Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0018970 | OGI:03039260 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:15358598-15362386 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | actcttgagctggtagtacagtatctactaataattggcagctaggttactgtagctgtcgtagattggctcaagctagctgcggccatggcgaccttgctgctgctggccgtggcggcggcggcggcggcgtgggtgtggtgggggcggtacgcgtggcgggcgcgggcggtggcgaggaggctggcggcgcagggggtgcggggcccgcggcgcggcgggttgctgcggggttgcaacgacgaggtgcggcggcggaaggcggaggcggaggcggacggcgtggccatggacgtcggcgaccacgactacctccgccgcgtcgtcccgcacttcgtcgcctggaaggagctgtacggtacgcacccccctcttggccctgtggcaacaagagcaagaagaaattaatcctgtgcttaattgaattaattctttggataattcatagaattttcgatctctatatctacagaatcaaatagtaataaagaaatactacttggtttccactgaaaattttccgcgtctcacaactgagaaacaacaatataaagaacagcaacaataaagcctcgatcttccgttgcctaacatgtcatatcgaatctaaccattacatcggattccagccactccggtcatcaccggcatcgacaattgaatgaatgatcaaactccatcacaagaaatttctggggttttttttttgttgttaaaagcacaaggacatgaagaataattatattgttttcatatagcctttttttaacgaaagatgttttcatgccttctttgctaggatcttgtctcaggcggtcaagcctcaagcccgggggatatattggacatagtagaaatgtaaatcatctattctttgggtatcaaagatgaatatactattaattaaaaagatgttgagcagtgcagagtggaaagttttatgccataatattatacctgtcgatagaaacagaacatatatatccctgttcttttcggatgaatggattaacgaacaatgtttcccaaactcctaaacaatatgtcttttaagacattttgtgtatatgactttcttagaatattttctaaatctatttttcaactttgtaatagttaatttatttgtttgcaccctcaaataattattacaaatcattcggctatttagcccttcaagccacacaagatcatatgacaagtgagagacacacaagatcatataacaagggagaacatgtaacaaaaatggggagagaaaaacctagcagaaatgaccatgcctagaagagaaaaaaatgccatagttaaataagtcaccaaatactccctgttcaatgcagaaaaatagcctattcaactatatatcttgtaaataaatttcagtgatttatatgaacctccaacctgtacttcttgactgtgggagtgagaatatgcaattctgaagccattccacttcagcaactatatatatactaactcttcaaattatatgttttcatttgaatggtgtgtaggaacgccatttctgtactggtttggccctcaaccccgaatctgcgtctccgattacaacttggttaagcaaatcctttcgaagaaatatggccatttcgtgaagaacgacgcacacccagctattctgtcaatgatcggcaaagggctggtgctggtggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggacaagctaaaggtaaatggtcattctaacctggctccaatttctagcaatggattcctagttccttcagaaaatctactcagattttgtttgggagaagcttcctattcctaattctaatcaaatttatttcactgttctgcatttaggtgatgacaaaaacaatggccagttgtgctgaatgcttgatccaggggtggttagatcatgcatcgaacagcaagagcatagaaatagaagtggaattcagcaaacagttccaagatttgacggcagatgttatatgccgtacagcatttgggagtaatagtgagaagggaaaagaagtgttccatgcacagaaacaactgcaggccattgccatagcaacaatactcaatctgcaattaccaggattcaagtaaatctatctattcatatttcaccagtacttttttttcttggtacaaccttactgctaacgaatggcttctttttgattgtaggtatctccctaccaaaaggaacagatgcaagtggaagctagaaaacaagttaaggaacacgctcatgcaaattatacagtccagaattacctcagaaggaaatggatacggcgatgatcttcttggcgtgatgctcaatgcttgcttctcaacagagcaaggagaaaaacgagatgagctgatcctgtgcgtggatgagatcatagatgaatgcaagacattcttctttgcagggcatgaaaccacatcgcatttgcttacatggacaatgttcttgctcagtgtgtatccagaatggcaggatcggctgagagaggaggtcctgagagagtgtagaaaggaaaatccaaatgcagacatgcttagcaaactgaaagaggtaagaatataccgtgcatggattgcgcaaattaaaacagaatttagttcttgaaagtatgttttggaggctacggtttgacaagcgtttctgttttctattgttgtggcatgtcagttgaattattcttagtatctcattgtggcaatttgtagctgtagctaacattgaagtttgatattgcagatgacaatggtgctacttgagacactgagactctatcccccagttattttcatgtttagaaaacctatcaccgatatgcaactgggaaggctccacttacctagaggcactgcgattgtgatacctattccaattctgcaccgagacaaggaggtttggggtgacgatgccgatgagttcaacccgctgagatttgcaaatggggtcacaagagcagcaaagatcccacatgctcatctgggattctcaataggaccaaggtcatgcatcggtcaaaactttgcaatgttagaagcaaagttggtgatggccatgatcctgcagaagttctcctttgctctttcgccaaagtatgtccacgcacctgcagatctgataacacttcagccaaagtttggtcttcccatactcctgaaggctctggatgcatgagataatagttttgtatgtagctactattagtatgatttataaaatatgtatattacggggttgctagagcttcgggcgttatagttcttatccaccagaaagtacaccataaaactagaagatatgctgaagaaaggctgcaatctacattgttcagtgtattctgcatgtccagtctcttattatctataaaacttgtcaaggatatgcccagattatgtgtagaagatataaaaccttcaaagtctaatctgaattttggatggaccacctgatagcttggtctagcagctaaagatagaaagcccagttactgcctgatttggagctctatatattggcctgtatgacaacagtggaaaagcaaaggttgcccactcaatagcatttatgcagtaagtccaaattgtcctttcagctttgggtgctccattgattgccacaagtcatatctaatattcaattcgtctgtatgtgaacaacatatttcttatgtgaaaatgaagtacaaccaatacatggtgtgtacatctcgagaaaaagagagatggatgacacctgtttgaatggattgc
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| CDS seq | atggcgaccttgctgctgctggccgtggcggcggcggcggcggcgtgggtgtggtgggggcggtacgcgtggcgggcgcgggcggtggcgaggaggctggcggcgcagggggtgcggggcccgcggcgcggcgggttgctgcggggttgcaacgacgaggtgcggcggcggaaggcggaggcggaggcggacggcgtggccatggacgtcggcgaccacgactacctccgccgcgtcgtcccgcacttcgtcgcctggaaggagctgtacggaacgccatttctgtactggtttggccctcaaccccgaatctgcgtctccgattacaacttggttaagcaaatcctttcgaagaaatatggccatttcgtgaagaacgacgcacacccagctattctgtcaatgatcggcaaagggctggtgctggtggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggacaagctaaaggtgatgacaaaaacaatggccagttgtgctgaatgcttgatccaggggtggttagatcatgcatcgaacagcaagagcatagaaatagaagtggaattcagcaaacagttccaagatttgacggcagatgttatatgccgtacagcatttgggagtaatagtgagaagggaaaagaagtgttccatgcacagaaacaactgcaggccattgccatagcaacaatactcaatctgcaattaccaggattcaagtatctccctaccaaaaggaacagatgcaagtggaagctagaaaacaagttaaggaacacgctcatgcaaattatacagtccagaattacctcagaaggaaatggatacggcgatgatcttcttggcgtgatgctcaatgcttgcttctcaacagagcaaggagaaaaacgagatgagctgatcctgtgcgtggatgagatcatagatgaatgcaagacattcttctttgcagggcatgaaaccacatcgcatttgcttacatggacaatgttcttgctcagtgtgtatccagaatggcaggatcggctgagagaggaggtcctgagagagtgtagaaaggaaaatccaaatgcagacatgcttagcaaactgaaagagatgacaatggtgctacttgagacactgagactctatcccccagttattttcatgtttagaaaacctatcaccgatatgcaactgggaaggctccacttacctagaggcactgcgattgtgatacctattccaattctgcaccgagacaaggaggtttggggtgacgatgccgatgagttcaacccgctgagatttgcaaatggggtcacaagagcagcaaagatcccacatgctcatctgggattctcaataggaccaaggtcatgcatcggtcaaaactttgcaatgttagaagcaaagttggtgatggccatgatcctgcagaagttctcctttgctctttcgccaaagtatgtccacgcacctgcagatctgataacacttcagccaaagtttggtcttcccatactcctgaaggctctggatgcatga
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| Protein seq | MATLLLLAVAAAAAAWVWWGRYAWRARAVARRLAAQGVRGPRRGGLLRGCNDEVRRRKAEAEADGVAMDVGDHDYLRRVVPHFVAWKELYGTPFLYWFGPQPRICVSDYNLVKQILSKKYGHFVKNDAHPAILSMIGKGLVLVEGADWVRHRRVLTPAFTMDKLKVMTKTMASCAECLIQGWLDHASNSKSIEIEVEFSKQFQDLTADVICRTAFGSNSEKGKEVFHAQKQLQAIAIATILNLQLPGFKYLPTKRNRCKWKLENKLRNTLMQIIQSRITSEGNGYGDDLLGVMLNACFSTEQGEKRDELILCVDEIIDECKTFFFAGHETTSHLLTWTMFLLSVYPEWQDRLREEVLRECRKENPNADMLSKLKEMTMVLLETLRLYPPVIFMFRKPITDMQLGRLHLPRGTAIVIPIPILHRDKEVWGDDADEFNPLRFANGVTRAAKIPHAHLGFSIGPRSCIGQNFAMLEAKLVMAMILQKFSFALSPKYVHAPADLITLQPKFGLPILLKALDA |
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| Function | Cytochrome P450 709B2 [UniProtKB/Swiss-Prot:F4IK45] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0018970 | OsLima_03g0018970.01 | Chr03 | 15358598 | 15362386 | + | NAM | ||
