Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0007360 | OGI:03014560 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:5486364-5492839 | ||||||||
| Gene Symbol | OsFbox132, Os_F0228 | ||||||||||
| DNA seq | gccgggatgtattcctcacctcccaagggtttaaagtggcgcagtcgatttctcgctcgttcgatccgagcggggtatcgtcgtggttatggggaagctgctggacctgaagcggctcatgtccgtgccgaaggagcggaatcgtcgtcggcggcagcggcaaatccgagcccgcagtaaggcctccctcagtcgttctgcctctctagtctggcatctgttatttgtttagaatatcactgctccttccattgtcttgtgccgttgcacagcactcggcatcgctattttgcaattgggatgcttttcagcaattttttagtgttatttacagtttatttttcggcatacagattattttggatttaactaaaccaatgagctggatacattaatgttcatttcgattgtcagcatccactaaaaacatagacttcggtatccaaagataacatggaagcccatgcatagtttcggcagtataggggtaaatatcgggtaaacgagtgcaaatgtgcaatgtctcaactgggtagaacatatgaagtgcccatatgtacataccctaaatcttaagaaaatttggtcggccgcttctttggtcagcccagccaaaaagAaaaaaaaaagaaaaagaaggaagaagtagtgcgtgcccataaaactatattgcttccaatataagcaggacccctctaacctatcgtctaaagaggtgtaaaacaaaatatggtagacttgcagtattttcctgttgcaaaaggagatcactccctgctttgaaagcaaataaggttttcggcatacaagcaactactgggaacaccggcttacatagagagctcaaacaacgttctcaccctagccaaaggacagcagtccaaaaacaaagaggaaaataactaaaatggtaaactaaaagacaagtgagctgaaaagcaagtttagatcttggttatgaactcatccattttagttatctcctctggtctgaacaacacccaccagaactacacgaagaaaagatttatcaactacgggactgtctggaagcactatctgctgaggcgccgtggccgcgctttgctgcagcaacagcggctgcagaagccaatagaaagcacgctgttcccacaatagattatttttttagggaatacgctagaagcatatctttgtattaagaggaataaaaattatttacaagaaagattgaaggggacggggtactggaatgcaacaaggacttaggctacaatctcacaaccaaattgaacgacctagggaccctagaaactagagaccaagcgccggaatcgccgcctttgccaggcgccacagctccgcctccgcggccatagctcttgcaatttccgcccagggctgccgctggagattgaacaccaggttgttcctctctttccagatcatccatgctaccaaggtcgcaatggtgtcgaatccccgacaccgatccttcacgactttcttcctgctaaggcagagccactgatggaaggaggcctcttgcaggggtaggcaatccagttgattgattgccgagagtgcccaccaccagagttgacgggattcagagcagccaaccaagatgtgatctatacaatagattattttatacagcagaaattcaacgttgcagccgaacggctgtgcagttcagctgcagcccaaaccgctgcagtttaggtcttccaacggtcaatatgtcagctgaggaagttattagcaatttctaataagccaagaaagctgtaaacagtacaggatcaaagaatataatgatccacacccccagttcaaccaagaagctaagaattcagaaatatttgtaggaatattcaattttgtgccatggtaacgcctctttcaaacagcaccaagagcaacgagcaatgtgacattgaaagaaaacatggtacacactttctacgcaattgcactggatgcaattaacatcccctttccaattttttttcttcagctgtagatctatcttgataaagaagccaaacggagatttttacttcgagaggaatttcgcatttccacaatctgcacatcctccaactgatgacaccccagagaatgatcctatcatataaagacaaggcttagttattttcagattatttacctgattgttgaaacggattatttgccccacgcttcgaaaaatacattttctcgaaaaactttcttctcttgtattgcttcgaccacttttttaaagttatttgttaagtttatttatcagaatatttaatttatccctataatcaagtagataatcctcatcaataatctgtttcaaaatgaccttagtggtgtagacttgctctttttttttcataataagaaccaatgctcaagggaagtttttttaatggagacaaattggatttaaagtcactagagtttttttttttcaaaaaaatcagacaaaaggtaaccaaattgatttgtggtgtgcacttgtgtgcttgatttaattgtttgcttgtatttgtgtctgtacataaccatgcatgatctattgtagatggttcaattgattcagtggctaaaagaaagggatcactctgccaacaagttgcaaattctgatggcgagagaagaacaagatattcagggcctaaccttccagaggtatgacaccaaatgctgataatgaagctcttatattagagtaaggtatctacgagtctatgactgctataagtagcctctaactgcgcactctcgtggtcctatggtacctatatcaaattgtatgaacaggtctttagtgctgcaattttctacagttctgcatgaatagcttttctctattctagctgttacaacttaaccactcccatagaaaattgtctgtgatgggtcttagatccccttgatccttgttgaagcagttgaatttttagagcttccctcccttataatctggttccggtacttgtttttctgtgtattctgtggtctaagatccagtttttcgtcatcatccatcaagtgcatgcctacctggttgagtttaaccaacttccgaagctactagctagtcaaatacgctggtatctatgaaggggccttctattgcttttcaggtcaatatgcattccattattatttgttcactcttgctactcccatattctgagtgctcatgtctactgataatgtggttactgtttccgtttcatccaactccttctcatcttcaaagaaaattatatagtaaatatagttaatcttaacctgttaaccgtaatctaaactgtttgtaccatcaattcataaaccatggagatatgtgaatgtgatgttgaataacctttgcagatagagtagaccaatacagtagcagctccatcatagtttcactccaatcagtaactgtattttttttctcaagcataagaattctgagatcatctttggctccaatgcatgataagctttactttaaccactattaggtcacttgcaagcacttgccttcatactggcccttgcttcctatgaaggtacaatctaataaaattagttggtttgtaggttagctataatccaaacctggcaaggcaccaaacaagttctattttcctttattttcgaacaacgcaggagagctgcatgccattccattaagtagaaggaaagaaatacaaagttaggacaagccaacgtagcaagtcccattaagtccattttcctcaaagtaacagctttactcaacttcttatttcctttagtgcaagaatcaatttttgctggggattcctctggttgtcttttaactgtagtattgcaggattaccaggggtatgtcctctcattagtaaatcacagagttactattggcaacttggaagtgatgaggactgcctatagacttctgaggttggtcactgctggtaacccagagttagatttggcatgaacctttgtcattgtatcgcatcacccttcttcctcttccaccaggcagatttctgagttcataacaacaacaacaacaacaacaacaatatttagcatgccatgttctacatcaataactgcaggtgatgggtgatttcctgccacgtccttggctgaaaccataatactttgctgtctgtgcctctgtggcccatcttgcaatgggtattgagattctggacaacaggtctattagaagatggttgacaacatacatgattatactaggagagcgagaaagctttgaagtaaccatgccaattgcgtttgcttcacagttcatgtagagtggtttcactgtttcaccctaatttcagtataaattgtgggagaagggcatattgttgtaggatgcattcttgtatctggtctgttgagtctattttctcttacagcccagccgtcaaagctatagaaaattgtaccttataaataatatacatgtttattttatttgttttctactttgactaatttataggatgcttttgtgcaaaaatgaacatattagtttatgcatatgcgcatagacctttattggttgtgtagcttaactcagtaagaataggtctcatatttaggtaatcattactagtcactgactgcagtccagtaccccttttaggacagccactaataaaactttgaaagggaaaaggataaaatgaaaatgtgctgttcagtttccctaccacaaacccgaagggttatggcaaagctactagactgttttcccttccaattgatcaagctgtcaccttgacggtatcttctaacctatatccttgcttctgcatgcaggacatctggtgccatatacactccctgatgccattcaaagatgctgcccgtgctgcatgtgtgtctcgtgcttttcgtcgttcctggcaacaccgccccaatcttatattttgtattggaacactggggttggatttcatcaacaaaattgatcgtattataaaaaaccactcagacattggcatcaaatcgctacagttagaatatgatactttttgcaatgctagaaggagcgctagcatcagctatcatctcaataattggcttcagattgctgttacaccatggattgaagaactaatccttacactgtcgctatcttcatacaatgtggattacaatttcccgtgctcacttttatctgatgggagaggaagttcattgcgacatctttatcttggcagttgtttctttcatcctacagttaatcttgaattgagaaacctgacgaggttgcatctggttactgtacatattacaggagatgagtttgggtgccttcttttgaattcttatgctttggagcgattggaacttaaatattgttatggaataatttgtctgaagataccttgcctgttgcaacgccttagccacctggaagtgtttgaatgcagaatgctgcaagccatagagaataaggctccaaatctttgcagttttgaccttggagctaggcaggtacggctcttgcttggtgaatcattgcaaatgaaaacactatccttggactatcctagtgccgtctattatgctcgtgcagagcttccatccaatgtgccaaatcttgaaattctcaccatttgctcggatcacgaggtatatccacaaacatgaaatgattatggacgtgcttatgtttatataacaatacttgtaccttcgaaaaatgtcatcagtctgattatctttatgcagatggttgatacaccaatgttgcctagcaaatttttctatctcaagtgcttgactattgatcttgcttggagactttccccagcctatgattatttctctctgatttcttttcttgacgcttctccttccttggagactttttgtctagaggtaagctaattttcattctgcaaacttatcagtgactggtgacaaccatcaatttcaagtatattggcttttcatctctagatatcacaggaccgaatggagaatgaattgattattggagatatgtcacatatgaggcaaatgctagaacaccgtcatgacaacctccagagcgtggagattattggcttttgctatacaaagagcttgatcgagctaacatgtcatattcttgacaatacaacgtcgcttaagcaccttaaactggatactactcgtgatgtttttagctgttctacaggcaaacacgacaaatgcttccatatgggtaaggatatgctcaccgaagccaagaaagcagttttggcaattgaaacttacatcgagccaaaagttccctccactgtcatgctaagtgttgtgaaaccttgcaaccgttgccatgttgctgaatcttagttctatttttttcctaacataattcctatgtagatgattatggagttttttaactgatcatgttttctgtcttcacagaactgaattacgagtcacatccaattgaattatgagtcacatctgttcgatctcttttttcccaattc
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| CDS seq | atggggaagctgctggacctgaagcggctcatgtccgtgccgaaggagcggaatcgtcgtcggcggcagcggcaaatccgagcccgcaatggttcaattgattcagtggctaaaagaaagggatcactctgccaacaagttgcaaattctgatggcgagagaagaacaagatattcagggcctaaccttccagaggacatctggtgccatatacactccctgatgccattcaaagatgctgcccgtgctgcatgtgtgtctcgtgcttttcgtcgttcctggcaacaccgccccaatcttatattttgtattggaacactggggttggatttcatcaacaaaattgatcgtattataaaaaaccactcagacattggcatcaaatcgctacagttagaatatgatactttttgcaatgctagaaggagcgctagcatcagctatcatctcaataattggcttcagattgctgttacaccatggattgaagaactaatccttacactgtcgctatcttcatacaatgtggattacaatttcccgtgctcacttttatctgatgggagaggaagttcattgcgacatctttatcttggcagttgtttctttcatcctacagttaatcttgaattgagaaacctgacgaggttgcatctggttactgtacatattacaggagatgagtttgggtgccttcttttgaattcttatgctttggagcgattggaacttaaatattgttatggaataatttgtctgaagataccttgcctgttgcaacgccttagccacctggaagtgtttgaatgcagaatgctgcaagccatagagaataaggctccaaatctttgcagttttgaccttggagctaggcaggtacggctcttgcttggtgaatcattgcaaatgaaaacactatccttggactatcctagtgccgtctattatgctcgtgcagagcttccatccaatgtgccaaatcttgaaattctcaccatttgctcggatcacgagatggttgatacaccaatgttgcctagcaaatttttctatctcaagtgcttgactattgatcttgcttggagactttccccagcctatgattatttctctctgatttcttttcttgacgcttctccttccttggagactttttgtctagagatatcacaggaccgaatggagaatgaattgattattggagatatgtcacatatgaggcaaatgctagaacaccgtcatgacaacctccagagcgtggagattattggcttttgctatacaaagagcttgatcgagctaacatgtcatattcttgacaatacaacgtcgcttaagcaccttaaactggatactactcgtgatgtttttagctgttctacaggcaaacacgacaaatgcttccatatgggtaaggatatgctcaccgaagccaagaaagcagttttggcaattgaaacttacatcgagccaaaagttccctccactgtcatgctaagtgttgtgaaaccttgcaaccgttgccatgttgctgaatcttag
