcttcgtgcttctgcgctga
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| CDS seq | atgggcatgctgaaaataggcaagaactgcagtgtttgcaaggagtggcaagaacactgctactggagccatatggccgatgactgtaagcacttcttgacgtatatggttggggacttcaccgagagcatgatcgtgcctagtagatttgccaacaatttcaacgggcacatttcagaggtcgtgaatctgaagtcacctagcggcaaaacatggagcattggagtagccaacagtgacaccggtgaactagttcttcggtcaggctggaaagagttcgtggatgctaatggcgtccaggaaaatgactgcctgctcttcaggtacagtggcgtctcctccttcgatgtgctcatctttgatccgtccggctgcgagaaggcgacgccgcatttcgtcgagaaccgtggatttgggagagaagagaagtctgcaggagctgaaggaggaggcagagatggtgacaagaatggccatcaccaacaccagctggagatgacaccccacaagaacagcagcaggtgcaggagcatCcccagtgcatgtaagcgcggattattcagtgatgagatagagcaagatcatcgcgaagagaagaaggaaggggacgatgaagacgaagacaaagatggagaggacaggtactacttctgcaggcacggcgggcgagtgaccgagtacaacctgagcaagggagacaaggaggagatctcgcgcgtccccgtgccggtggagcctggcaacccggtgttggtgaaggtcatccacgccagccacctcctctccagccgctacagcacagtaggcgtgtcgccggagttcgccggcaggtacctggggccggccatggcgagggaggtggtgatggagaggggaggaggaggaggaggaggggatcagtggcacgtccggttcgtgcgccGggagagcagccgcggcttccacggcaccgggtggcgtcggttcgcccgtgacaatggcctcctcgcccacgacgtctgcctcttcgagctcaggttggtggacggcgccggcgccggcgaccgcctgcgccgccggccgaggccgacgatggccgtgcacgtcctccggcgggtgcgcggccgcttcaactgcagcgtttgcaaggagtggcaagaacactgctactggagccatatggccgaccacagtaagcacttcttgaagcatatggttggggatttcaccgagagcatgaccgtgcctgctagatttgcaaacaatttcaacgggcacatctcagaggaagtgaatctgagatctcctagcagcgaaacctggagcattggagtagccaacagcgacgccggtgaactagttcttcagcctggctggaaagagttcgtggatggcaacggcatcgaggaaggagactgcctgctcgtcaggtacagcggcgtctcctcctccttcgatgtgctcatctttgatccgtccggctgcgagaaggcgtcgccgcatttcgtcgggagccatggattcgggagagcggagaactccgccggagctgaacaaggaggcagaaacggccgccgcacgccgccgatcgtcgacggcgataatggccatcgccaccacctggagatgacgctccacaggaacagctgcaggagcatccccagagcatgcaaacgcagcttattcagtgatgaaacaggcgggcgctacggggagtactacttcagcaggcacggacgggtggccgagtacaacctgaggaaggaagacagggaggagatctcgcgcgtccccgtgccggttcagcccgggaacccggtgttcgtgcaggtcatccacagcagccacgtccgtagcagcaagtactgcattgtaggggtgtcgccggagttcgcgggtaagtatctgggggcggtggagagggaggtggtgctggagagggcgagcaggggaggggagtggcacgtcctgttcgtgcaccggcagaacacccgcggcttctacggcgccggctggcgtcagttcgccggcgacaatcgtctcgtcgcccacgacgtctgcctcttcgagctcacgatggtggacgccgcggccggcggcggcggaaaccgccggcgacgctggagccggcggccgacgatgaccgtgcatgtcctccgtcgggtgcgtggtcgcttcgtgcttctgcgctga
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| Protein seq | MGMLKIGKNCSVCKEWQEHCYWSHMADDCKHFLTYMVGDFTESMIVPSRFANNFNGHISEVVNLKSPSGKTWSIGVANSDTGELVLRSGWKEFVDANGVQENDCLLFRYSGVSSFDVLIFDPSGCEKATPHFVENRGFGREEKSAGAEGGGRDGDKNGHHQHQLEMTPHKNSSRCRSIPSACKRGLFSDEIEQDHREEKKEGDDEDEDKDGEDRYYFCRHGGRVTEYNLSKGDKEEISRVPVPVEPGNPVLVKVIHASHLLSSRYSTVGVSPEFAGRYLGPAMAREVVMERGGGGGGGDQWHVRFVRRESSRGFHGTGWRRFARDNGLLAHDVCLFELRLVDGAGAGDRLRRRPRPTMAVHVLRRVRGRFNCSVCKEWQEHCYWSHMADHSKHFLKHMVGDFTESMTVPARFANNFNGHISEEVNLRSPSSETWSIGVANSDAGELVLQPGWKEFVDGNGIEEGDCLLVRYSGVSSSFDVLIFDPSGCEKASPHFVGSHGFGRAENSAGAEQGGRNGRRTPPIVDGDNGHRHHLEMTLHRNSCRSIPRACKRSLFSDETGGRYGEYYFSRHGRVAEYNLRKEDREEISRVPVPVQPGNPVFVQVIHSSHVRSSKYCIVGVSPEFAGKYLGAVEREVVLERASRGGEWHVLFVHRQNTRGFYGAGWRQFAGDNRLVAHDVCLFELTMVDAAAGGGGNRRRRWSRRPTMTVHVLRRVRGRFVLLR |
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| Function | B3 domain-containing protein Os03g0622100 [UniProtKB/Swiss-Prot:Q10GM4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0026350 | OsLima_03g0026350.01 | Chr03 | 26226903 | 26233301 | + | NAM | ||
