Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0020780 | OGI:03043900 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:17225941-17228410 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttccatggtaatacacatttatttttataaggtgtaacatgtagctataatttctactgcaaaggcgtcctatggtcggtgagtttatacataataatgttgtacaaaaagataatgatctgaagttctctaattacaaaggtaacagagaagaagacaagaaatgcaattactgacacactgatatcttcttttgtaggatactcagtgccattaaagaagaacccagtgccatttttaggacgaggatgacctgcagctgaacgccatgacagtagtggatcaccaagaaaagatagctcactgaaagtggagagctgaccactgcttggaacctcgcccgtgagaagaggattgtatgacacgttgaattgactcagtttagagagcttttcaaggctcgacggtagtgagccagagaaattattgcatgacaaatcgaggctctcaatggaacccaaattgcctatctcgaacggaatctcacccgaaatagaattgttcgatgcattcaaagaaaccagttgaagagagccaatctctgatggtaggtgcccagagaggcggttgccatcgagaaggagcaagctgatgttcttcatggcaccgattgcagagggtatctgcccagacagcagattacctgacaactgaacataccctaatgctgttcgtaatggagaagatgctggaagtatgtcataccccatcaacagtcggttccatatggtgcggcagttcttgtgtgagaacatcatcgattggacatagtcaaactctgggtaacttgatgggacccaacggtatacagcaaggcatttgctggtgacagatttcatcagtgaagggttcttctgattcttggcaaaggttgagctggggttcctccccattcctgccatctctggtgggatctgtccagatagccggtttccgacaaggttgagccaaagaaggctagtgcagtttccaatctccctagggatttctcctgaaagttgattcccagcaagcatcaacaagagaagcgatgtcaaattaccgatgcttggtggaatctcaccggagaggctattgtatgacaagtccaatgcttggagattcacaagctgaccatatgatggagggattgtaccagagaagttattctccgcaagcatcagggccttgatgctacccatactagcgatctcagtaggcaacttgccattgaaattgttaaagctgaggtcaaggagggccaactttggcaaccctagtataccagaggagacaatgcctccactgtaattattctcttgtagcacaagatttgtcaggcttgtcaattttccaagaacttgttgcacctcccctccaaagttgttgtcactgatttccaaatatttcaagctggtgcagttcatcagctcaagtggtatctcacgatcaaagtggttgctcgtgagaacgagttcctcaagcccatggattgagccaattcctggtggtatagatccattgaagtgattgtcccatatcgacaggtatgtcaaaccggcgcaatttgcgattgaactcgggaaattgccatagaaatgattactggagagatctagtaactggagcttgcaccccgtggaaaaagttcttgaagagatgctcccagcgaagttgttctttccagccttgaactgtctaagccttgcaattccattccagacgttgccagtgaagctgttccagctgagatcaacatcctggagcttcaagcagttgttgaacaatccacttatacttcctgtcaggttattgctggacaagttgatagcacttaggttgcggcagattgctgggaagtttgcgctaatgccgccttcgaaccgattttgggacacatctagtgtctgcaggttggcgaggctggagacgtcgagaataccactgatgagattgtaagataagtctaggtactggagatgcaggcaattcttgagatcatcatgcagctccccagtgatgctgtttgctgagaggtccaagtgtgtgagcccactgaggcgtgacaggttttggaaggctggaccagatatatttgagtttgaaagatcgagaaaattaaccctgccagaggcatcacaaccaacaccttgccaatggcatggtgaggtccctgactctggccaactgttatacccaccatggtttatcgggttctgaaactgtaaaaagttcttgagctcaagaagaacttccctatcactctgtccaagaattacctcagctgttgaagaaacacagcaactaaactcagaagatatcaagaacaagaagaagaaataactagataatcatgcttgaagtgttttagagttgagtgcaggaacataccaatgataagtgcatggaagaatgttttaaggatctgatgaaaaaggggcatggctcaaggacgagtgtagctagtttgcactgggaataggattgctat