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| Protein seq | MGKLLDLKRLMSVPKERNRRRRQRQIRARNGSIDSVAKRKGSLCQQVANSDGERRTRYSGPNLPEDIWCHIHSLMPFKDAARAACVSRAFRRSWQHRPNLIFCIGTLGLDFINKIDRIIKNHSDIGIKSLQLEYDTFCNARRSASISYHLNNWLQIAVTPWIEELILTLSLSSYNVDYNFPCSLLSDGRGSSLRHLYLGSCFFHPTVNLELRNLTRLHLVTVHITGDEFGCLLLNSYALERLELKYCYGIICLKIPCLLQRLSHLEVFECRMLQAIENKAPNLCSFDLGARQVRLLLGESLQMKTLSLDYPSAVYYARAELPSNVPNLEILTICSDHEMVDTPMLPSKFFYLKCLTIDLAWRLSPAYDYFSLISFLDASPSLETFCLEISQDRMENELIIGDMSHMRQMLEHRHDNLQSVEIIGFCYTKSLIELTCHILDNTTSLKHLKLDTTRDVFSCSTGKHDKCFHMGKDMLTEAKKAVLAIETYIEPKVPSTVMLSVVKPCNRCHVAES |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0007360 | OsLima_03g0007360.02 | Chr03 | 5488743 | 5492809 | + | NAM | ||
| CDS seq | atgccattcaaagatgctgcccgtgctgcatgtgtgtctcgtgcttttcgtcgttcctggcaacaccgccccaatcttatattttgtattggaacactggggttggatttcatcaacaaaattgatcgtattataaaaaaccactcagacattggcatcaaatcgctacagttagaatatgatactttttgcaatgctagaaggagcgctagcatcagctatcatctcaataattggcttcagattgctgttacaccatggattgaagaactaatccttacactgtcgctatcttcatacaatgtggattacaatttcccgtgctcacttttatctgatgggagaggaagttcattgcgacatctttatcttggcagttgtttctttcatcctacagttaatcttgaattgagaaacctgacgaggttgcatctggttactgtacatattacaggagatgagtttgggtgccttcttttgaattcttatgctttggagcgattggaacttaaatattgttatggaataatttgtctgaagataccttgcctgttgcaacgccttagccacctggaagtgtttgaatgcagaatgctgcaagccatagagaataaggctccaaatctttgcagttttgaccttggagctaggcaggtacggctcttgcttggtgaatcattgcaaatgaaaacactatccttggactatcctagtgccgtctattatgctcgtgcagagcttccatccaatgtgccaaatcttgaaattctcaccatttgctcggatcacgagatggttgatacaccaatgttgcctagcaaatttttctatctcaagtgcttgactattgatcttgcttggagactttccccagcctatgattatttctctctgatttcttttcttgacgcttctccttccttggagactttttgtctagaggaccgaatggagaatgaattgattattggagatatgtcacatatgaggcaaatgctagaacaccgtcatgacaacctccagagcgtggagattattggcttttgctatacaaagagcttgatcgagctaacatgtcatattcttgacaatacaacgtcgcttaagcaccttaaactggatactactcgtgatgtttttagctgttctacaggcaaacacgacaaatgcttccatatgggtaaggatatgctcaccgaagccaagaaagcagttttggcaattgaaacttacatcgagccaaaagttccctccactgtcatgctaagtgttgtgaaaccttgcaaccgttgccatgttgctgaatcttag
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| Protein seq | MPFKDAARAACVSRAFRRSWQHRPNLIFCIGTLGLDFINKIDRIIKNHSDIGIKSLQLEYDTFCNARRSASISYHLNNWLQIAVTPWIEELILTLSLSSYNVDYNFPCSLLSDGRGSSLRHLYLGSCFFHPTVNLELRNLTRLHLVTVHITGDEFGCLLLNSYALERLELKYCYGIICLKIPCLLQRLSHLEVFECRMLQAIENKAPNLCSFDLGARQVRLLLGESLQMKTLSLDYPSAVYYARAELPSNVPNLEILTICSDHEMVDTPMLPSKFFYLKCLTIDLAWRLSPAYDYFSLISFLDASPSLETFCLEDRMENELIIGDMSHMRQMLEHRHDNLQSVEIIGFCYTKSLIELTCHILDNTTSLKHLKLDTTRDVFSCSTGKHDKCFHMGKDMLTEAKKAVLAIETYIEPKVPSTVMLSVVKPCNRCHVAES
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0007360 | OsLima_03g0007360.01 | Chr03 | 5486364 | 5492839 | + | NAM | ||
