Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0018610 | OGI:03038240 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:15100627-15103941 | ||||||||
| Gene Symbol | GELP49, OsGELP49, GELP50, OsGELP50, OsGELP50a, OsGELP50b | ||||||||||
| DNA seq | acacagcgctgattgtgaagcttaattgattccatttagcatcaacaagcaataatcaagctgtaggctaatccaacggccatggcctcttccttctcatcagcaatgattcctcttctgcctcttcttcttcttctcgtgtgtactcgcggagccgtcgctaatgctaacaaccagccgccgccgctcgctggcggcggcggcggcggcaaatactgctacacgcgcatgttcagcttcggcgactccatcaccgacaccggcaaccaggtgagcttcttccccaccgcacccgccgccaggccaccctacggcgagaccttcttcggccaccccaccggccgctacagcgacggcaggctcgtcgtcgacttcctaggtagagtaatagcacttcactccgtcgatcgccggcggcaatgcgcggcaacaaccttcgttctcacacgcatatcataatgcttatgtcgtgcaaatgcagcggaggcgctggggttgccgtacctgacggcgtacctccggggGAAgacggcggaggacttccggcggggggccaacttcgcggtgtccgccgcgacggcgctgaggctggacttcttcagggaaagggggctcgacctcaccatcattccgccatactcgctggacgtgcagctggagtggttcaagggtgtgctccactcgctcgcctctactgaccaaggtaaactaattcaagtaacggaatttgctaacctaattcattttacagaaatttagtgtagatttttatcgaatcatccactgttggatccgcaacaccattcgtccttcagttcacctccagctacagcgagatggcggtgacccgactagttagggtgatagggtcccagggtgggggagggaaaagaggaaggggttcaccggtcttagagggacagcggtgggaagcggtagcctggcagtgggcaacggaacaggcagatggtgggctgatgttagcagtggggcgaagtggatcgagcggttaggaaggcggcgactagtggagatggatatggtagaggggagccattggagatagggaagaagatggtagggtggaggcacctcttgacaggtggcttaagaggaggataggcgtgaagagggagaggtatggcaagcctcgccgacgccattgatgcctttcaagcgctggtgaggccaggagaggcgttgagaggagagttatggcaggtcttgccgacgcaattgatgtctttcaagcgccagtaaagctggggctggcggcgtaggaggaggtaGgggaatcgacagagccgatgttgaattattgggcgacggtgcactacacgggaattggagttcggaaagtgaaggtggagttagggttaagtgatgacgcatgaatctcagagcaaatccaacgattgacacattttgtataatttaggatagaaattttctgttacatattatactgtcagccccttaaagtaattagttagccacatttcaatggatagctatagctaaatatactgttactgattaaccattttgatttgttgtatttcttctcactacactacacctatgtgtatacacagagcgcaaggacattatgacaagatcgttattcctaatgggtgagataggcataaatgattacaaccatcacttcttccagaacagatcctttatagctgaaatcaaacccttagtgccactagtgatttcaaagattgaaaatgccaccaaggtactaactacattcataacaaaagtatacttaacaacgatttaccactaatgttttaccattttattatgcatggatgaacaggttttgatcgaccttggtgccaagaccatactggttccagggatcccgccaatgggctgcattccgaggtttctcaacttgctccctagcaagaaccacaatgactatgacaagcttggatgtctgaagtggctgaacgacttctctcactaccacaatcgtgctctcaaacaaatgttacaaaagattcatcatgattctaccgtcaccctgatctatgcagactactatggagcaatgttgaagatagttcgaagccctcagaacaatggttcgtgtttttttttCtattttacccaatccgttctaaaatatagcaatttacctactccctccatcacatattgatcattccccataagatttttgaggtcttctcaaattgattttcatctaagtggtgtctaaatatttattcgtctagaagtaaatgacatcgttgcatgtctattcgtttatctatgccgaataaatgacatcattgtatgtctactcatttatatgtgcagaagtaaataacatcattgcatacctcgcatacattcaattgcaagtttgcatgtccatatgcatatgaaatacaacaccttgatcgatgaggtttagtttaagaaggaaaaatgttgtgtggtcctaatcttggtgccatttgtaaatatgatgatcatcaaattgggaaggagggagtagtactgtattagacgtaacatagtattatgtttttcttattctactcccttcatctcaaaatataataatccatattactatagattagatataacctagtactttgaatctggagtaccatgtgtcgtgtctaattcaatattagattgctaatattttaggagggagggagtagtaaatgtaacttcaaaatgtttaggatgatatctgttgggtaaaatttcttttttttccttatcattcgatccttgtgtcttctttgacaggattttgattctgaattttttttttccttgtggctgtttaatttgcagggttcacgaaggagagcgttctgagggcgtgctgtggggtgggtggggcctacaacgccgactcgctggtgtgcaacggcaacgccacgacgtcgaacctgtgcatggagccgtccaggtacatctcctgggacggcctgcatctcaccgaggccgcctaccactacatcgcccgcggcgtgctgcatgggccgtacaccgagcctgccatacccaccagatgcacagcctgatcatacccacacattacaccttgtttatcccagatgtataaccagaaatacttgaatttaaaacggatgcaaaattagtaaattacctttatactccctttgctaagttgattgtttgaattttcactttgatttgtacaTttttttaaactactagacgatgttttgtaaaacaagtccttccgctactttgatttttgtaaaccaagtccttccgctactttgatttgtactccctccgttcttt