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| CDS seq | atgcccctttttcatcagatccttaaaacattcttccatgcacttatcattgctgaggtaattcttggacagagtgatagggaagttcttcttgagctcaagaactttttacagtttcagaacccgataaaccatggtgggtataacagttggccagagtcagggacctcaccatgccattggcaaggtgttggttgtgatgcctctggcagggttaattttctcgatctttcaaactcaaatatatctggtccagccttccaaaacctgtcacgcctcagtgggctcacacacttggacctctcagcaaacagcatcactggggagctgcatgatgatctcaagaattgcctgcatctccagtacctagacttatcttacaatctcatcagtggtattctcgacgtctccagcctcgccaacctgcagacactagatgtgtcccaaaatcggttcgaaggcggcattagcgcaaacttcccagcaatctgccgcaacctaagtgctatcaacttgtccagcaataacctgacaggaagtataagtggattgttcaacaactgcttgaagctccaggatgttgatctcagctggaacagcttcactggcaacgtctggaatggaattgcaaggcttagacagttcaaggctggaaagaacaacttcgctgggagcatctcttcaagaactttttccacggggtgcaagctccagttactagatctctccagtaatcatttctatggcaatttcccgagttcaatcgcaaattgcgccggtttgacatacctgtcgatatgggacaatcacttcaatggatctataccaccaggaattggctcaatccatgggcttgaggaactcgttctcacgagcaaccactttgatcgtgagataccacttgagctgatgaactgcaccagcttgaaatatttggaaatcagtgacaacaactttggaggggaggtgcaacaagttcttggaaaattgacaagcctgacaaatcttgtgctacaagagaataattacagtggaggcattgtctcctctggtatactagggttgccaaagttggccctccttgacctcagctttaacaatttcaatggcaagttgcctactgagatcgctagtatgggtagcatcaaggccctgatgcttgcggagaataacttctctggtacaatccctccatcatatggtcagcttgtgaatctccaagcattggacttgtcatacaatagcctctccggtgagattccaccaagcatcggtaatttgacatcgcttctcttgttgatgcttgctgggaatcaactttcaggagaaatccctagggagattggaaactgcactagccttctttggctcaaccttgtcggaaaccggctatctggacagatcccaccagagatggcaggaatggggaggaaccccagctcaacctttgccaagaatcagaagaacccttcactgatgaaatctgtcaccagcaaatgccttgctgtataccgttgggtcccatcaagttacccagagtttgactatgtccaatcgatgatgttctcacacaagaactgccgcaccatatggaaccgactgttgatggggtatgacatacttccagcatcttctccattacgaacagcattagggtatgttcagttgtcaggtaatctgctgtctgggcagataccctctgcaatcggtgccatgaagaacatcagcttgctccttctcgatggcaaccgcctctctgggcacctaccatcagagattggctctcttcaactggtttctttgaatgcatcgaacaattctatttcgggtgagattccgttcgagataggcaatttgggttccattgagagcctcgatttgtcatgcaataatttctctggctcactaccgtcgagccttgaaaagctctctaaactgagtcaattcaacgtgtcatacaatcctcttctcacgggcgaggttccaagcagtggtcagctctccactttcagtgagctatcttttcttggtgatccactactgtcatggcgttcagctgcaggtcatcctcgtcctaaaaatggcactgggttcttctttaatggcactgagtatcctacaaaagaagatatcagtgtgtcagtaattgcatttcttgtcttcttctctgttacctttgtaattagagaacttcagatcattatctttttgtacaacattattatgtataaactcaccgaccataggacgcctttgcagtag
