Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0024640 | OGI:03061540 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:23851087-23854175 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaccaacccggctattccattcccctctcatttggaccccaaggcccatcccaggtcgcacgctgatctccgcacccgccacccgcaatggtggtgtccgattccccgaaaccccaaccaaccccctcgccgccggcgccacccccacttccggtcccggcggcggcggggacgacgatgggggagctggaggcggccatcgaggcgctcgccgccaagaagctgcgcctccgcgaggccttcgactgcctcgtcgcctgctcccccatccccatccccttccgctgggacgacatcgacgcccacgtctcgtccatccagtcctccatcgccggccgcttccgccagttccaggcgctccagaccgccgccaccgctggaataacggcggccccggacaccagcaacgccagcagccgcgtcgagcgttcggtcgaacaccttgtggtggtggtgGAgggccaagagtcccacgtcgcgcgccatgaggacggtggaaacggtgagggtgagggtgagggtgagggtgagggtgagggtgggctaggcaaggaggtggctatggacgtagaatccgaggaggagaacggcatggtggtggaggtggcaagcgaggcgcctcgcggagaagacggtgaggtgaaggaggaggacgagaagatgggggggccaatcaatgcgtctcctcctagcgaagaaatccatgggaagggcgcggacatgtcgagaagatgggggaatcccatggaaatgtcggccgacgtggacgatgcgaagaccaagacgacggcgacggcggcggcggcggaactgacggcgatggcgatctctccgattccgggattcacaggcagagggggcgcggaggcgtcgctgaggcggtctctcgcggcggcgtgcgcgagcatggactcgtcgagcctggcacgcatcctgtgctcgtccggcagcagcagcagcagccacgccaccctcgccgcacgtcacttccgcccggcgcttctcgccgccgccgaacccgcggcgctcgtcgtccgcgccgtcagggacctgctggccgggacggcgcccatcagggacagcgcgtgggagagctgcgtggagctgctcagctgcgtgcccaagctcgccgtggcgccgtcgccgggcacgatggagcaggccaatcgcttggccgaggactggaaggagatgatcgggaggaccgaaagttgcagcatgaacctcggccggttggctgtatggggccttctcaactttcttgtctcctacaacattgtcctggagttcgacgcggaagaaatcatccatttctttggcactctcccggacgacAagaagcagtgttgcatctccctctgcaagtatcttggactgattgataagatggctggtacagtttcaatgcctcttactcatactcattgctcaactataatttcatatgtttgtaggcaacttatgctacacatctagcgcaattgtcgcggatatggaaattcattgatttgtgcttgtgttcacattctttaatgataagcttgtttaactccatgtcccaagccttcttatgttataTttagtggccattaatttgtttatcatctaactgaatcagtagaaattatgttttacacttttagtcacagttaatacagagcattaatttgcatcctaaaatggtgacctcaacattatatttgcatttgctagtaaaaaagttatctcatgaacattttctatatccaaaaagggttccatgtggacttatgattatctctcattatttcagattcagttggtcatttgattgaacatggacaacaacttgtcgctatcagattggcatgcactttgaatttgacagacaaatacactccactttccatcatggaagactatattcagaatgctaaggagactgctcaagagatactgagcatggaaagtgattcagagtcactggtatgtccctttttatgcagtagctatctcatttatattttctactcgtttttctatccaaaatttcaaatccgtgtgaatatgaatggaagaatagttcattcatgtgctctagagcatgtagctcttcacgttgcagagttagaaaaaaaaaactatattcctttttctaatgtaaccctcttatgatttaaaggtaaacaactggtgtttccggctttgtaaaaactgtactgcacaacattctgaagcacgtaattaggatgttttcaatgtaatgatttatttaggatgtagtggagtagtgagtaatttcaaattatatattcatattgcttttagAAaatatcatattcaatttgtgaaaaatcactgcagatcatttggcatggtaaatgattgcttccacatactgatatacaaatatgcttattttaaaattggtttaacacacctgatgcatcttgtattgagcagaaactgtccatgtcaaagcaggtcaatgctctaatattgtcatggagggttgttggtgaatgcaatattgactctgtccattgtgatagaattaaggcagaaattacccagctgttgcataaatatgcaaacaagaggcacagcctagaagaacttccttctgatacttctagtccacatcagaaacatcaccaaatgtcgcaagagcagcaccactggcagcaaaagcatcgagaggaacaacagcagcagtttcaaaatcaatccaaggaacaagaacaagagagaaggatgcaaaagttacgagagctgaggaaaaagaaaaacaagagAactcagcgcaggaagcggaagcaaaatgcacaagtgatgaagcagcatcaatttgagaaacagcgaaaactatatcacgctggttcatttaccaattctcaaagctatgtcagatcagaaattcaccaccacctcagccagcatttttcaggaactataggaACacctgttgcaccatataccggacctttttggtagctagggtccatatataatggaccgggttcatcctgcctacattcaactattcaagtcagagtagtagtacttgataccattactgtttgactgaactgaagataaagatagtagaa
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| CDS seq | atggtggtgtccgattccccgaaaccccaaccaaccccctcgccgccggcgccacccccacttccggtcccggcggcggcggggacgacgatgggggagctggaggcggccatcgaggcgctcgccgccaagaagctgcgcctccgcgaggccttcgactgcctcgtcgcctgctcccccatccccatccccttccgctgggacgacatcgacgcccacgtctcgtccatccagtcctccatcgccggccgcttccgccagttccaggcgctccagaccgccgccaccgctggaataacggcggccccggacaccagcaacgccagcagccgcgtcgagcgttcggtcgaacaccttgtggtggtggtgGAgggccaagagtcccacgtcgcgcgccatgaggacggtggaaacggtgagggtgagggtgagggtgagggtgagggtgagggtgggctaggcaaggaggtggctatggacgtagaatccgaggaggagaacggcatggtggtggaggtggcaagcgaggcgcctcgcggagaagacggtgaggtgaaggaggaggacgagaagatgggggggccaatcaatgcgtctcctcctagcgaagaaatccatgggaagggcgcggacatgtcgagaagatgggggaatcccatggaaatgtcggccgacgtggacgatgcgaagaccaagacgacggcgacggcggcggcggcggaactgacggcgatggcgatctctccgattccgggattcacaggcagagggggcgcggaggcgtcgctgaggcggtctctcgcggcggcgtgcgcgagcatggactcgtcgagcctggcacgcatcctgtgctcgtccggcagcagcagcagcagccacgccaccctcgccgcacgtcacttccgcccggcgcttctcgccgccgccgaacccgcggcgctcgtcgtccgcgccgtcagggacctgctggccgggacggcgcccatcagggacagcgcgtgggagagctgcgtggagctgctcagctgcgtgcccaagctcgccgtggcgccgtcgccgggcacgatggagcaggccaatcgcttggccgaggactggaaggagatgatcgggaggaccgaaagttgcagcatgaacctcggccggttggctgtatggggccttctcaactttcttgtctcctacaacattgtcctggagttcgacgcggaagaaatcatccatttctttggcactctcccggacgacAagaagcagtgttgcatctccctctgcaagtatcttggactgattgataagatggctgattcagttggtcatttgattgaacatggacaacaacttgtcgctatcagattggcatgcactttgaatttgacagacaaatacactccactttccatcatggaagactatattcagaatgctaaggagactgctcaagagatactgagcatggaaagtgattcagagtcactgaaactgtccatgtcaaagcaggtcaatgctctaatattgtcatggagggttgttggtgaatgcaatattgactctgtccattgtgatagaattaaggcagaaattacccagctgttgcataaatatgcaaacaagaggcacagcctagaagaacttccttctgatacttctagtccacatcagaaacatcaccaaatgtcgcaagagcagcaccactggcagcaaaagcatcgagaggaacaacagcagcagtttcaaaatcaatccaaggaacaagaacaagagagaaggatgcaaaagttacgagagctgaggaaaaagaaaaacaagagAactcagcgcaggaagcggaagcaaaatgcacaagtgatgaagcagcatcaatttgagaaacagcgaaaactatatcacgctggttcatttaccaattctcaaagctatgtcagatcagaaattcaccaccacctcagccagcatttttcaggaactataggaACacctgttgcaccatataccggacctttttggtag