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| CDS seq | atggcctcttccttctcatcagcaatgattcctcttctgcctcttcttcttcttctcgtgtgtactcgcggagccgtcgctaatgctaacaaccagccgccgccgctcgctggcggcggcggcggcggcaaatactgctacacgcgcatgttcagcttcggcgactccatcaccgacaccggcaaccaggtgagcttcttccccaccgcacccgccgccaggccaccctacggcgagaccttcttcggccaccccaccggccgctacagcgacggcaggctcgtcgtcgacttcctagcggaggcgctggggttgccgtacctgacggcgtacctccggggGAAgacggcggaggacttccggcggggggccaacttcgcggtgtccgccgcgacggcgctgaggctggacttcttcagggaaagggggctcgacctcaccatcattccgccatactcgctggacgtgcagctggagtggttcaagggtgtgctccactcgctcgcctctactgaccaagagcgcaaggacattatgacaagatcgttattcctaatgggtgagataggcataaatgattacaaccatcacttcttccagaacagatcctttatagctgaaatcaaacccttagtgccactagtgatttcaaagattgaaaatgccaccaaggttttgatcgaccttggtgccaagaccatactggttccagggatcccgccaatgggctgcattccgaggtttctcaacttgctccctagcaagaaccacaatgactatgacaagcttggatgtctgaagtggctgaacgacttctctcactaccacaatcgtgctctcaaacaaatgttacaaaagattcatcatgattctaccgtcaccctgatctatgcagactactatggagcaatgttgaagatagttcgaagccctcagaacaatgggttcacgaaggagagcgttctgagggcgtgctgtggggtgggtggggcctacaacgccgactcgctggtgtgcaacggcaacgccacgacgtcgaacctgtgcatggagccgtccaggtacatctcctgggacggcctgcatctcaccgaggccgcctaccactacatcgcccgcggcgtgctgcatgggccgtacaccgagcctgccatacccaccagatgcacagcctga
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| Protein seq | MASSFSSAMIPLLPLLLLLVCTRGAVANANNQPPPLAGGGGGGKYCYTRMFSFGDSITDTGNQVSFFPTAPAARPPYGETFFGHPTGRYSDGRLVVDFLAEALGLPYLTAYLRGKTAEDFRRGANFAVSAATALRLDFFRERGLDLTIIPPYSLDVQLEWFKGVLHSLASTDQERKDIMTRSLFLMGEIGINDYNHHFFQNRSFIAEIKPLVPLVISKIENATKVLIDLGAKTILVPGIPPMGCIPRFLNLLPSKNHNDYDKLGCLKWLNDFSHYHNRALKQMLQKIHHDSTVTLIYADYYGAMLKIVRSPQNNGFTKESVLRACCGVGGAYNADSLVCNGNATTSNLCMEPSRYISWDGLHLTEAAYHYIARGVLHGPYTEPAIPTRCTA |
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| Function | GDSL esterase/lipase At1g31550 [UniProtKB/Swiss-Prot:Q9C857] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0018610 | OsLima_03g0018610.01 | Chr03 | 15100627 | 15103941 | + | NAM | ||
| CDS seq | atggcctcttccttctcatcagcaatgattcctcttctgcctcttcttcttcttctcgtgtgtactcgcggagccgtcgctaatgctaacaaccagccgccgccgctcgctggcggcggcggcggcggcaaatactgctacacgcgcatgttcagcttcggcgactccatcaccgacaccggcaaccaggtgagcttcttccccaccgcacccgccgccaggccaccctacggcgagaccttcttcggccaccccaccggccgctacagcgacggcaggctcgtcgtcgacttcctagcggaggcgctggggttgccgtacctgacggcgtacctccggggGAAgacggcggaggacttccggcggggggccaacttcgcggtgtccgccgcgacggcgctgaggctggacttcttcagggaaagggggctcgacctcaccatcattccgccatactcgctggacgtgcagctggagtggttcaagggtgtgctccactcgctcgcctctactgaccaagagcgcaaggacattatgacaagatcgttattcctaatgggtgagataggcataaatgattacaaccatcacttcttccagaacagatcctttatagctgaaatcaaacccttagtgccactagtgatttcaaagattgaaaatgccaccaaggttttgatcgaccttggtgccaagaccatactggttccagggatcccgccaatgggctgcattccgaggtttctcaacttgctccctagcaagaaccacaatgactatgacaagcttggatgtctgaagtggctgaacgacttctctcactaccacaatcgtgctctcaaacaaatgttacaaaagattcatcatgattctaccgtcaccctgatctatgcagactactatggagcaatgttgaagatagttcgaagccctcagaacaatgggttcacgaaggagagcgttctgagggcgtgctgtggggtgggtggggcctacaacgccgactcgctggtgtgcaacggcaacgccacgacgtcgaacctgtgcatggagccgtccaggtacatctcctgggacggcctgcatctcaccgaggccgcctaccactacatcgcccgcggcgtgctgcatgggccgtacaccgagcctgccatacccaccagatgcacagcctga
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| Protein seq | MASSFSSAMIPLLPLLLLLVCTRGAVANANNQPPPLAGGGGGGKYCYTRMFSFGDSITDTGNQVSFFPTAPAARPPYGETFFGHPTGRYSDGRLVVDFLAEALGLPYLTAYLRGKTAEDFRRGANFAVSAATALRLDFFRERGLDLTIIPPYSLDVQLEWFKGVLHSLASTDQERKDIMTRSLFLMGEIGINDYNHHFFQNRSFIAEIKPLVPLVISKIENATKVLIDLGAKTILVPGIPPMGCIPRFLNLLPSKNHNDYDKLGCLKWLNDFSHYHNRALKQMLQKIHHDSTVTLIYADYYGAMLKIVRSPQNNGFTKESVLRACCGVGGAYNADSLVCNGNATTSNLCMEPSRYISWDGLHLTEAAYHYIARGVLHGPYTEPAIPTRCTA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0018610 | OsLima_03g0018610.02 | Chr03 | 15100627 | 15103930 | + | NAM | ||