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| Protein seq | MPLFHQILKTFFHALIIAEVILGQSDREVLLELKNFLQFQNPINHGGYNSWPESGTSPCHWQGVGCDASGRVNFLDLSNSNISGPAFQNLSRLSGLTHLDLSANSITGELHDDLKNCLHLQYLDLSYNLISGILDVSSLANLQTLDVSQNRFEGGISANFPAICRNLSAINLSSNNLTGSISGLFNNCLKLQDVDLSWNSFTGNVWNGIARLRQFKAGKNNFAGSISSRTFSTGCKLQLLDLSSNHFYGNFPSSIANCAGLTYLSIWDNHFNGSIPPGIGSIHGLEELVLTSNHFDREIPLELMNCTSLKYLEISDNNFGGEVQQVLGKLTSLTNLVLQENNYSGGIVSSGILGLPKLALLDLSFNNFNGKLPTEIASMGSIKALMLAENNFSGTIPPSYGQLVNLQALDLSYNSLSGEIPPSIGNLTSLLLLMLAGNQLSGEIPREIGNCTSLLWLNLVGNRLSGQIPPEMAGMGRNPSSTFAKNQKNPSLMKSVTSKCLAVYRWVPSSYPEFDYVQSMMFSHKNCRTIWNRLLMGYDILPASSPLRTALGYVQLSGNLLSGQIPSAIGAMKNISLLLLDGNRLSGHLPSEIGSLQLVSLNASNNSISGEIPFEIGNLGSIESLDLSCNNFSGSLPSSLEKLSKLSQFNVSYNPLLTGEVPSSGQLSTFSELSFLGDPLLSWRSAAGHPRPKNGTGFFFNGTEYPTKEDISVSVIAFLVFFSVTFVIRELQIIIFLYNIIMYKLTDHRTPLQ |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g74360 [UniProtKB/Swiss-Prot:C0LGJ1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0020780 | OsLima_03g0020780.01 | Chr03 | 17225941 | 17228410 | - | NAM | ||
| CDS seq | atgcccctttttcatcagatccttaaaacattcttccatgcacttatcattgctgaggtaattcttggacagagtgatagggaagttcttcttgagctcaagaactttttacagtttcagaacccgataaaccatggtgggtataacagttggccagagtcagggacctcaccatgccattggcaaggtgttggttgtgatgcctctggcagggttaattttctcgatctttcaaactcaaatatatctggtccagccttccaaaacctgtcacgcctcagtgggctcacacacttggacctctcagcaaacagcatcactggggagctgcatgatgatctcaagaattgcctgcatctccagtacctagacttatcttacaatctcatcagtggtattctcgacgtctccagcctcgccaacctgcagacactagatgtgtcccaaaatcggttcgaaggcggcattagcgcaaacttcccagcaatctgccgcaacctaagtgctatcaacttgtccagcaataacctgacaggaagtataagtggattgttcaacaactgcttgaagctccaggatgttgatctcagctggaacagcttcactggcaacgtctggaatggaattgcaaggcttagacagttcaaggctggaaagaacaacttcgctgggagcatctcttcaagaactttttccacggggtgcaagctccagttactagatctctccagtaatcatttctatggcaatttcccgagttcaatcgcaaattgcgccggtttgacatacctgtcgatatgggacaatcacttcaatggatctataccaccaggaattggctcaatccatgggcttgaggaactcgttctcacgagcaaccactttgatcgtgagataccacttgagctgatgaactgcaccagcttgaaatatttggaaatcagtgacaacaactttggaggggaggtgcaacaagttcttggaaaattgacaagcctgacaaatcttgtgctacaagagaataattacagtggaggcattgtctcctctggtatactagggttgccaaagttggccctccttgacctcagctttaacaatttcaatggcaagttgcctactgagatcgctagtatgggtagcatcaaggccctgatgcttgcggagaataacttctctggtacaatccctccatcatatggtcagcttgtgaatctccaagcattggacttgtcatacaatagcctctccggtgagattccaccaagcatcggtaatttgacatcgcttctcttgttgatgcttgctgggaatcaactttcaggagaaatccctagggagattggaaactgcactagccttctttggctcaaccttgtcggaaaccggctatctggacagatcccaccagagatggcaggaatggggaggaaccccagctcaacctttgccaagaatcagaagaacccttcactgatgaaatctgtcaccagcaaatgccttgctgtataccgttgggtcccatcaagttacccagagtttgactatgtccaatcgatgatgttctcacacaagaactgccgcaccatatggaaccgactgttgatggggtatgacatacttccagcatcttctccattacgaacagcattagggtatgttcagttgtcaggtaatctgctgtctgggcagataccctctgcaatcggtgccatgaagaacatcagcttgctccttctcgatggcaaccgcctctctgggcacctaccatcagagattggctctcttcaactggtttctttgaatgcatcgaacaattctatttcgggtgagattccgttcgagataggcaatttgggttccattgagagcctcgatttgtcatgcaataatttctctggctcactaccgtcgagccttgaaaagctctctaaactgagtcaattcaacgtgtcatacaatcctcttctcacgggcgaggttccaagcagtggtcagctctccactttcagtgagctatcttttcttggtgatccactactgtcatggcgttcagctgcaggtcatcctcgtcctaaaaatggcactgggttcttctttaatggcactgagtatcctacaaaagaagatatcagtgtgtcagtaattgcatttcttgtcttcttctctgttacctttgtaattagagaacttcagatcattatctttttgtacaacattattatgtataaactcaccgaccataggacgcctttgcagtag