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| Protein seq | MVVSDSPKPQPTPSPPAPPPLPVPAAAGTTMGELEAAIEALAAKKLRLREAFDCLVACSPIPIPFRWDDIDAHVSSIQSSIAGRFRQFQALQTAATAGITAAPDTSNASSRVERSVEHLVVVVEGQESHVARHEDGGNGEGEGEGEGEGEGGLGKEVAMDVESEEENGMVVEVASEAPRGEDGEVKEEDEKMGGPINASPPSEEIHGKGADMSRRWGNPMEMSADVDDAKTKTTATAAAAELTAMAISPIPGFTGRGGAEASLRRSLAAACASMDSSSLARILCSSGSSSSSHATLAARHFRPALLAAAEPAALVVRAVRDLLAGTAPIRDSAWESCVELLSCVPKLAVAPSPGTMEQANRLAEDWKEMIGRTESCSMNLGRLAVWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDDKKQCCISLCKYLGLIDKMADSVGHLIEHGQQLVAIRLACTLNLTDKYTPLSIMEDYIQNAKETAQEILSMESDSESLKLSMSKQVNALILSWRVVGECNIDSVHCDRIKAEITQLLHKYANKRHSLEELPSDTSSPHQKHHQMSQEQHHWQQKHREEQQQQFQNQSKEQEQERRMQKLRELRKKKNKRTQRRKRKQNAQVMKQHQFEKQRKLYHAGSFTNSQSYVRSEIHHHLSQHFSGTIGTPVAPYTGPFW |
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| Function | FRIGIDA-like protein 3 [UniProtKB/Swiss-Prot:Q67ZB3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0024640 | OsLima_03g0024640.01 | Chr03 | 23851087 | 23854175 | + | NAM | ||
| CDS seq | atggtggtgtccgattccccgaaaccccaaccaaccccctcgccgccggcgccacccccacttccggtcccggcggcggcggggacgacgatgggggagctggaggcggccatcgaggcgctcgccgccaagaagctgcgcctccgcgaggccttcgactgcctcgtcgcctgctcccccatccccatccccttccgctgggacgacatcgacgcccacgtctcgtccatccagtcctccatcgccggccgcttccgccagttccaggcgctccagaccgccgccaccgctggaataacggcggccccggacaccagcaacgccagcagccgcgtcgagcgttcggtcgaacaccttgtggtggtggtgGAgggccaagagtcccacgtcgcgcgccatgaggacggtggaaacggtgagggtgagggtgagggtgagggtgagggtgagggtgggctaggcaaggaggtggctatggacgtagaatccgaggaggagaacggcatggtggtggaggtggcaagcgaggcgcctcgcggagaagacggtgaggtgaaggaggaggacgagaagatgggggggccaatcaatgcgtctcctcctagcgaagaaatccatgggaagggcgcggacatgtcgagaagatgggggaatcccatggaaatgtcggccgacgtggacgatgcgaagaccaagacgacggcgacggcggcggcggcggaactgacggcgatggcgatctctccgattccgggattcacaggcagagggggcgcggaggcgtcgctgaggcggtctctcgcggcggcgtgcgcgagcatggactcgtcgagcctggcacgcatcctgtgctcgtccggcagcagcagcagcagccacgccaccctcgccgcacgtcacttccgcccggcgcttctcgccgccgccgaacccgcggcgctcgtcgtccgcgccgtcagggacctgctggccgggacggcgcccatcagggacagcgcgtgggagagctgcgtggagctgctcagctgcgtgcccaagctcgccgtggcgccgtcgccgggcacgatggagcaggccaatcgcttggccgaggactggaaggagatgatcgggaggaccgaaagttgcagcatgaacctcggccggttggctgtatggggccttctcaactttcttgtctcctacaacattgtcctggagttcgacgcggaagaaatcatccatttctttggcactctcccggacgacAagaagcagtgttgcatctccctctgcaagtatcttggactgattgataagatggctgattcagttggtcatttgattgaacatggacaacaacttgtcgctatcagattggcatgcactttgaatttgacagacaaatacactccactttccatcatggaagactatattcagaatgctaaggagactgctcaagagatactgagcatggaaagtgattcagagtcactgaaactgtccatgtcaaagcaggtcaatgctctaatattgtcatggagggttgttggtgaatgcaatattgactctgtccattgtgatagaattaaggcagaaattacccagctgttgcataaatatgcaaacaagaggcacagcctagaagaacttccttctgatacttctagtccacatcagaaacatcaccaaatgtcgcaagagcagcaccactggcagcaaaagcatcgagaggaacaacagcagcagtttcaaaatcaatccaaggaacaagaacaagagagaaggatgcaaaagttacgagagctgaggaaaaagaaaaacaagagAactcagcgcaggaagcggaagcaaaatgcacaagtgatgaagcagcatcaatttgagaaacagcgaaaactatatcacgctggttcatttaccaattctcaaagctatgtcagatcagaaattcaccaccacctcagccagcatttttcaggaactataggaACacctgttgcaccatataccggacctttttggtag
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| Protein seq | MVVSDSPKPQPTPSPPAPPPLPVPAAAGTTMGELEAAIEALAAKKLRLREAFDCLVACSPIPIPFRWDDIDAHVSSIQSSIAGRFRQFQALQTAATAGITAAPDTSNASSRVERSVEHLVVVVEGQESHVARHEDGGNGEGEGEGEGEGEGGLGKEVAMDVESEEENGMVVEVASEAPRGEDGEVKEEDEKMGGPINASPPSEEIHGKGADMSRRWGNPMEMSADVDDAKTKTTATAAAAELTAMAISPIPGFTGRGGAEASLRRSLAAACASMDSSSLARILCSSGSSSSSHATLAARHFRPALLAAAEPAALVVRAVRDLLAGTAPIRDSAWESCVELLSCVPKLAVAPSPGTMEQANRLAEDWKEMIGRTESCSMNLGRLAVWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDDKKQCCISLCKYLGLIDKMADSVGHLIEHGQQLVAIRLACTLNLTDKYTPLSIMEDYIQNAKETAQEILSMESDSESLKLSMSKQVNALILSWRVVGECNIDSVHCDRIKAEITQLLHKYANKRHSLEELPSDTSSPHQKHHQMSQEQHHWQQKHREEQQQQFQNQSKEQEQERRMQKLRELRKKKNKRTQRRKRKQNAQVMKQHQFEKQRKLYHAGSFTNSQSYVRSEIHHHLSQHFSGTIGTPVAPYTGPFW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0588600 | RBH | 0.0 | 0.0 | 0.459302 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g39160 | RBH | 0.0 | 0.0 | 0.118581 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0588600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0024960 | RBH | 0.0 | 0.000000 | 0.215971 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0024750 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024810 | RBH | 0.0 | 0.0 | 0.763743 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0024860 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0024570 | RBH | 0.000000 | 1.560365 | 2.685428 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0376900 | RBH | 0.1693485 | 0.1078025 | 0.965678 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0024350 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0378300 | RBH | 0.3829785 | 0.178862 | 2.472593 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0024610 | RBH | 0.236192 | 0.086607 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0024670 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0024750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0024520 | RBH | 0.0 | 0.0 | 0.102263 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024410 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024490 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024460 | RBH | 0.0 | 0.0 | 0.693693 |
