Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0022960 | OGI:07070380 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:26366269-26370096 | ||||||||
| Gene Symbol | TIFY10B, OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7 | ||||||||||
| DNA seq | agaaaccgcagcggctgcgtcgtctccgtctcctctccttgcttataaacgctcgcgcacgagcctctctctctctctagctctcgctctcgcagctcaaccactagcagcagcggcaggaaggcgagaggaggaatcggaggtagctggacggcggcgaggcgacgacgagccggggtggtgcagcaagaacggcgcggcgagcggcggggaggagagattggatcgacgccgggtagttaggaagggagcttggagagatggcggcttccgcgaggcccgtcggcgtcggcggggagagggcgacgagcttcgccatggcgtgcagcctgctcagccgctacgtccgccagaacggcgccgccgccgccgagctcggcctcggcatcagaggtgaggaggagaaggaaaaaaaaaaaaagaactcatccctttttttgtgggtgtgcttcggcttggttggatcttcatcttcagcttcggtttcgtgttgagatctgatcacaaggtttggggttttggttcggttccaggtgagggtgaggctccgagggcggcgccggggacgatgagcttgctgcccggggaggcggagaggaagaaggagaccatggagctcttcccgcagagcgccggctttggccagcaggatgccatcaccgccgattctgctgctgatgctaggtatggggccatgccacttggttctctgcttcatttttgtgcagttcctgctccttaggtgtatgtgtgtgtgtgtgtcctagttcttggaatcacgcagagaaatgacaaattttgcagtctacaaaacttagctgtaagtgcctcaataggttgaagccactgtttttggtatcaaatctagttgaggggagagagggttatgagtaaacattttgttgttttttgctttgggttcagatactaattggaattaggcaagcagagttactaggtcattcagacttcagggagttgttaatggatctataaaaactttacctatctttgttaatagaaaattttaaccccaaacttagggtttttttttgtttaaactggggcactgaaaacgtaggttcaaaaagaaccctttttatgcttgccggtgaaaatagagttagtcagatggtgcagaattggaggggtgatatactggtatcccaggtgttcatagtgttctctgtgcaaatgaatttcagggaacaagagcctgagaagcgtcagctgaccatcttctatggtgggaaggtgctcgtgttcaacgacttcccagccgacaaggcaaagggattgatgcagctggctagcaagggcagcacggtggctcctcagaatgccgtggcacctgcaccagcagctgttacagacaacaccaaggcccctatggccgtgccggccccggtcagtagcttgcctacagctcaggccgatgctcagaagcctgctcgcgcgaatgcttctggtaattactctgccctttcttgatgttcatgtctgtcggggtattgaacgcataaccagttgaattttgttgtagcagttatcaattgacctctttttttctgtgtagatatgcctattgctaggaaggcatcactccacaggttccttgagaagagaaaggatcggtaagttgttttgctgtgatgatttgcatgatgtttaagttcagtattttgatcactgcagttcatggatctaatatgcgccttttgttgtcacagtcttaatgcaaagacgccataccaggcttctccttcagatgcaaccccagtcaagaaggagcctgagagccagccatggctcggactagggccgaacgccgtcgtgaagcccatagaacgcggccaatgaggttgcatggaaacttcaccaaagctcttcaaaaatatatgaaatgcgcttgccgttagagtaccaaatcatatatgttctctcataccccatgttttagtgttttttctttagttcgtgcttctatgttgttcacttgtcacatagttctgaatgtaaaggaaaaaggtagtagcattgacgaccagtgccgagagcctgagagaagttttggcatgttaacacatggtgactctgaaaatggccatgctaaggtaaaaagttattgcaaaggaaacatatatgtatcttctgaaattctgatcatctggctttgtccttggctctagccttgctctatgcaaagcaaagtgattgtaatggattcagaatataattcatattcctattgttgatttctgttacatggcttattggcttggtcctcctccaatatgtctgcattatttggtccccattatatgtgcctgcagagtcaatttgctcttggactttcttttttccttttcttgacgcgttttcattttttcttaaatgcaaacctcattatttagcataaaataataactacatacacaaactacaaactaatggaatatttgatgttccacaaacacaattattagtgattgcctatgaatcttttctgttttgtagctatatattttatcatcatgcaaaggggatacagggcagcacaggaggcagcctggggtaggttggatggcactgtcaagctgaagataagggttttgcgaaggaaggtgcacaaggcaagacttgtcaccccatgcccaattctttaatcaaaagatatgagcacatgtgagaaattgggggtggagatgagttgataggattcttgtttgacagctaaagcaaagcaaagcatgaagagcaaaacaacaggaagctgtttggaaattgcaagggggggggggggggggaaagaaggatgcattgaccgggattctctgcagtactgccgatatgataatagcaacttacatgtgggatcggatccacctgtcagtgattgctactgaaccaattgtactgcggaggatccatgtccagtatgcatacatgatacggagtacatacatacaaaagacatttttcagagagagatgtttgttggacgcatgggagcccacagtgagccaagttgcctgcttttttctcctttctcaacttgtttgtataatactcctaacaaaaggacttgatgaactagtgctcacattcctgcaacttgctgtctaccaattgtcaaatcttttgattagttttttctcttacagaagattttgcatgccattctcgatcattcctttgtgacacaattttgtcagagagcttgtgtaactctctctctttactcttcactgaatcaatttcaaattcaggaatccagccaatctggtcagactacttctgttccacgaaccgataaaattaacacatcttggcagctttacaatacctttttttttcttgcaggcttctgccttgtaatttactcattgatttgcccggttgatgcatgcacgtactaccaatcgtcctttgtgtgtttgaagaattatcaaaagagaaagataacaacaaaaaggcacaccatgtgctcaagctgttcatggttacaactaacaaaatccgtgtgccgtcctctgtggtccaggagacatgctacccttgtttccaggatgcaattgcttgtttaatccgaggcactaatgatgggtttattgggtccagtaatccattatccatccaggtcaaaattcagagcgttcttcagaccacacggccacatggggggcatgaagtggactgcaaatggcagcatggaccatttgaatcgagctagctgttcatcatctgatggatgaaccaacgacctaccgatgattcagtagctaccaaacagtgggaaaaacgaattggctgtgtgacttgcaacag
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| CDS seq | atggcggcttccgcgaggcccgtcggcgtcggcggggagagggcgacgagcttcgccatggcgtgcagcctgctcagccgctacgtccgccagaacggcgccgccgccgccgagctcggcctcggcatcagaggtgagggtgaggctccgagggcggcgccggggacgatgagcttgctgcccggggaggcggagaggaagaaggagaccatggagctcttcccgcagagcgccggctttggccagcaggatgccatcaccgccgattctgctgctgatgctagggaacaagagcctgagaagcgtcagctgaccatcttctatggtgggaaggtgctcgtgttcaacgacttcccagccgacaaggcaaagggattgatgcagctggctagcaagggcagcacggtggctcctcagaatgccgtggcacctgcaccagcagctgttacagacaacaccaaggcccctatggccgtgccggccccggtcagtagcttgcctacagctcaggccgatgctcagaagcctgctcgcgcgaatgcttctgatatgcctattgctaggaaggcatcactccacaggttccttgagaagagaaaggatcgtcttaatgcaaagacgccataccaggcttctccttcagatgcaaccccagtcaagaaggagcctgagagccagccatggctcggactagggccgaacgccgtcgtgaagcccatagaacgcggccaatga
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| Protein seq | MAASARPVGVGGERATSFAMACSLLSRYVRQNGAAAAELGLGIRGEGEAPRAAPGTMSLLPGEAERKKETMELFPQSAGFGQQDAITADSAADAREQEPEKRQLTIFYGGKVLVFNDFPADKAKGLMQLASKGSTVAPQNAVAPAPAAVTDNTKAPMAVPAPVSSLPTAQADAQKPARANASDMPIARKASLHRFLEKRKDRLNAKTPYQASPSDATPVKKEPESQPWLGLGPNAVVKPIERGQ |
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| Function | Protein TIFY 10b [UniProtKB/Swiss-Prot:A2YNP2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0022960 | OsLima_07g0022960.02 | Chr07 | 26366269 | 26368540 | + | NAM | ||
| CDS seq | atggcggcttccgcgaggcccgtcggcgtcggcggggagagggcgacgagcttcgccatggcgtgcagcctgctcagccgctacgtccgccagaacggcgccgccgccgccgagctcggcctcggcatcagaggtgagggtgaggctccgagggcggcgccggggacgatgagcttgctgcccggggaggcggagaggaagaaggagaccatggagctcttcccgcagagcgccggctttggccagcaggatgccatcaccgccgattctgctgctgatgctagggaacaagagcctgagaagcgtcagctgaccatcttctatggtgggaaggtgctcgtgttcaacgacttcccagccgacaaggcaaagggattgatgcagctggctagcaagggcagcacggtggctcctcagaatgccgtggcacctgcaccagcagctgttacagacaacaccaaggcccctatggccgtgccggccccggtcagtagcttgcctacagctcaggccgatgctcagaagcctgctcgcgcgaatgcttctgatatgcctattgctaggaaggcatcactccacaggttccttgagaagagaaaggatcgtcttaatgcaaagacgccataccaggcttctccttcagatgcaaccccagtcaagaaggagcctgagagccagccatggctcggactagggccgaacgccgtcgtgaagcccatagaacgcggccaatga
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| Protein seq | MAASARPVGVGGERATSFAMACSLLSRYVRQNGAAAAELGLGIRGEGEAPRAAPGTMSLLPGEAERKKETMELFPQSAGFGQQDAITADSAADAREQEPEKRQLTIFYGGKVLVFNDFPADKAKGLMQLASKGSTVAPQNAVAPAPAAVTDNTKAPMAVPAPVSSLPTAQADAQKPARANASDMPIARKASLHRFLEKRKDRLNAKTPYQASPSDATPVKKEPESQPWLGLGPNAVVKPIERGQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0022960 | OsLima_07g0022960.01 | Chr07 | 26366269 | 26370096 | + | NAM | ||
