Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0019560 | OGI:03040810 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:15900461-15905375 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcgagcgaaggatctgaatgagatgctcctggtggccgaagcggaggcggcgccgccggcgaacccgcgggggttcgtgaacctgctgtgcaagcagctcgaccacctcggcaacgctaggttcgacctggcattgttccgcgtcgacgcctacggcaacgtgctctacctccatgccgactctgcctcgtctctcgcgtgggacatcgaccactggttccatgtgcccgtaagaaacacataaattgaacgaactcatcccaagatccgcttcgagatcattcattcgtagatagggctgagggcaattttgtctttttaaaatttctctcccatcctttttatcataaatgataaaatattgtctcgagtgtcctacgtacagcaaattacatgaattttgtggtgtttatcagcaacgacacgattttacagtgtctcacagccaattacataatttttgggtgccccagggcaaattttgccatagtaatgttgctagttctgtcaccagcccactattactacaattttcacaattttcaaattagcacctgatattttctgatattatataatagtctaatatttttttaaatcaaatgaatcacacacacagatatatatatgTAtatatatatatatatatatatatattcaaataattagtatgaacattttacagtaacaaagcaggggtactttgttcgtataactataatggaattataattactatagttacatcatatatatatatatatagttacatactccctcggttcaaaagtctttagcacattttattttttgtttttctaaatgagatggtcatatttgttgtttccatgtactaaattaaatttttgatcgaaatctaatcaatcatcttaatactgcatgtatacatatagtttcttggttttgttatgtagagatgagttaatttttctgggtcttaatgtcaaaaactagcttagattttttgggggagtacaatgcaatcgcgttgtaataattataatgcaactaaattacaaataagcatgctgaaaatgagtaaacaacaagtaatgtgcacgttaatgaaccaccaaggttgattaatactccctctgttctaaaatatagtaattttttttgttagatgagatgtattgtagtactatgaatctggacatgctaaacaaaagttgctatattttgggacggatgaagtaataatcatcactacattcattctctattatagtagtggaaaacgtcgactcatttttacttaaaaatgcattgacatatgatctacatactctcaaagctttaaccttttggaaacttttcttcaagtctattatttattcgttctttctgctatctacccaaattattattctatttttttttcttttataatcctatatctttgcacttgtaaaccatcaaaaccatgtgtagatatacgtcctaattaataaggcagttaatcctcgcaattctgctatgcatctcaaattaaggcaagtacgctcacagatttttaaagtcggctaacaattcaacatacgcttcaaacttgtccatgaattatttgcgccgctcaagtggcgtgcaaaacatatgcatgcatatgctttatccaccacccgcttgatagacccaaacgctgagaagcaccgacgaacagaaaattagagtcaaaatcacgtcgaaatcgatcactttgtcccgcgggcgccgtcgtcttggcagtatatgcaccctattgattaactagtaatttatgtgtagatcgaggacggacatgttcttaattaagatcgagcttaaaatagttttacaaacaagaggtgaaccgtatacatttcgaaacttttttttttgtgcaagggtatatatttttggggtgattttttttttgcgagggtttaattttggggtgattatttgctgttcttgatataggcttagtagtagctatagtggtggattttctacaattctcgtacggtgtccctccaattaattaagtgacttccaaataaaggcaacgaggttcaagtggtaggtacaagtagtgaggaactagttgaacaatcgctgagggatcactaattaatattatgatagtggtgtcaaaagagacatggcaagttgtgccccatatatatatatatctttctttgcaataacttctatcatcgagcatttgcccaaccaaaagataatgataggaaataatcgaagtttgacattttagaccaaggttggctaggggtttttagcggcaaaattaaattaaattaaattaagacccgtttcaccttttttgcgttaaattaaattaatgatgacacgcatccacccttttaacatgcttaattaacgtagcaataggatagcattcgtttcattgcagttgggcaactgttggttgatcatcactacactgccgatcagtaattaacagccaaactatagcatgcacagtactaattgacattccagatcacttaattagctaggttggaggatcatctaatatttgttttgacttctaccttaaatgagatgtcggccactttttcatgcaccctaagagcaagtttaataggtcctagtcagcaggcggtaacatattccacaccatcaaaatcccaggtggaggagtgagaagagacgaaaaagggcggagcgggcagtccatctatcgcccggctaaagcacaccgtacgagaaaaaaaggccttcttgcagcccgatgagagcgtatctgccggcgcttcgttcctcctcctgatcccgtgcgtctctctgccccttcgccgttcctcctccccgatgccagattccttcatccgcgcgccaaatcggcctcgcctcccgccaaatcgatgtataaatcctcaatccactccaaagcaaccgagttttcccccaaattgtctcctcccaaaccctagatgccaaattcatcaccaacctgcagcaagatggggcggcagtctaaaagggcgtgtgcgccgacgcctatggaggtcccgtcgccggggaatcagcccgtcgcgccgccagggaatcagcctgtcacgtagccgctgccacctcagttcgtcgtcccatcctcgtttgcttccacctacagacccggtgcattgttccctgtagtaacaacgcagtccatggtgccctcgtccgcaccatgttggttcaccatgttgcagcaaccaggcatgactggttcgtcgactcaaggaccttggttgttctctactggaattggtccatctacggagaatgctgagcaccctgatatccatgcattgtatgatactgtccctctcttctcaaaatttttggttgtttaatttttcttattctgtatgcatgatttttctgcataatcgattgatatgccctattgatctgttcaaggcttcatctggatgcatgccaatgtactgaatagttcacattatgtgattcacgttagtaaaaaaaaaacattctgtgattcacattgggggagggtatatggatcagattagctcctaaattgcattaaatttatcacgcaaaacaattcttgatgtgggttgtatagattgcaagtttctgctttgactcttctctacttatagttcaggatttcttagcaagcaaccattgatttgttagcctaaggtgttataataaattttcagtaaactgctatatagtatcttccatggagatatatatgctttaatttacagccacactagtccagtgactatcgcttcctgaatagggcgcttctagatgtatatatgtttgagatatatgattctgatttttgtgtatacatgtctgagcaggggagtggattctcacccacctggtggtttacttaaatttttgaggaaaaccacaccaagaactgaacaacatgtgtgcaatgggagttcattgcagccaatcaacgttggcgacgactgcaatgttggcgattgtgttaggactgaaaagcgcttgccgtggacaaaagaggaggatcttagattggtaagttattttttggggggttaattatgatgtccatgtgttacattaatagaactgcaataaacatcttttgataaatattttaggtcagtgcttggttgaataattcaaatgatccaatccaatcaaattacaagaagaatgaccaatattggaatggtgttgctaccgtctacaacatcaccaccccaaaaaacagggctaggcaggtcaagcaagtcaaggatcggtttggaagaattaaaaaaagggttgcatggttttgtgctagctggaaggaggctaatgctttgtgggctagtggtgaatctgaagtgaatttgatggacagggcagtgaaaagttatgaagaagatcacaaaaaggatggtccatttatgtttaagcattgttgggatgtgcttagcaaggaaccaaaatggaacgcctatttggaacgtctagaagatttggagccagacaagaggaagttcaatgttgaggagggtgtggggcatcatttctctctagatgatgctagagatgaacgaccaatagggggcaagcaagctaaggagcaacagaaacgaaaaagaaaggaccaggctattatagatcttgaagaggaattccacaagcttgtagatgctcagaatacagcaaatgagggccacaaagagatgctagagacacagaggcgtgtgtctagtgagaatgttgaagctcgaaagcttaagtatcttgcaaaaaaggaacacagggaatcaaccatgctagaaacatacaaatcgttgatgatgcaagatacaactgggatgcctgaagatgtgagatctgagcacatgctggcattgaggtgttttagggagaagttatttggcaaaactgactaa
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| CDS seq | atgcgagcgaaggatctgaatgagatgctcctggtggccgaagcggaggcggcgccgccggcgaacccgcgggggttcgtgaacctgctgtgcaagcagctcgaccacctcggcaacgctaggttcgacctggcattgttccgcgtcgacgcctacggcaacgtgctctacctccatgccgactctgcctcgtctctcgcgtgggacatcgaccactggttccatgtgccccaaccaggcatgactggttcgtcgactcaaggaccttggttgttctctactggaattggtccatctacggagaatgctgagcaccctgatatccatgcattggcagtgaaaagttatgaagaagatcacaaaaaggatggtccatttatgtttaagcattgttgggatgtgcttagcaaggaaccaaaatggaacgcctatttggaacgtctagaagatttggagccagacaagaggaagttcaatgttgaggagggtgtggggcatcatttctctctagatgatgctagagatgaacgaccaatagggggcaagcaagctaaggagcaacagaaacgaaaaagaaaggaccaggctattatagatcttgaagaggaattccacaagcttgtagatgctcagaatacagcaaatgagggccacaaagagatgctagagacacagaggcgtgtgtctagtgagaatgttgaagctcgaaagcttaagtatcttgcaaaaaaggaacacagggaatcaaccatgctagaaacatacaaatcgttgatgatgcaagatacaactgggatgcctgaagatgtgagatctgagcacatgctggcattgaggtgttttagggagaagttatttggcaaaactgactaa
