Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0018600 | OGI:03038240 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:15096248-15099684 | ||||||||
| Gene Symbol | GELP49, OsGELP49 | ||||||||||
| DNA seq | acactacatagatagatatcgatatgatatgatggcttctttcaggcctttctccctctcgtcgccgatgacgacggtgatgctcctgctctttcttctcctctgcacgacgaattccgccaccgccgccgccgtcgagtctgctgcaggtggcgatcaccggctggcgcccggcaacaatggcggctgcggcggcttcaagcgcatgttcagcttcggcgactccatcaccgacgccggtaacctcgcgaccatcagccctcccgacgcctctttcaacaggctcccctacggcgagaccttcttcggccaccccaccggccgcttctgcgacggcaggCTcatcgtcgacttcctaggtaattgagcacgtcgtctcatcgccggcgatcgatggcaatgcatatactccctctgttttaggttacaagatgttttgattttgtcaaagtcaaactgctttatgtttgactaaatttatagactactatagtaatatttacactaccaaattagttttattaaattaagaattaaATatatttttataataaatttatcttgggtcaaaaatatatttttataataatggttaaacttgaaacagttttacttttgaccaaattaagttaaaacattttataaactaaaacgaagggggtatatagcagtgctcttcgttctcacacacgctagctcaccatgaatgcgtggatgcagcggaaGgtctggggctgccgttcttgacgccgttcctccgggcgaagacaccggaggacttccggcaGggggccaacttcgcggtggccggagcgacggcgctgagccaggacttcttcaagaagatggggctcgacctcaccatcataccgccattctcgctggacgtgcagctcgagtggttcaagagtgtgcttaattctcttggctctacagaccaaggtataatacttaagtacgagatatttgataattcgacgctttcttggtcgttaaactgttttaattaacacttttggggatgatatataagagtttgggaccattgagtaaataaaaatgggtcaggatgttaaataatagaagctcactacgtgaagtgccaaatcaacaaatctctcccataatacaaagccgatttacttatactagggcatgcccatgggatttacttatacaaaagtgtgacaagactaatttagtcacctaagtAaaaaatatgcgttaacattagttcccaacgatgtttagtaatctcatcgttaagtaaaaatctgagtttgaggataaggggattgagaagattagaaagatacgcaaaacgtggtgagccattagcgcatgattaattgggtattaattattttaaatatcaaaatagattaatatgattttttaaagcaactttcctatataatttttttccAaaaaaacacaccgttagtagtttagaaagcgtgcgagcggaaaacgaaacaaacaaactcacattttcctgctgccgaacgcagaaaagaagatgaacaatggttttatttgttcagatttttatggagcaatggttacctatagcattcttttgatcttttatgggatcggttttttctagctaggagccggtttttcttggaaggtcttttaacatgtgtgagtatagtgggtagtaccataaaagaaggacaactaggcttttacagtaatagagaaaataaacgaagaagatatttttcgctacagagacgactataatgcacggcatgaataaaatcaaaggaagcacaaatgagatgaaatatctttgtacttttttgaatttgagcaaagtttatatctacaaatgaaataacaacctaaactgataatagagaaacctcacttttactacttagagggttgctttgactcggtcctcacatAtcattaaaataatcatgaaaaaaattatttgaaataacaacggacatataccgcatatatgtaaataagtactcataagtttgatctactcgtgtagatatcgagaaaagtgagaccggccgtaaacagtgcatttcttattcatgatcatttttcttagctcttaTttttttttcaaggtgtagattatttgggtataaaactttctaagaatgcaccttacttgtttcattgttatcaaatggtttataaaaaatcagctgataactgtttggttggtgtttaagaggaagcatgtgaggtcacatggcattattagaaaagtccagcagcctacaacagtgtgttatatctagaattttatattctgctatacaacctcatatagaactcaatcttaattgtatttacactgtcttgtgtagaacgcaaagaaattatgtctaaatccctatttctaatgggtgaggttggaggcaatgactataatcaccccttcttccagaaccgatcatttaccaatgagatcaagccattggtgccaaaagttatagccaagattgaaaatgccatcaaggtgagttctttatttgtcacctaagtacatgtataaaactctaccaagtacaattttgtattatccaccattcccttccattatgtttacatttggtggtatttgagtgcatataggtcctgattgatctaggagccaagacgattgtggttcctggaaatttccctatagggtgtgttccaaggtatcttacgatgttccagagcaagtcaagtccgcaagactacgatgaattcggatgcataaagtggttgaatgacttctcggtgtatcacaaccgtgcactaaaacggatgttgcaccagatccaccatgattcaacagttagcatactctatggtgattactacaacaccgctttagaaatcacccatcaccctgctgcctatggtaagccctattagacatgggagtttccccatgcatggtatgaattgaactacagccaaattaacacacaataaaattaaattggattaaaatcatttgggttattgctataaaatattgcagggttcaagaaggagaccgccttggttgcttgctgtggggatggtgggccctacaactccaactcattattcggttgcggtggcccgtcaacaaatctttgcactaatccatcgacacacatctcgtgggatgggctgcatcttactgaagccgcttacaaattcgtggcccatcacatgttacatggcccatatgctcatcaaccatccatatctcccaaatgaatgaatgatctaagtgtacaataggcatttaaaaagaacatataatagtgccaacaactttaataaattatatggtgtatcgaaggtgtgtgtgcgtctacatatcttgcaatttaaaataatttttggtgtgtctacatgtctagttgtactgtgaaaaataatatataattttttgtcaaatatggtataagttttgttctcat
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| CDS seq | atgacgacggtgatgctcctgctctttcttctcctctgcacgacgaattccgccaccgccgccgccgtcgagtctgctgcaggtggcgatcaccggctggcgcccggcaacaatggcggctgcggcggcttcaagcgcatgttcagcttcggcgactccatcaccgacgccgaacgcaaagaaattatgtctaaatccctatttctaatgggtgaggttggaggcaatgactataatcaccccttcttccagaaccgatcatttaccaatgagatcaagccattggtgccaaaagttatagccaagattgaaaatgccatcaaggtcctgattgatctaggagccaagacgattgtggttcctggaaatttccctatagggtgtgttccaaggtatcttacgatgttccagagcaagtcaagtccgcaagactacgatgaattcggatgcataaagtggttgaatgacttctcggtgtatcacaaccgtgcactaaaacggatgttgcaccagatccaccatgattcaacagttagcatactctatggtgattactacaacaccgctttagaaatcacccatcaccctgctgcctatgggttcaagaaggagaccgccttggttgcttgctgtggggatggtgggccctacaactccaactcattattcggttgcggtggcccgtcaacaaatctttgcactaatccatcgacacacatctcgtgggatgggctgcatcttactgaagccgcttacaaattcgtggcccatcacatgttacatggcccatatgctcatcaaccatccatatctcccaaatga
