Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0022740 | OGI:04056580 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:19791518-19794598 | ||||||||
| Gene Symbol | OsI-BAK1, I-BAK1 | ||||||||||
| DNA seq | aaatttccaccgcccaccagCCAccaccaccaccagcgggccttcaccctcttctactagtcttcttcctcctctcgccctttcacaccggagccatagccggcgggagaggccagcccgactgccagagcctctacctacgactatccgcggccggatggcgccccgagtgtccctgctcgccgccggcgccgtggccgtggccgtggtcctgcttctcgccgcgccggcgcgggcgtccaacgacgagggggacgcgctgtacgcgctgcggacgaggctgtcggatcccaacggcgtgctgcagagctgggacccgaccctcgtcaacccctgcacctggttccatgtcacctgcgaccacgccagccgcgtcgtccgcctgtgagttcctctccctcccgaaCccccccgccgcctcttcaagattttccaactccgatgcccaaattgtttggtccccgaccgtgcgaaagattgctgattggttctccacttctcttgcttatcgaatttggaatctgtcaactgtgcgtgctgctgtgattaatggtcggggcttagtttccgtctattctaaattaagtcaattaggtgatcatctgctgctagctacgtatagttattactggtttgatttgttcgatgaactcgtcaaaaatcaacacttggttcaagatctcgacgcaccaactcttctgcaatagcaggtcaacttataatttgcggactggcaaaagaaatgacctttaatttagtctttcaattgagttgcttcttgttcacgaatttcttggtttgctgctccggtagcaaaaatcgtgttcagaaggtagcaatccgcgtgttcagaaggatcgcacactaaatccttaatggtctgactattttatttgtggttaatgtttcagggatttaggaaactccaacatctccggctcgattggccctgagctaggccgtcttgtgaacctccaatacctgtatgggcatattacgtgcaagttttttctgttcaaatggcgagaaagggatatatgaccatgatttaatcagtaaaaatcaaattttgatttgcagggagctctacaggaacaatcttaacggtgagatcccaaaagaattgggcaatctcaagaatttgatcagcttggatttgtatgccaacaagctcactggaacaatccccaagtcgctttccaagctcggctcgctgagattcatgtatgtaccatcaccacctgattatattacagctcttgcttaatacgaagtcatgtcatgtctagtgcaaataaatgatcggtgaatccaaatatctggacgcttgtgatcacaatttcttcaactgatatgaaatccacaaatctctgttcatttggttttatgcatggttaagtagttttttcttataccaatgcacattttttgttagataatgttaccaatgcacatttaagtaggagtaacttttatcaaaagaaacaggaactaaggaagtaggcttcaactcattattcatatttgtacagtgtttcatatgctaccactgaaagcttttggtttgtgatatcaggcggttgaacaataacaagcttgctggatcaattccaagggagctggccaaactatccaacctgaaagtcatgtgagtatAaaactatttattttaaattagttatttccttgactctctatggttactgaatactgattgctctaagttcttgtgaaatgtagtgacttgtctaacaatgacctctgtggaactattcctgttgacggtcccttctcaaccttccctcttcgaaggtataccttaaaagttaatttactattgaaatgcattaggttgaatttgatgcttgactaaaacaaatgtcagttaattcttacattgcccattgacatgacatttgtgatttgtattggttaagtttgttggaatggtttcagtcaaataagtttggtcactattttgctactagtttcgcggagtttagttctaaacttattcttcaaacttccaatttttccatcacatcaaaactttcccacacacacaaactttcaacttttccatcacatcgttccaatttcaaccaaacttctaattttggcttgaactaaacacaccctttgtatccctcattaccactggacctttcacataaactgacagctaactcatcttattctgcagctttgagaacaacaacaggctcaacggcccagaGCTgcaaggtttggttccttatgactttggatgttaagagctccatgttggtgaagtagcacagcaatgcatgtcgtccgttgataaatggaaaagaatatagtagtacaaataggaaagctagcatgtatgttgtgagttcatatatgcagcagagctgcagagctgaagagggaaggttaatgtacccaggcagcatgaacaaagaatgtattcagagaagttttacttatattcatgatacaggtactatgtatgtaaatttcaagctgctttactgcagtcgtgtttttaggtgatgcaaatcctagcgacacgaattaacgtacatattctacattctcccagtcccaccaacggttgaaataccagcattgcatgttaaaagaatcagaatacatgagagtaattcaattatcttagtggaaaaaaagagctaactacacaatcaggtatcagctctacataatgagcttgatgctgtttattatatcatgcctgacataggaagcgattacaatattattcatgagataaaagaacacatatgcacactattctcgttaaaaaaaatggctgatgatgtcggttcactagtgattgttaaatcctgcAaaaatgatttatcaaccaatcaaacccatcgcttggtattagactcatcttctatcaaccattctactcaatacaatgcccccaagagcacaaccaaaattgaacactgcaactcgaaatgcaatggttatactgcaactatttcgcagatgattctgctggtgatctcccatatagctggaacagcaaagaggatttcaacatctgaggttccctctcaagtgctgcga