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| Protein seq | MPLFHQILKTFFHALIIAEVILGQSDREVLLELKNFLQFQNPINHGGYNSWPESGTSPCHWQGVGCDASGRVNFLDLSNSNISGPAFQNLSRLSGLTHLDLSANSITGELHDDLKNCLHLQYLDLSYNLISGILDVSSLANLQTLDVSQNRFEGGISANFPAICRNLSAINLSSNNLTGSISGLFNNCLKLQDVDLSWNSFTGNVWNGIARLRQFKAGKNNFAGSISSRTFSTGCKLQLLDLSSNHFYGNFPSSIANCAGLTYLSIWDNHFNGSIPPGIGSIHGLEELVLTSNHFDREIPLELMNCTSLKYLEISDNNFGGEVQQVLGKLTSLTNLVLQENNYSGGIVSSGILGLPKLALLDLSFNNFNGKLPTEIASMGSIKALMLAENNFSGTIPPSYGQLVNLQALDLSYNSLSGEIPPSIGNLTSLLLLMLAGNQLSGEIPREIGNCTSLLWLNLVGNRLSGQIPPEMAGMGRNPSSTFAKNQKNPSLMKSVTSKCLAVYRWVPSSYPEFDYVQSMMFSHKNCRTIWNRLLMGYDILPASSPLRTALGYVQLSGNLLSGQIPSAIGAMKNISLLLLDGNRLSGHLPSEIGSLQLVSLNASNNSISGEIPFEIGNLGSIESLDLSCNNFSGSLPSSLEKLSKLSQFNVSYNPLLTGEVPSSGQLSTFSELSFLGDPLLSWRSAAGHPRPKNGTGFFFNGTEYPTKEDISVSVIAFLVFFSVTFVIRELQIIIFLYNIIMYKLTDHRTPLQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.104945 | 0.051422 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0400800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g28270 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0400800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0021060 | RBH | 0.313139 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0020900 | RBH | 0.119150 | 0.035115 | 0.072934 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0020960 | RBH | 0.356149 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0020950 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020790 | RBH | 1.452051 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0269200 | RBH | 2.0696815 | 0.291296 | 0.5328865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020530 | RBH | 0.169115 | 0.000000 | 0.028972 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0271000 | RBH | 0.295042 | 0.2473005 | 0.5116215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0022030 | SBH | 0.108463 | 0.146758 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020770 | RBH | 0.299384 | 3.693259 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0020870 | RBH | 2.990772 | 6.671483 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020760 | RBH | 0.424119 | 0.101027 | 0.097423 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0020640 | RBH | 0.266031 | 1.042752 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020570 | RBH | 0.113447 | 0.214526 | 0.171174 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0020470 | RBH | 0.0 | 0.0 | 0.0 |