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| Protein seq | MTTVMLLLFLLLCTTNSATAAAVESAAGGDHRLAPGNNGGCGGFKRMFSFGDSITDAERKEIMSKSLFLMGEVGGNDYNHPFFQNRSFTNEIKPLVPKVIAKIENAIKVLIDLGAKTIVVPGNFPIGCVPRYLTMFQSKSSPQDYDEFGCIKWLNDFSVYHNRALKRMLHQIHHDSTVSILYGDYYNTALEITHHPAAYGFKKETALVACCGDGGPYNSNSLFGCGGPSTNLCTNPSTHISWDGLHLTEAAYKFVAHHMLHGPYAHQPSISPK |
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| Function | GDSL esterase/lipase At2g27360 [UniProtKB/Swiss-Prot:Q9ZQI3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0018600 | OsLima_03g0018600.01 | Chr03 | 15096315 | 15099684 | + | NAM | ||
| CDS seq | atgacgacggtgatgctcctgctctttcttctcctctgcacgacgaattccgccaccgccgccgccgtcgagtctgctgcaggtggcgatcaccggctggcgcccggcaacaatggcggctgcggcggcttcaagcgcatgttcagcttcggcgactccatcaccgacgccgaacgcaaagaaattatgtctaaatccctatttctaatgggtgaggttggaggcaatgactataatcaccccttcttccagaaccgatcatttaccaatgagatcaagccattggtgccaaaagttatagccaagattgaaaatgccatcaaggtcctgattgatctaggagccaagacgattgtggttcctggaaatttccctatagggtgtgttccaaggtatcttacgatgttccagagcaagtcaagtccgcaagactacgatgaattcggatgcataaagtggttgaatgacttctcggtgtatcacaaccgtgcactaaaacggatgttgcaccagatccaccatgattcaacagttagcatactctatggtgattactacaacaccgctttagaaatcacccatcaccctgctgcctatgggttcaagaaggagaccgccttggttgcttgctgtggggatggtgggccctacaactccaactcattattcggttgcggtggcccgtcaacaaatctttgcactaatccatcgacacacatctcgtgggatgggctgcatcttactgaagccgcttacaaattcgtggcccatcacatgttacatggcccatatgctcatcaaccatccatatctcccaaatga
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| Protein seq | MTTVMLLLFLLLCTTNSATAAAVESAAGGDHRLAPGNNGGCGGFKRMFSFGDSITDAERKEIMSKSLFLMGEVGGNDYNHPFFQNRSFTNEIKPLVPKVIAKIENAIKVLIDLGAKTIVVPGNFPIGCVPRYLTMFQSKSSPQDYDEFGCIKWLNDFSVYHNRALKRMLHQIHHDSTVSILYGDYYNTALEITHHPAAYGFKKETALVACCGDGGPYNSNSLFGCGGPSTNLCTNPSTHISWDGLHLTEAAYKFVAHHMLHGPYAHQPSISPK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0018600 | OsLima_03g0018600.02 | Chr03 | 15096248 | 15099658 | + | IsoSeq | ||
| CDS seq | atgggttcaagaaggagaccgccttggttgcttgctgtggggatggtgggccctacaactccaactcattattcggttgcggtggcccgtcaacaaatctttgcactaatccatcgacacacatctcgtgggatgggctgcatcttactgaagccgcttacaaattcgtggcccatcacatgttacatggcccatatgctcatcaaccatccatatctcccaaat
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| Protein seq | MGSRRRPPWLLAVGMVGPTTPTHYSVAVARQQIFALIHRHTSRGMGCILLKPLTNSWPITCYMAHMLINHPYLPN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.326236 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0365800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g25030 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0365800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0018900 | SBH | 0.0 | 119.863190 | 0.818982 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0018730 | SBH | 0.0 | 20.466478 | 1.300484 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0018760 | SBH | 0.0 | 50.320057 | 2.083205 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0018810 | SBH | 0.0 | 1.533180 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018540 | SBH | 0.0 | 49.711449 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0236800 | RBH | 0.0750765 | 1.196494 | 0.003822 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018380 | RBH | 0.0 | 6.774908 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0237400 | RBH | 0.0430695 | 0.072445 | 0.0104985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024850 | SBH | 0.0 | 0.360713 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018630 | RBH | 0.0 | 32.096863 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018690 | RBH | 0.0 | 39.978783 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018560 | RBH | 0.0 | 4.161234 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018470 | RBH | 0.0 | 8.818365 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018500 | RBH | 0.0 | 2.903440 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018430 | RBH | 0.0 | 89.777557 | 0.0 |
