Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0025460 | OGI:03064720 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:24895503-24897138 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agaaaacggatagagtaaactagagcaaaaacttattacaaattacggaagacgctagaaggttgaatgtgcaatggatatcacatatAaatctaacgtaaaaaaaaaaccgaaaatctgtaacggtgctacttctatgcatgtccctgagaaatctgaactgaagaaaagaaaagaaaaaaaaaagatcaggcgacggcgggcatgtccctgagccagtggtcgagcggcttgccgatggagtagacgacgaagccgatgcggcggagcttgtccgggtcgacgacgttgcggccgtcgaagaggaaggccggcttgtgcatggcgtcgtacatccgctggtagtcgagccggcggaactcgtcccactcggtgaggatgcagacggcgtgcgcgccgcgcgccgcctcgtaggcgtcccacgacacggcgacgtgcttcgccgacgacgggctcatcggctgcaggtggcgcgggtggtcccagtcgaacttgttcatcactaggtcgcgctgcacctgctcctccgtcacctgcgggtcgtagatgctgaccaccgccttgtcgccgacgagccccttgcagacgtcgatcgccggcgtctccctcgtgtcgccggtgtccttcttgaacgcgaagcccagcacggccaccttcttgccggccaccgtgttgaacatggtggacaccacccggttcacgaagcggctcttctggtagtcattgatccggatcacctggcgccagtagttggccacctccggcaagccgtagcactcgcagatgtacaccaggttgaggatgtccttctggaagcaggagccgccgaagccgacgctcgcggacaggaacctcggcccgatccgcgagtctttgccgatggagttggccacctccgACGTCGGCGCCGGTGGCCTCGCACAGCGCGGAGATGGCGTTGACGGAGGAGATGCGCTGCGCCAGGAAGGCGTTGGCGGCGAGCTTGGACAGCTCGGCGGACCAGAGGTTGGTGGTGATGATGCGGTCGTCGGGGACCCAGCGGGCGTAGATGGACTTGAGGGCGGCGACGGCGGCGCGGCCCTCGGGCGTCTCGCGGCCGCCGATGAGGACGCGGTCCGGGGAGAAGAGGTCCTGGATGGCGGTGCCCTCGGCGAGGAACTCCGGGTTGGAGAGGATCTGGTACCTGATGTTGCCGCCCTTGCTGTTGTGGGCGAGGATCTTCTCGATGGCCTCGGCGGTCTTGACGGGGACGGTGGACTTCTCGACGACGATCTTGTCGGAGCGGggagacgtcggcgatgatgcgggcggcgctctcccagtaggtgaggtcggcggccttcccggcgccgaggccgcgggtcttggtgggggtgttgacggagacgaagacgatgccggcgtcggcgacgtggcgctcgacgtcggtgctgaagaagaggttgcggccgcggcactgcctgacgacatcgtccaggccgggctcgtagatGGggaggcgctcgctgttccacccctcgatccgcggcgccgagatgtccaccaccaccacctccacgtcggggcacttgagcgcgatcaccgccatcgtcgggccgcccacgtaccccgccccgatgcagcagatcttcaccat
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| CDS seq | atggtgaagatctgctgcatcggggcggggtacgtgggcggcccgacgatggcggtgatcgcgctcaagtgccccgacgtggaggtggtggtggtggacatctcggcgccgcggatcgaggggtggaacagcgagcgcctccCCatctacgagcccggcctggacgatgtcgtcaggcagtgccgcggccgcaacctcttcttcagcaccgacgtcgagcgccacgtcgccgacgccggcatcgtcttcgtctccgtcaacacccccaccaagacccgcggcctcggcgccgggaaggccgccgacctcacctactgggagagcgccgcccgcatcatcgccgacTCCACCGTCCCCGTCAAGACCGCCGAGGCCATCGAGAAGATCCTCGCCCACAACAGCAAGGGCGGCAACATCAGGTACCAGATCCTCTCCAACCCGGAGTTCCTCGCCGAGGGCACCGCCATCCAGGACCTCTTCTCCCCGGACCGCGTCCTCATCGGCGGCCGCGAGACGCCCGAGGGCCGCGCCGCCGTCGCCGCCCTCAAGTCCATCTACGCCCGCTGGGTCCCCGACGACCGCATCATCACCACCAACCTCTGGTCCGCCGAGCTGTCCAAGCTCGCCGCCAACGCCTTCCTGGCGCAGCGCATCTCCTCCGTCAACGCCATCTCCGCGCTGCCACCGGCGCCGACGTcggaggtggccaactccatcggcaaagactcgcggatcgggccgaggttcctgtccgcgagcgtcggcttcggcggctcctgcttccagaaggacatcctcaacctggtgtacatctgcgagtgctacggcttgccggaggtggccaactactggcgccaggtgatccggatcaatgactaccagaagagccgcttcgtgaaccgggtggtgtccaccatgttcaacacggtggccggcaagaaggtggccgtgctgggcttcgcgttcaagaaggacaccggcgacacgagggagacgccggcgatcgacgtctgcaaggggctcgtcggcgacaaggcggtggtcagcatctacgacccgcaggtgacggaggagcaggtgcagcgcgacctagtgatgaacaagttcgactgggaccacccgcgccacctgcagccgatgagcccgtcgtcggcgaagcacgtcgccgtgtcgtgggacgcctacgaggcggcgcgcggcgcgcacgccgtctgcatcctcaccgagtgggacgagttccgccggctcgactaccagcggatgtacgacgccatgcacaagccggccttcctcttcgacggccgcaacgtcgtcgacccggacaagctccgccgcatcggcttcgtcgtctactccatcggcaagccgctcgaccactggctcagggacatgcccgccgtcgcctga
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| Protein seq | MVKICCIGAGYVGGPTMAVIALKCPDVEVVVVDISAPRIEGWNSERLPIYEPGLDDVVRQCRGRNLFFSTDVERHVADAGIVFVSVNTPTKTRGLGAGKAADLTYWESAARIIADSTVPVKTAEAIEKILAHNSKGGNIRYQILSNPEFLAEGTAIQDLFSPDRVLIGGRETPEGRAAVAALKSIYARWVPDDRIITTNLWSAELSKLAANAFLAQRISSVNAISALPPAPTSEVANSIGKDSRIGPRFLSASVGFGGSCFQKDILNLVYICECYGLPEVANYWRQVIRINDYQKSRFVNRVVSTMFNTVAGKKVAVLGFAFKKDTGDTRETPAIDVCKGLVGDKAVVSIYDPQVTEEQVQRDLVMNKFDWDHPRHLQPMSPSSAKHVAVSWDAYEAARGAHAVCILTEWDEFRRLDYQRMYDAMHKPAFLFDGRNVVDPDKLRRIGFVVYSIGKPLDHWLRDMPAVA |
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| Function | UDP-glucose 6-dehydrogenase 2 [UniProtKB/Swiss-Prot:B7F958] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0025460 | OsLima_03g0025460.01 | Chr03 | 24895503 | 24897138 | - | NAM | ||
| CDS seq | atggtgaagatctgctgcatcggggcggggtacgtgggcggcccgacgatggcggtgatcgcgctcaagtgccccgacgtggaggtggtggtggtggacatctcggcgccgcggatcgaggggtggaacagcgagcgcctccCCatctacgagcccggcctggacgatgtcgtcaggcagtgccgcggccgcaacctcttcttcagcaccgacgtcgagcgccacgtcgccgacgccggcatcgtcttcgtctccgtcaacacccccaccaagacccgcggcctcggcgccgggaaggccgccgacctcacctactgggagagcgccgcccgcatcatcgccgacTCCACCGTCCCCGTCAAGACCGCCGAGGCCATCGAGAAGATCCTCGCCCACAACAGCAAGGGCGGCAACATCAGGTACCAGATCCTCTCCAACCCGGAGTTCCTCGCCGAGGGCACCGCCATCCAGGACCTCTTCTCCCCGGACCGCGTCCTCATCGGCGGCCGCGAGACGCCCGAGGGCCGCGCCGCCGTCGCCGCCCTCAAGTCCATCTACGCCCGCTGGGTCCCCGACGACCGCATCATCACCACCAACCTCTGGTCCGCCGAGCTGTCCAAGCTCGCCGCCAACGCCTTCCTGGCGCAGCGCATCTCCTCCGTCAACGCCATCTCCGCGCTGCCACCGGCGCCGACGTcggaggtggccaactccatcggcaaagactcgcggatcgggccgaggttcctgtccgcgagcgtcggcttcggcggctcctgcttccagaaggacatcctcaacctggtgtacatctgcgagtgctacggcttgccggaggtggccaactactggcgccaggtgatccggatcaatgactaccagaagagccgcttcgtgaaccgggtggtgtccaccatgttcaacacggtggccggcaagaaggtggccgtgctgggcttcgcgttcaagaaggacaccggcgacacgagggagacgccggcgatcgacgtctgcaaggggctcgtcggcgacaaggcggtggtcagcatctacgacccgcaggtgacggaggagcaggtgcagcgcgacctagtgatgaacaagttcgactgggaccacccgcgccacctgcagccgatgagcccgtcgtcggcgaagcacgtcgccgtgtcgtgggacgcctacgaggcggcgcgcggcgcgcacgccgtctgcatcctcaccgagtgggacgagttccgccggctcgactaccagcggatgtacgacgccatgcacaagccggccttcctcttcgacggccgcaacgtcgtcgacccggacaagctccgccgcatcggcttcgtcgtctactccatcggcaagccgctcgaccactggctcagggacatgcccgccgtcgcctga
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| Protein seq | MVKICCIGAGYVGGPTMAVIALKCPDVEVVVVDISAPRIEGWNSERLPIYEPGLDDVVRQCRGRNLFFSTDVERHVADAGIVFVSVNTPTKTRGLGAGKAADLTYWESAARIIADSTVPVKTAEAIEKILAHNSKGGNIRYQILSNPEFLAEGTAIQDLFSPDRVLIGGRETPEGRAAVAALKSIYARWVPDDRIITTNLWSAELSKLAANAFLAQRISSVNAISALPPAPTSEVANSIGKDSRIGPRFLSASVGFGGSCFQKDILNLVYICECYGLPEVANYWRQVIRINDYQKSRFVNRVVSTMFNTVAGKKVAVLGFAFKKDTGDTRETPAIDVCKGLVGDKAVVSIYDPQVTEEQVQRDLVMNKFDWDHPRHLQPMSPSSAKHVAVSWDAYEAARGAHAVCILTEWDEFRRLDYQRMYDAMHKPAFLFDGRNVVDPDKLRRIGFVVYSIGKPLDHWLRDMPAVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0604200 | RBH | 0.0 | 0.0 | 2.432741 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g40720 | RBH | 0.0 | 0.0 | 0.545810 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0604200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0025850 | RBH | 0.065367 | 0.0 | 1.550629 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0025620 | RBH | 0.0 | 0.0 | 1.869257 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0025670 | RBH | 0.247733 | 0.0 | 2.041488 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0025680 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034980 | SBH | 4.631662 | 474.551819 | 58.950367 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0394900 | RBH | 0.1608045 | 0 | 0.0320265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0025210 | RBH | 0.0 | 0.0 | 0.986460 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0395800 | RBH | 0.0118495 | 0 | 0.0958815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035240 | SBH | 0.418480 | 1.891595 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0025490 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0025610 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0025320 | RBH | 0.0 | 0.0 | 1.011741 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0025240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G025330 | RBH | 0.0 | 0.0 | 1.171573 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0025300 | RBH | 0.0 | 0.0 | 7.372334 |