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| CDS seq | atggcgccccgagtgtccctgctcgccgccggcgccgtggccgtggccgtggtcctgcttctcgccgcgccggcgcgggcgtccaacgacgagggggacgcgctgtacgcgctgcggacgaggctgtcggatcccaacggcgtgctgcagagctgggacccgaccctcgtcaacccctgcacctggttccatgtcacctgcgaccacgccagccgcgtcgtccgcctggatttaggaaactccaacatctccggctcgattggccctgagctaggccgtcttgtgaacctccaatacctggagctctacaggaacaatcttaacggtgagatcccaaaagaattgggcaatctcaagaatttgatcagcttggatttgtatgccaacaagctcactggaacaatccccaagtcgctttccaagctcggctcgctgagattcatgcggttgaacaataacaagcttgctggatcaattccaagggagctggccaaactatccaacctgaaagtcattgacttgtctaacaatgacctctgtggaactattcctgttgacggtcccttctcaaccttccctcttcgaagctttgagaacaacaacaggctcaacggcccagaGCTgcaaggtttggttccttatgactttggatgttaa
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| Protein seq | MAPRVSLLAAGAVAVAVVLLLAAPARASNDEGDALYALRTRLSDPNGVLQSWDPTLVNPCTWFHVTCDHASRVVRLDLGNSNISGSIGPELGRLVNLQYLELYRNNLNGEIPKELGNLKNLISLDLYANKLTGTIPKSLSKLGSLRFMRLNNNKLAGSIPRELAKLSNLKVIDLSNNDLCGTIPVDGPFSTFPLRSFENNNRLNGPELQGLVPYDFGC |
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| Function | Leucine-rich repeat protein 1 [UniProtKB/Swiss-Prot:Q9FPJ5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0022740 | OsLima_03g0022740.01 | Chr03 | 19791518 | 19794598 | + | NAM | ||
| CDS seq | atggcgccccgagtgtccctgctcgccgccggcgccgtggccgtggccgtggtcctgcttctcgccgcgccggcgcgggcgtccaacgacgagggggacgcgctgtacgcgctgcggacgaggctgtcggatcccaacggcgtgctgcagagctgggacccgaccctcgtcaacccctgcacctggttccatgtcacctgcgaccacgccagccgcgtcgtccgcctggatttaggaaactccaacatctccggctcgattggccctgagctaggccgtcttgtgaacctccaatacctggagctctacaggaacaatcttaacggtgagatcccaaaagaattgggcaatctcaagaatttgatcagcttggatttgtatgccaacaagctcactggaacaatccccaagtcgctttccaagctcggctcgctgagattcatgcggttgaacaataacaagcttgctggatcaattccaagggagctggccaaactatccaacctgaaagtcattgacttgtctaacaatgacctctgtggaactattcctgttgacggtcccttctcaaccttccctcttcgaagctttgagaacaacaacaggctcaacggcccagaGCTgcaaggtttggttccttatgactttggatgttaa
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| Protein seq | MAPRVSLLAAGAVAVAVVLLLAAPARASNDEGDALYALRTRLSDPNGVLQSWDPTLVNPCTWFHVTCDHASRVVRLDLGNSNISGSIGPELGRLVNLQYLELYRNNLNGEIPKELGNLKNLISLDLYANKLTGTIPKSLSKLGSLRFMRLNNNKLAGSIPRELAKLSNLKVIDLSNNDLCGTIPVDGPFSTFPLRSFENNNRLNGPELQGLVPYDFGC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.315952 | 0.993714 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0440900 | RBH | 13.154531 | 11.004930 | 23.358727 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g32580 | RBH | 8.105267 | 6.763444 | 5.492181 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0440900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022990 | RBH | 3.416348 | 106.965279 | 22.492460 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022880 | RBH | 1.033957 | 13.479699 | 8.436419 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022930 | RBH | 6.084869 | 51.091965 | 25.039738 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0022920 | RBH | 1.632584 | 1.469880 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0022690 | RBH | 36.487972 | 61.352776 | 65.073059 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0056900 | SBH | 0.077009 | 0.213037 | 0.6367415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0022440 | RBH | 2.148400 | 4.906364 | 2.439848 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0309200 | RBH | 34.608833 | 227.7212525 | 15.297221 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004550 | SBH | 0.022579 | 0.127643 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0022730 | RBH | 2.734318 | 78.277954 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022850 | RBH | 28.879623 | 78.159470 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0022670 | RBH | 4.471890 | 5.452944 | 4.265264 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0022530 | RBH | 1.990411 | 13.395518 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G022500 | RBH | 3.310756 | 13.217789 | 7.400646 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0022440 | RBH | 6.611960 | 119.099159 | 29.836306 |