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| Protein seq | MRAKDLNEMLLVAEAEAAPPANPRGFVNLLCKQLDHLGNARFDLALFRVDAYGNVLYLHADSASSLAWDIDHWFHVPQPGMTGSSTQGPWLFSTGIGPSTENAEHPDIHALAVKSYEEDHKKDGPFMFKHCWDVLSKEPKWNAYLERLEDLEPDKRKFNVEEGVGHHFSLDDARDERPIGGKQAKEQQKRKRKDQAIIDLEEEFHKLVDAQNTANEGHKEMLETQRRVSSENVEARKLKYLAKKEHRESTMLETYKSLMMQDTTGMPEDVRSEHMLALRCFREKLFGKTD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0019560 | OsLima_03g0019560.01 | Chr03 | 15900461 | 15905375 | + | NAM | ||
| CDS seq | atgcgagcgaaggatctgaatgagatgctcctggtggccgaagcggaggcggcgccgccggcgaacccgcgggggttcgtgaacctgctgtgcaagcagctcgaccacctcggcaacgctaggttcgacctggcattgttccgcgtcgacgcctacggcaacgtgctctacctccatgccgactctgcctcgtctctcgcgtgggacatcgaccactggttccatgtgccccaaccaggcatgactggttcgtcgactcaaggaccttggttgttctctactggaattggtccatctacggagaatgctgagcaccctgatatccatgcattggcagtgaaaagttatgaagaagatcacaaaaaggatggtccatttatgtttaagcattgttgggatgtgcttagcaaggaaccaaaatggaacgcctatttggaacgtctagaagatttggagccagacaagaggaagttcaatgttgaggagggtgtggggcatcatttctctctagatgatgctagagatgaacgaccaatagggggcaagcaagctaaggagcaacagaaacgaaaaagaaaggaccaggctattatagatcttgaagaggaattccacaagcttgtagatgctcagaatacagcaaatgagggccacaaagagatgctagagacacagaggcgtgtgtctagtgagaatgttgaagctcgaaagcttaagtatcttgcaaaaaaggaacacagggaatcaaccatgctagaaacatacaaatcgttgatgatgcaagatacaactgggatgcctgaagatgtgagatctgagcacatgctggcattgaggtgttttagggagaagttatttggcaaaactgactaa
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| Protein seq | MRAKDLNEMLLVAEAEAAPPANPRGFVNLLCKQLDHLGNARFDLALFRVDAYGNVLYLHADSASSLAWDIDHWFHVPQPGMTGSSTQGPWLFSTGIGPSTENAEHPDIHALAVKSYEEDHKKDGPFMFKHCWDVLSKEPKWNAYLERLEDLEPDKRKFNVEEGVGHHFSLDDARDERPIGGKQAKEQQKRKRKDQAIIDLEEEFHKLVDAQNTANEGHKEMLETQRRVSSENVEARKLKYLAKKEHRESTMLETYKSLMMQDTTGMPEDVRSEHMLALRCFREKLFGKTD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0873000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0873000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0019870 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0041550 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0019760 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0041360 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0019530 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0252400 | RBH | 0.0250375 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0019390 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0252700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024520 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0019580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0019650 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0019510 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0019430 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G019480 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0019330 | RBH | 0.0 | 0.0 | 0.0 |