| CDS seq | atggcgaccttgctgctgctggccgtggcggcggcggcggcggcgtgggtgtggtgggggcggtacgcgtggcgggcgcgggcggtggcgaggaggctggcggcgcagggggtgcggggcccgcggcgcggcgggttgctgcggggttgcaacgacgaggtgcggcggcggaaggcggaggcggaggcggacggcgtggccatggacgtcggcgaccacgactacctccgccgcgtcgtcccgcacttcgtcgcctggaaggagctgtacggaacgccatttctgtactggtttggccctcaaccccgaatctgcgtctccgattacaacttggttaagcaaatcctttcgaagaaatatggccatttcgtgaagaacgacgcacacccagctattctgtcaatgatcggcaaagggctggtgctggtggaaggcgcagattgggtgcggcatcgtagggtgctcaccccagctttcaccatggacaagctaaaggtgatgacaaaaacaatggccagttgtgctgaatgcttgatccaggggtggttagatcatgcatcgaacagcaagagcatagaaatagaagtggaattcagcaaacagttccaagatttgacggcagatgttatatgccgtacagcatttgggagtaatagtgagaagggaaaagaagtgttccatgcacagaaacaactgcaggccattgccatagcaacaatactcaatctgcaattaccaggattcaagtatctccctaccaaaaggaacagatgcaagtggaagctagaaaacaagttaaggaacacgctcatgcaaattatacagtccagaattacctcagaaggaaatggatacggcgatgatcttcttggcgtgatgctcaatgcttgcttctcaacagagcaaggagaaaaacgagatgagctgatcctgtgcgtggatgagatcatagatgaatgcaagacattcttctttgcagggcatgaaaccacatcgcatttgcttacatggacaatgttcttgctcagtgtgtatccagaatggcaggatcggctgagagaggaggtcctgagagagtgtagaaaggaaaatccaaatgcagacatgcttagcaaactgaaagagatgacaatggtgctacttgagacactgagactctatcccccagttattttcatgtttagaaaacctatcaccgatatgcaactgggaaggctccacttacctagaggcactgcgattgtgatacctattccaattctgcaccgagacaaggaggtttggggtgacgatgccgatgagttcaacccgctgagatttgcaaatggggtcacaagagcagcaaagatcccacatgctcatctgggattctcaataggaccaaggtcatgcatcggtcaaaactttgcaatgttagaagcaaagttggtgatggccatgatcctgcagaagttctcctttgctctttcgccaaagtatgtccacgcacctgcagatctgataacacttcagccaaagtttggtcttcccatactcctgaaggctctggatgcatga
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| Protein seq | MATLLLLAVAAAAAAWVWWGRYAWRARAVARRLAAQGVRGPRRGGLLRGCNDEVRRRKAEAEADGVAMDVGDHDYLRRVVPHFVAWKELYGTPFLYWFGPQPRICVSDYNLVKQILSKKYGHFVKNDAHPAILSMIGKGLVLVEGADWVRHRRVLTPAFTMDKLKVMTKTMASCAECLIQGWLDHASNSKSIEIEVEFSKQFQDLTADVICRTAFGSNSEKGKEVFHAQKQLQAIAIATILNLQLPGFKYLPTKRNRCKWKLENKLRNTLMQIIQSRITSEGNGYGDDLLGVMLNACFSTEQGEKRDELILCVDEIIDECKTFFFAGHETTSHLLTWTMFLLSVYPEWQDRLREEVLRECRKENPNADMLSKLKEMTMVLLETLRLYPPVIFMFRKPITDMQLGRLHLPRGTAIVIPIPILHRDKEVWGDDADEFNPLRFANGVTRAAKIPHAHLGFSIGPRSCIGQNFAMLEAKLVMAMILQKFSFALSPKYVHAPADLITLQPKFGLPILLKALDA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.066479 | 0.160468 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0370900 | RBH | 0.564103 | 0.403807 | 2.618571 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g25480 | RBH | 0.515047 | 0.266892 | 0.535917 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0370900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0019270 | RBH | 0.338923 | 2.949570 | 2.478336 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0019100 | RBH | 0.668091 | 0.000000 | 1.834075 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0019120 | RBH | 0.315060 | 3.586901 | 4.190123 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0019180 | RBH | 0.097919 | 0.021954 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018990 | RBH | 2.315663 | 2.587558 | 5.856492 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0242700 | SBH | 0.6552455 | 2.1989915 | 3.292919 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018850 | RBH | 0.145006 | 0.060096 | 0.459624 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0242500 | SBH | 7.1215245 | 10.7293935 | 4.7387665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024360 | RBH | 0.072798 | 0.508891 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0019000 | RBH | 0.216803 | 1.127898 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0019060 | RBH | 5.012542 | 3.537233 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018920 | RBH | 0.701258 | 0.267752 | 1.040319 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018840 | RBH | 0.199645 | 1.501596 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018970 | RBH | 0.259002 | 0.000000 | 0.757071 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018810 | SBH | 1.793123 | 1.801151 | 2.458386 |
