Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0013300 | OGI:03026740 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:10240856-10243611 | ||||||||
| Gene Symbol | MSRMK2, OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3 | ||||||||||
| DNA seq | taatatcataatccaaagttccaaacccttttattcgaacatagtaccatatatcatacaaagcagccacaacttgcagagaatgtgggtttcgaacatcaacaaacaaacaaatgcaatgttcagtctacccggctctcaatcttgatcatatgtacaaagcaggtatagacgggatctcatttccatggtgattcaatctagtaccggaagtttgggttcatctcgatcgcttcgttgaagatcagctgcttcatttggtcctcgtttagagccttctgctcgaagtcgaaggagaagggctccaggcagatgggctcatcggcgatgtcgtgcaatctctctaggtaaggatgatcgagcgcctcctcaactgcatgtcaagaacgatgtcagtgagatatagttcttaagcacaaatcttctgtcatccttctaaaccactctgctattgtctagtgtttcaaaactaaggtctactgaactctaaccgacagaggctgcaaacgtgctacctattctacttctgcactactacacagtaaagtaacagagtcttttatcgtcacttgagcaacatgcaaaatcgttggtagccccaaagacagctaaaagacgggttccctttaaagtgacgagatcaagtgaccgactgttcacggcaagtaaacataaaaatagttggggatgggtcaaacaccggcggctatatacgccagtcaaagaagcagtgcgatagaaaatactagtactatactagcacacatgcagtagcatactgaacagggtactgtacatagtacacactcagctagtaaattagtacttgtaattttgggtactaattttagtagtttagaagcagagcagcaagcacgagttgggttagccctctgcacgcacctgtgattctctgcagcgggttgaaggtgagcatcctctcgatgaggtcgagcgcggcgggctgcacccgcgggaacatgctcgcgaacgtccggcgcgggtactgcggcaggtgcctcatgtacttcctcgcgtcctcgttccgtatgaaccccagctcgtcgtccgtcggcgtcccgatcacctgatcatggacccaacacgatgagacccaagaacaggtagcataattcagcgtgtgagtctctacgctgattaattcactcacctcggtgatgaggcgcatctggtgcatgtggtccctgccggggaagagcggctggcggttgatgagctccatgaagatgcagccgacggaccagacgtcgatggcggcggagtagtcggtggagttgagcagcagctccggcgcgcggtaccaccgggtgaccacgtactccgtcatcatgtcgctctccgacgacggccgcgccagcccgaagtcgcagatcttgaggtcgcagttggcgttcagcagcaggttgctcggcttcaggtcgcggtggatcacgttcgccgagtggatgtacttgagcccccgcaggatctggtacaggaaatactgcaacaacacggccgcaatcatacatatgtgatatgaggaagatcgaattgatgtttctgcagctatcgatcgattgtgtgattgatcgatatatgaaaaaaaaatcattcgctcacagttcactcacctggcagtgctcttctgacagttcttggttggagcggatgatgtgatggaggtcggtgtccatgagctccgtggcgatgtagacgtcgttgaacgcctgagggatcggcggcgggatcacatccctgatgcctatgatctgcgtgttgttgtagcagttagtgacagattaccaaattcaggtacacgccgctgcgtaattaaccacgtagtcttcagttccactactagttatagcctaataggagcttacgttctcgtggtcgaggtgcctgaggagcttgatctcccggagcgtgcgcttggcgtccatgtcgttgttgaacgcgttggcgatcttctttatcgccaccatctccctcgtctcaaagttcatcacggagctgtaggcaccagcacacggaattcagaagagaaattagaaaaacaaagcaccaaaaagtactccgaatagacatgccaaccagtcaaccactacgctgataataactaactaaaaacctgctcagctcagctgcagaatcaaattaatcatccctgctctaaaaacaGgggattagtaattggtcccaattactccatcctctcaaccactcatcgacgcgtatcaatcaatcaaaaggaactgacgaaggatcgattaacatggcaagaaatctagggcaggcagggaaaagaggaatcggcgtgtgcgtaccagacgatcccgtaggcgccgcggccaatgggcatgatgggcggctggtacttgttcgtcacctcgaacttgttcccgaagatgtcgtagagcaggtaccggccgccgtgcgtcatcgtcggcctgaactccgccaccggcgccccgtccatccctaatccctcctcttctctcgccgcaagcagccgaattgaccaacctaattaacgaccttatctgaCTctctctcgattcgcagagacagcaaggcgatgagggagaggatacgagaggcgaaggcagctattaaaaagggaagggggcggcggtttgtgaattggcacaatttgtgatcgctgctgctgctagtggctctctccccgatcgagcacggagtcctcggtccggatgaggaaggaaggtggcaagaaaggcagcgaagccccc
