Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0020500 | OGI:03043050 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:16953767-16954569 | ||||||||
| Gene Symbol | TIFY11G, OsJAZ 15, OsJAZ15, OsTIFY11g | ||||||||||
| DNA seq | ctcagaaggctcacttttgcttcctcttttggaggaatcgctgcagcgacgccttcctggcgatcggcatcacgccgccggcggagacccccgaggcagccggcatctgcggcggcggcagcagcatgggcggctcgtccggcgggggagtcacaacggtgacattattgtttttgttcccaccgccgccgccggcggccgcagccagcagatgctgcgtgcgctgcaccagcttctcggccgcctccgccgtgtagtgctcgaacaccagcacctggccgccgtagacgatggtcaatggcgccgtcggcgccgtcgccggcaccgacggcgtcacatgcacttccggcctgcatgtacacgaccaagtaaattaagagagatgatcgtacattaggcgataccggaaattaagaggcctttaatttgcaatatatgttcaccgtcgtcgttcttgggccgccgccggcgccggagccggcgacacgacgacgccgtctgcggatcgcgtggggaagagctgcatggtccgggcgtcgacgaccatcttctccttggcctccgccgccgccgccgccggccagatcacggcgccgccggcggcggcctgctgctccggcgccgtcgtcatgcacggtggctgcggcggctggccgcgcctggcggcggcggggagcatggcgccaccgccagctgcgccgacggcgtccatctctcgcgtccggcctttctcctccttgaacgtactatacctagctagcttaccatctcttgtgttggcgaagctgcgtgggttccgggga
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| CDS seq | atggacgccgtcggcgcagctggcggtggcgccatgctccccgccgccgccaggcgcggccagccgccgcagccaccgtgcatgacgacggcgccggagcagcaggccgccgccggcggcgccgtgatctggccggcggcggcggcggcggaggccaaggagaagatggtcgtcgacgcccggaccatgcagctcttccccacgcgatccgcagacggcgtcgtcgtgtcgccggctccggcgccggcggcggcccaagaacgacgacggccggaagtgcatgtgacgccgtcggtgccggcgacggcgccgacggcgccattgaccatcgtctacggcggccaggtgctggtgttcgagcactacacggcggaggcggccgagaagctggtgcagcgcacgcagcatctgctggctgcggccgccggcggcggcggtgggaacaaaaacaataatgtcaccgttgtgactcccccgccggacgagccgcccatgctgctgccgccgccgcagatgccggctgcctcgggggtctccgccggcggcgtgatgccgatcgccaggaaggcgtcgctgcagcgattcctccaaaagaggaagcaaaagtga
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| Protein seq | MDAVGAAGGGAMLPAAARRGQPPQPPCMTTAPEQQAAAGGAVIWPAAAAAEAKEKMVVDARTMQLFPTRSADGVVVSPAPAPAAAQERRRPEVHVTPSVPATAPTAPLTIVYGGQVLVFEHYTAEAAEKLVQRTQHLLAAAAGGGGGNKNNNVTVVTPPPDEPPMLLPPPQMPAASGVSAGGVMPIARKASLQRFLQKRKQK |
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| Function | Protein TIFY 11g [UniProtKB/Swiss-Prot:Q94LG1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0020500 | OsLima_03g0020500.01 | Chr03 | 16953767 | 16954569 | - | NAM | ||
| CDS seq | atggacgccgtcggcgcagctggcggtggcgccatgctccccgccgccgccaggcgcggccagccgccgcagccaccgtgcatgacgacggcgccggagcagcaggccgccgccggcggcgccgtgatctggccggcggcggcggcggcggaggccaaggagaagatggtcgtcgacgcccggaccatgcagctcttccccacgcgatccgcagacggcgtcgtcgtgtcgccggctccggcgccggcggcggcccaagaacgacgacggccggaagtgcatgtgacgccgtcggtgccggcgacggcgccgacggcgccattgaccatcgtctacggcggccaggtgctggtgttcgagcactacacggcggaggcggccgagaagctggtgcagcgcacgcagcatctgctggctgcggccgccggcggcggcggtgggaacaaaaacaataatgtcaccgttgtgactcccccgccggacgagccgcccatgctgctgccgccgccgcagatgccggctgcctcgggggtctccgccggcggcgtgatgccgatcgccaggaaggcgtcgctgcagcgattcctccaaaagaggaagcaaaagtga
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| Protein seq | MDAVGAAGGGAMLPAAARRGQPPQPPCMTTAPEQQAAAGGAVIWPAAAAAEAKEKMVVDARTMQLFPTRSADGVVVSPAPAPAAAQERRRPEVHVTPSVPATAPTAPLTIVYGGQVLVFEHYTAEAAEKLVQRTQHLLAAAAGGGGGNKNNNVTVVTPPPDEPPMLLPPPQMPAASGVSAGGVMPIARKASLQRFLQKRKQK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0396500 | RBH | 0.0 | 0.0 | 3.313136 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g27900 | RBH | 0.0 | 0.0 | 0.578575 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0396500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0020800 | RBH | 0.0 | 0.0 | 0.938178 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0020660 | RBH | 0.0 | 0.0 | 4.755677 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0020690 | RBH | 0.0 | 0.0 | 5.438948 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0020690 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020520 | RBH | 0.0 | 0.0 | 13.853394 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0264300 | RBH | 0.026482 | 0.0046155 | 0.010074 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020280 | RBH | 0.0 | 0.0 | 1.672800 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0266900 | RBH | 0 | 0.018826 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0022960 | SBH | 0.948908 | 1.481603 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020520 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0020610 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020510 | RBH | 0.0 | 0.0 | 1.053207 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0020370 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020360 | SBH | 0.0 | 0.0 | 1.747444 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0020200 | RBH | 0.000000 | 0.0 | 6.598263 |