| CDS seq | atgggcatgctgaaaataggcaagaactgcagtgtttgcaaggagtggcaagaacactgctactggagccatatggccgatgactgtaagcacttcttgacgtatatggttggggacttcaccgagagcatgatcgtgcctagtagatttgccaacaatttcaacgggcacatttcagaggtcgtgaatctgaagtcacctagcggcaaaacatggagcattggagtagccaacagtgacaccggtgaactagttcttcggtcaggctggaaagagttcgtggatgctaatggcgtccaggaaaatgactgcctgctcttcaggtacagtggcgtctcctccttcgatgtgctcatctttgatccgtccggctgcgagaaggcgacgccgcatttcgtcgagaaccgtggatttgggagagaagagaagtctgcaggagctgaaggaggaggcagagatggtgacaagaatggccatcaccaacaccagctggagatgacaccccacaagaacagcagcaggtgcaggagcatCcccagtgcatgtaagcgcggattattcagtgatgagatagagcaagatcatcgcgaagagaagaaggaaggggacgatgaagacgaagacaaagatggagaggacaggtactacttctgcaggcacggcgggcgagtgaccgagtacaacctgagcaagggagacaaggaggagatctcgcgcgtccccgtgccggtggagcctggcaacccggtgttggtgaaggtcatccacgccagccacctcctctccagccgctacagcacagtaggcgtgtcgccggagttcgccggcaggtacctggggccggccatggcgagggaggtggtgatggagaggggaggaggaggaggaggaggggatcagtggcacgtccggttcgtgcgccGggagagcagccgcggcttccacggcaccgggtggcgtcggttcgcccgtgacaatggcctcctcgcccacgacgtctgcctcttcgagctcaggttggtggacggcgccggcgccggcgaccgcctgcgccgccggccgaggccgacgatggccgtgcacgtcctccggcgggtgcgcggccgcttcaactgcagcgtttgcaaggagtggcaagaacactgctactggagccatatggccgaccacagtaagcacttcttgaagcatatggttggggatttcaccgagagcatgaccgtgcctgctagatttgcaaacaatttcaacgggcacatctcagaggaagtgaatctgagatctcctagcagcgaaacctggagcattggagtagccaacagcgacgccggtgaactagttcttcagcctggctggaaagagttcgtggatggcaacggcatcgaggaaggagactgcctgctcgtcaggtacagcggcgtctcctcctccttcgatgtgctcatctttgatccgtccggctgcgagaaggcgtcgccgcatttcgtcgggagccatggattcgggagagcggagaactccgccggagctgaacaaggaggcagaaacggccgccgcacgccgccgatcgtcgacggcgataatggccatcgccaccacctggagatgacgctccacaggaacagctgcaggagcatccccagagcatgcaaacgcagcttattcagtgatgaaacaggcgggcgctacggggagtactacttcagcaggcacggacgggtggccgagtacaacctgaggaaggaagacagggaggagatctcgcgcgtccccgtgccggttcagcccgggaacccggtgttcgtgcaggtcatccacagcagccacgtccgtagcagcaagtactgcattgtaggggtgtcgccggagttcgcgggtaagtatctgggggcggtggagagggaggtggtgctggagagggcgagcaggggaggggagtggcacgtcctgttcgtgcaccggcagaacacccgcggcttctacggcgccggctggcgtcagttcgccggcgacaatcgtctcgtcgcccacgacgtctgcctcttcgagctcacgatggtggacgccgcggccggcggcggcggaaaccgccggcgacgctggagccggcggccgacgatgaccgtgcatgtcctccgtcgggtgcgtggtcgcttcgtgcttctgcgctga
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| Protein seq | MGMLKIGKNCSVCKEWQEHCYWSHMADDCKHFLTYMVGDFTESMIVPSRFANNFNGHISEVVNLKSPSGKTWSIGVANSDTGELVLRSGWKEFVDANGVQENDCLLFRYSGVSSFDVLIFDPSGCEKATPHFVENRGFGREEKSAGAEGGGRDGDKNGHHQHQLEMTPHKNSSRCRSIPSACKRGLFSDEIEQDHREEKKEGDDEDEDKDGEDRYYFCRHGGRVTEYNLSKGDKEEISRVPVPVEPGNPVLVKVIHASHLLSSRYSTVGVSPEFAGRYLGPAMAREVVMERGGGGGGGDQWHVRFVRRESSRGFHGTGWRRFARDNGLLAHDVCLFELRLVDGAGAGDRLRRRPRPTMAVHVLRRVRGRFNCSVCKEWQEHCYWSHMADHSKHFLKHMVGDFTESMTVPARFANNFNGHISEEVNLRSPSSETWSIGVANSDAGELVLQPGWKEFVDGNGIEEGDCLLVRYSGVSSSFDVLIFDPSGCEKASPHFVGSHGFGRAENSAGAEQGGRNGRRTPPIVDGDNGHRHHLEMTLHRNSCRSIPRACKRSLFSDETGGRYGEYYFSRHGRVAEYNLRKEDREEISRVPVPVQPGNPVFVQVIHSSHVRSSKYCIVGVSPEFAGKYLGAVEREVVLERASRGGEWHVLFVHRQNTRGFYGAGWRQFAGDNRLVAHDVCLFELTMVDAAAGGGGNRRRRWSRRPTMTVHVLRRVRGRFVLLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0622100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g42430 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0622200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026700 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026430 | RBH | 0.0 | 0.299294 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026490 | RBH | 0.000000 | 0.0 | 0.164040 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026510 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0026310 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0416900 | RBH | 0.1102895 | 0.203004 | 0.5228245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0026090 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0420300 | RBH | 0.152193 | 0.0114235 | 2.4075465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018700 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026370 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026470 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026220 | RBH | 0.000000 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026140 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026170 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026120 | RBH | 0.0 | 0.0 | 0.000000 |