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| CDS seq | atggacggggcgccggtggcggagttcaggccgacgatgacgcacggcggccggtacctgctctacgacatcttcgggaacaagttcgaggtgacgaacaagtaccagccgcccatcatgcccattggccgcggcgcctacgggatcgtctgctccgtgatgaactttgagacgagggagatggtggcgataaagaagatcgccaacgcgttcaacaacgacatggacgccaagcgcacgctccgggagatcaagctcctcaggcacctcgaccacgagaacatcataggcatcagggatgtgatcccgccgccgatccctcaggcgttcaacgacgtctacatcgccacggagctcatggacaccgacctccatcacatcatccgctccaaccaagaactgtcagaagagcactgccagtatttcctgtaccagatcctgcgggggctcaagtacatccactcggcgaacgtgatccaccgcgacctgaagccgagcaacctgctgctgaacgccaactgcgacctcaagatctgcgacttcgggctggcgcggccgtcgtcggagagcgacatgatgacggagtacgtggtcacccggtggtaccgcgcgccggagctgctgctcaactccaccgactactccgccgccatcgacgtctggtccgtcggctgcatcttcatggagctcatcaaccgccagccgctcttccccggcagggaccacatgcaccagatgcgcctcatcaccgaggtgatcgggacgccgacggacgacgagctggggttcatacggaacgaggacgcgaggaagtacatgaggcacctgccgcagtacccgcgccggacgttcgcgagcatgttcccgcgggtgcagcccgccgcgctcgacctcatcgagaggatgctcaccttcaacccgctgcagagaatcacagttgaggaggcgctcgatcatccttacctagagagattgcacgacatcgccgatgagcccatctgcctggagcccttctccttcgacttcgagcagaaggctctaaacgaggaccaaatgaagcagctgatcttcaacgaagcgatcgagatgaacccaaacttccggtactag
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| Protein seq | MDGAPVAEFRPTMTHGGRYLLYDIFGNKFEVTNKYQPPIMPIGRGAYGIVCSVMNFETREMVAIKKIANAFNNDMDAKRTLREIKLLRHLDHENIIGIRDVIPPPIPQAFNDVYIATELMDTDLHHIIRSNQELSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPSSESDMMTEYVVTRWYRAPELLLNSTDYSAAIDVWSVGCIFMELINRQPLFPGRDHMHQMRLITEVIGTPTDDELGFIRNEDARKYMRHLPQYPRRTFASMFPRVQPAALDLIERMLTFNPLQRITVEEALDHPYLERLHDIADEPICLEPFSFDFEQKALNEDQMKQLIFNEAIEMNPNFRY |
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| Function | Mitogen-activated protein kinase 5 [UniProtKB/Swiss-Prot:Q10N20] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0013300 | OsLima_03g0013300.02 | Chr03 | 10240856 | 10242489 | - | NAM | ||
| CDS seq | atgatttttttttcatatatcgatcaatcacacaatcgatcgatagctgcagaaacatcaattcgatcttcctcatatcacatatgtatgattgcggccgtgttgttgcagtatttcctgtaccagatcctgcgggggctcaagtacatccactcggcgaacgtgatccaccgcgacctgaagccgagcaacctgctgctgaacgccaactgcgacctcaagatctgcgacttcgggctggcgcggccgtcgtcggagagcgacatgatgacggagtacgtggtcacccggtggtaccgcgcgccggagctgctgctcaactccaccgactactccgccgccatcgacgtctggtccgtcggctgcatcttcatggagctcatcaaccgccagccgctcttccccggcagggaccacatgcaccagatgcgcctcatcaccgaggtgatcgggacgccgacggacgacgagctggggttcatacggaacgaggacgcgaggaagtacatgaggcacctgccgcagtacccgcgccggacgttcgcgagcatgttcccgcgggtgcagcccgccgcgctcgacctcatcgagaggatgctcaccttcaacccgctgcagagaatcacagttgaggaggcgctcgatcatccttacctagagagattgcacgacatcgccgatgagcccatctgcctggagcccttctccttcgacttcgagcagaaggctctaaacgaggaccaaatgaagcagctgatcttcaacgaagcgatcgagatgaacccaaacttccggtactag
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| Protein seq | MIFFSYIDQSHNRSIAAETSIRSSSYHICMIAAVLLQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPSSESDMMTEYVVTRWYRAPELLLNSTDYSAAIDVWSVGCIFMELINRQPLFPGRDHMHQMRLITEVIGTPTDDELGFIRNEDARKYMRHLPQYPRRTFASMFPRVQPAALDLIERMLTFNPLQRITVEEALDHPYLERLHDIADEPICLEPFSFDFEQKALNEDQMKQLIFNEAIEMNPNFRY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0013300 | OsLima_03g0013300.01 | Chr03 | 10240856 | 10243611 | - | NAM | ||
| CDS seq | atggacggggcgccggtggcggagttcaggccgacgatgacgcacggcggccggtacctgctctacgacatcttcgggaacaagttcgaggtgacgaacaagtaccagccgcccatcatgcccattggccgcggcgcctacgggatcgtctgctccgtgatgaactttgagacgagggagatggtggcgataaagaagatcgccaacgcgttcaacaacgacatggacgccaagcgcacgctccgggagatcaagctcctcaggcacctcgaccacgagaacatcataggcatcagggatgtgatcccgccgccgatccctcaggcgttcaacgacgtctacatcgccacggagctcatggacaccgacctccatcacatcatccgctccaaccaagaactgtcagaagagcactgccagtatttcctgtaccagatcctgcgggggctcaagtacatccactcggcgaacgtgatccaccgcgacctgaagccgagcaacctgctgctgaacgccaactgcgacctcaagatctgcgacttcgggctggcgcggccgtcgtcggagagcgacatgatgacggagtacgtggtcacccggtggtaccgcgcgccggagctgctgctcaactccaccgactactccgccgccatcgacgtctggtccgtcggctgcatcttcatggagctcatcaaccgccagccgctcttccccggcagggaccacatgcaccagatgcgcctcatcaccgaggtgatcgggacgccgacggacgacgagctggggttcatacggaacgaggacgcgaggaagtacatgaggcacctgccgcagtacccgcgccggacgttcgcgagcatgttcccgcgggtgcagcccgccgcgctcgacctcatcgagaggatgctcaccttcaacccgctgcagagaatcacagttgaggaggcgctcgatcatccttacctagagagattgcacgacatcgccgatgagcccatctgcctggagcccttctccttcgacttcgagcagaaggctctaaacgaggaccaaatgaagcagctgatcttcaacgaagcgatcgagatgaacccaaacttccggtactag
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| Protein seq | MDGAPVAEFRPTMTHGGRYLLYDIFGNKFEVTNKYQPPIMPIGRGAYGIVCSVMNFETREMVAIKKIANAFNNDMDAKRTLREIKLLRHLDHENIIGIRDVIPPPIPQAFNDVYIATELMDTDLHHIIRSNQELSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPSSESDMMTEYVVTRWYRAPELLLNSTDYSAAIDVWSVGCIFMELINRQPLFPGRDHMHQMRLITEVIGTPTDDELGFIRNEDARKYMRHLPQYPRRTFASMFPRVQPAALDLIERMLTFNPLQRITVEEALDHPYLERLHDIADEPICLEPFSFDFEQKALNEDQMKQLIFNEAIEMNPNFRY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.214740 | 0.454927 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0285800 | RBH | 2.278801 | 1.455759 | 12.789047 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g17700 | RBH | 1.072653 | 0.985468 | 0.930892 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0285800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0013530 | RBH | 0.300940 | 24.081772 | 3.775802 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0013350 | RBH | 0.0 | 2.885247 | 2.819146 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0013380 | RBH | 0.747487 | 17.894567 | 6.383482 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0013350 | RBH | 0.0 | 0.376392 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0013190 | RBH | 1.324272 | 10.913373 | 6.789819 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0167500 | RBH | 3.5446615 | 101.791248 | 8.3182545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0013100 | RBH | 0.239627 | 0.797013 | 0.152713 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0168900 | RBH | 4.533683 | 113.126282 | 1.606622 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004020 | RBH | 0.254407 | 0.591054 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0013280 | RBH | 0.115152 | 4.849887 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0013360 | RBH | 0.0 | 11.792964 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0013230 | RBH | 0.232881 | 2.047878 | 0.549922 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0013180 | RBH | 0.074243 | 8.150836 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G013130 | RBH | 0.0 | 1.859192 | 0.224442 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0013000 | RBH | 0.0 | 29.370920 | 2.793865 |