| CDS seq | atggcggcttccgcgaggcccgtcggcgtcggcggggagagggcgacgagcttcgccatggcgtgcagcctgctcagccgctacgtccgccagaacggcgccgccgccgccgagctcggcctcggcatcagaggtgagggtgaggctccgagggcggcgccggggacgatgagcttgctgcccggggaggcggagaggaagaaggagaccatggagctcttcccgcagagcgccggctttggccagcaggatgccatcaccgccgattctgctgctgatgctagggaacaagagcctgagaagcgtcagctgaccatcttctatggtgggaaggtgctcgtgttcaacgacttcccagccgacaaggcaaagggattgatgcagctggctagcaagggcagcacggtggctcctcagaatgccgtggcacctgcaccagcagctgttacagacaacaccaaggcccctatggccgtgccggccccggtcagtagcttgcctacagctcaggccgatgctcagaagcctgctcgcgcgaatgcttctgatatgcctattgctaggaaggcatcactccacaggttccttgagaagagaaaggatcgtcttaatgcaaagacgccataccaggcttctccttcagatgcaaccccagtcaagaaggagcctgagagccagccatggctcggactagggccgaacgccgtcgtgaagcccatagaacgcggccaatga
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| Protein seq | MAASARPVGVGGERATSFAMACSLLSRYVRQNGAAAAELGLGIRGEGEAPRAAPGTMSLLPGEAERKKETMELFPQSAGFGQQDAITADSAADAREQEPEKRQLTIFYGGKVLVFNDFPADKAKGLMQLASKGSTVAPQNAVAPAPAAVTDNTKAPMAVPAPVSSLPTAQADAQKPARANASDMPIARKASLHRFLEKRKDRLNAKTPYQASPSDATPVKKEPESQPWLGLGPNAVVKPIERGQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0022960 | OsLima_07g0022960.03 | Chr07 | 26366342 | 26366669 | + | IsoSeq | ||
| CDS seq | tctctagctctcgctctcgcagctcaaccactagcagcagcggcaggaaggcgagaggaggaatcggaggtagctggacggcggcgaggcgacgacgagccggggtggtgcagcaagaacggcgcggcgagcggcggggaggagagattggatcgacgccgggtagttaggaagggagcttggagagatggcggcttccgcgaggcccgtcggcgtcggcggggagagggcgacgagcttcgccatggcgtgcagcctgctcagccgctacgtccgccagaacggcgccgccgccgccgagctcggcctcggcatcag
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| Protein seq | SLALALAAQPLAAAAGRREEESEVAGRRRGDDEPGWCSKNGAASGGEERLDRRRVVRKGAWRDGGFREARRRRRGEGDELRHGVQPAQPLRPPERRRRRRARPRHQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.948908 | 1.481603 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0615200 | RBH | 11.180837 | 13.499648 | 47.420452 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g42370 | RBH | 7.205739 | 9.040760 | 11.807775 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0615200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023230 | RBH | 0.851830 | 83.750145 | 55.936890 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023290 | RBH | 1.940408 | 18.189976 | 35.045589 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023130 | RBH | 3.804419 | 84.074417 | 78.052513 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023090 | RBH | 0.270759 | 2.062047 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023160 | RBH | 9.471007 | 117.069550 | 130.669891 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0415400 | RBH | 45.9105205 | 166.1422425 | 91.9061505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0023650 | RBH | 0.261129 | 6.263811 | 11.231287 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0425700 | RBH | 69.5980415 | 200.9960325 | 28.7771825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0020880 | RBH | 0.737993 | 0.673162 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023100 | RBH | 0.505025 | 84.521805 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0022980 | RBH | 5.986115 | 122.907532 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023190 | RBH | 2.416236 | 8.000949 | 16.550806 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0022960 | RBH | 1.061191 | 51.868622 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022910 | RBH | 0.274257 | 18.852304 | 22.142450 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0022930 | RBH | 0.804726 | 148.298920 | 93.425705 |