| CDS seq | atggcctcttccttctcatcagcaatgattcctcttctgcctcttcttcttcttctcgtgtgtactcgcggagccgtcgctaatgctaacaaccagccgccgccgctcgctggcggcggcggcggcggcaaatactgctacacgcgcatgttcagcttcggcgactccatcaccgacaccggcaaccaggtgagcttcttccccaccgcacccgccgccaggccaccctacggcgagaccttcttcggccaccccaccggccgctacagcgacggcaggctcgtcgtcgacttcctagcggaggcgctggggttgccgtacctgacggcgtacctccggggGAAgacggcggaggacttccggcggggggccaacttcgcggtgtccgccgcgacggcgctgaggctggacttcttcagggaaagggggctcgacctcaccatcattccgccatactcgctggacgtgcagctggagtggttcaagggtgtgctccactcgctcgcctctactgaccaagagcgcaaggacattatgacaagatcgttattcctaatgggtgagataggcataaatgattacaaccatcacttcttccagaacagatcctttatagctgaaatcaaacccttagtgccactagtgatttcaaagattgaaaatgccaccaaggttttgatcgaccttggtgccaagaccatactggttccagggatcccgccaatgggctgcattccgaggtttctcaacttgctccctagcaagaaccacaatgactatgacaagcttggatgtctgaagtggctgaacgacttctctcactaccacaatcgtgctctcaaacaaatgttacaaaagattcatcatgattctaccgtcaccctgatctatgcagactactatggagcaatgttgaagatagttcgaagccctcagaacaatgggttcacgaaggagagcgttctgagggcgtgctgtggggtgggtggggcctacaacgccgactcgctggtgtgcaacggcaacgccacgacgtcgaacctgtgcatggagccgtccaggtacatctcctgggacggcctgcatctcaccgaggccgcctaccactacatcgcccgcggcgtgctgcatgggccgtacaccgagcctgccatacccaccagatgcacagcctga
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| Protein seq | MASSFSSAMIPLLPLLLLLVCTRGAVANANNQPPPLAGGGGGGKYCYTRMFSFGDSITDTGNQVSFFPTAPAARPPYGETFFGHPTGRYSDGRLVVDFLAEALGLPYLTAYLRGKTAEDFRRGANFAVSAATALRLDFFRERGLDLTIIPPYSLDVQLEWFKGVLHSLASTDQERKDIMTRSLFLMGEIGINDYNHHFFQNRSFIAEIKPLVPLVISKIENATKVLIDLGAKTILVPGIPPMGCIPRFLNLLPSKNHNDYDKLGCLKWLNDFSHYHNRALKQMLQKIHHDSTVTLIYADYYGAMLKIVRSPQNNGFTKESVLRACCGVGGAYNADSLVCNGNATTSNLCMEPSRYISWDGLHLTEAAYHYIARGVLHGPYTEPAIPTRCTA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.242810 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0365900 | RBH | 0.0 | 0.0 | 1.881395 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g25040 | RBH | 0.0 | 0.0 | 0.316922 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0365900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0018900 | RBH | 0.0 | 119.863190 | 0.818982 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0018730 | RBH | 0.0 | 20.466478 | 1.300484 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0018760 | RBH | 0.0 | 50.320057 | 2.083205 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0018810 | RBH | 0.0 | 1.533180 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018540 | RBH | 0.0 | 49.711449 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0236900 | RBH | 0 | 4.73883 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018390 | RBH | 0.0 | 1.284346 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0237500 | RBH | 0.0205165 | 5.1271325 | 0.0417685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024850 | RBH | 0.0 | 0.360713 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018640 | RBH | 0.0 | 4.102570 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018700 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018570 | RBH | 0.0 | 0.485368 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018480 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018510 | RBH | 0.0 | 1.811461 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018440 | RBH | 0.0 | 37.916264 | 1.208532 |
