Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0014250 | OGI:03028270 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:10894604-10894894 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtcttggcagttacagtcgaactccgcatttccaaaccagggcactgcaaataggaggctcatgctacaactatcagaatcattatctcccaaatttgatgcgagcatgactagagatgagtgtgaagatgaggaaccaggcattgttgtaacttcgaagtatgtgaatgaagctactgaggagtcaactgcagaaaaggatatgccttctgatggagatgatgctgagccaacgggtattactatcgagctggtgtgggacaacggcacgcccttcccggagccctga |
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| CDS seq | atgtcttggcagttacagtcgaactccgcatttccaaaccagggcactgcaaataggaggctcatgctacaactatcagaatcattatctcccaaatttgatgcgagcatgactagagatgagtgtgaagatgaggaaccaggcattgttgtaacttcgaagtatgtgaatgaagctactgaggagtcaactgcagaaaaggatatgccttctgatggagatgatgctgagccaacgggtattactatcgagctggtgtgggacaacggcacgcccttcccggagccctga |
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| Protein seq | MSWQLQSNSAFPNQGTANRRLMLQLSESLSPKFDASMTRDECEDEEPGIVVTSKYVNEATEESTAEKDMPSDGDDAEPTGITIELVWDNGTPFPEP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0014250 | OsLima_03g0014250.01 | Chr03 | 10894604 | 10894894 | + | NAM | ||
| CDS seq | atgtcttggcagttacagtcgaactccgcatttccaaaccagggcactgcaaataggaggctcatgctacaactatcagaatcattatctcccaaatttgatgcgagcatgactagagatgagtgtgaagatgaggaaccaggcattgttgtaacttcgaagtatgtgaatgaagctactgaggagtcaactgcagaaaaggatatgccttctgatggagatgatgctgagccaacgggtattactatcgagctggtgtgggacaacggcacgcccttcccggagccctga
More
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| Protein seq | MSWQLQSNSAFPNQGTANRRLMLQLSESLSPKFDASMTRDECEDEEPGIVVTSKYVNEATEESTAEKDMPSDGDDAEPTGITIELVWDNGTPFPEP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0157900 | SBH | 7.018815 | 6.475623 | 21.471310 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g18729 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0157900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003930 | SBH | 2.557803 | 40.496086 | 25.962582 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0014300 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003960 | SBH | 3.944211 | 25.697899 | 34.240246 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003950 | SBH | 0.865762 | 0.571393 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0014090 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0051300 | SBH | 28.144123 | 141.1586075 | 168.4644545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0014000 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0179300 | RBH | 0.5308385 | 0.656428 | 2.730591 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0003660 | RBH | 0.958534 | 0.887239 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0014230 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0014310 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0014140 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0014110 | RBH | 0.0 | 4.039360 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G014050 | RBH | 0.0 | 0.0 | 0.117094 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0013960 | RBH | 0.0 | 0.000000 | 1.348650 |