| CDS seq | atggggaagctgctggacctgaagcggctcatgtccgtgccgaaggagcggaatcgtcgtcggcggcagcggcaaatccgagcccgcaatggttcaattgattcagtggctaaaagaaagggatcactctgccaacaagttgcaaattctgatggcgagagaagaacaagatattcagggcctaaccttccagaggacatctggtgccatatacactccctgatgccattcaaagatgctgcccgtgctgcatgtgtgtctcgtgcttttcgtcgttcctggcaacaccgccccaatcttatattttgtattggaacactggggttggatttcatcaacaaaattgatcgtattataaaaaaccactcagacattggcatcaaatcgctacagttagaatatgatactttttgcaatgctagaaggagcgctagcatcagctatcatctcaataattggcttcagattgctgttacaccatggattgaagaactaatccttacactgtcgctatcttcatacaatgtggattacaatttcccgtgctcacttttatctgatgggagaggaagttcattgcgacatctttatcttggcagttgtttctttcatcctacagttaatcttgaattgagaaacctgacgaggttgcatctggttactgtacatattacaggagatgagtttgggtgccttcttttgaattcttatgctttggagcgattggaacttaaatattgttatggaataatttgtctgaagataccttgcctgttgcaacgccttagccacctggaagtgtttgaatgcagaatgctgcaagccatagagaataaggctccaaatctttgcagttttgaccttggagctaggcaggtacggctcttgcttggtgaatcattgcaaatgaaaacactatccttggactatcctagtgccgtctattatgctcgtgcagagcttccatccaatgtgccaaatcttgaaattctcaccatttgctcggatcacgagatggttgatacaccaatgttgcctagcaaatttttctatctcaagtgcttgactattgatcttgcttggagactttccccagcctatgattatttctctctgatttcttttcttgacgcttctccttccttggagactttttgtctagagatatcacaggaccgaatggagaatgaattgattattggagatatgtcacatatgaggcaaatgctagaacaccgtcatgacaacctccagagcgtggagattattggcttttgctatacaaagagcttgatcgagctaacatgtcatattcttgacaatacaacgtcgcttaagcaccttaaactggatactactcgtgatgtttttagctgttctacaggcaaacacgacaaatgcttccatatgggtaaggatatgctcaccgaagccaagaaagcagttttggcaattgaaacttacatcgagccaaaagttccctccactgtcatgctaagtgttgtgaaaccttgcaaccgttgccatgttgctgaatcttag
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| Protein seq | MGKLLDLKRLMSVPKERNRRRRQRQIRARNGSIDSVAKRKGSLCQQVANSDGERRTRYSGPNLPEDIWCHIHSLMPFKDAARAACVSRAFRRSWQHRPNLIFCIGTLGLDFINKIDRIIKNHSDIGIKSLQLEYDTFCNARRSASISYHLNNWLQIAVTPWIEELILTLSLSSYNVDYNFPCSLLSDGRGSSLRHLYLGSCFFHPTVNLELRNLTRLHLVTVHITGDEFGCLLLNSYALERLELKYCYGIICLKIPCLLQRLSHLEVFECRMLQAIENKAPNLCSFDLGARQVRLLLGESLQMKTLSLDYPSAVYYARAELPSNVPNLEILTICSDHEMVDTPMLPSKFFYLKCLTIDLAWRLSPAYDYFSLISFLDASPSLETFCLEISQDRMENELIIGDMSHMRQMLEHRHDNLQSVEIIGFCYTKSLIELTCHILDNTTSLKHLKLDTTRDVFSCSTGKHDKCFHMGKDMLTEAKKAVLAIETYIEPKVPSTVMLSVVKPCNRCHVAES
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 5492234 | 5492325 | + | OsLima_03g0007360.01 | OsLima_03g0007360.02,OsLima_03g0007360.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.046647 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0202500 | RBH | 1.633528 | 0.401219 | 1.993546 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g10540 | RBH | 1.107672 | 0.269531 | 0.511945 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0202500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0008650 | SBH | 1.298386 | 11.854047 | 5.039929 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0008610 | SBH | 0.150604 | 1.827492 | 3.580363 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0007550 | RBH | 0.665011 | 3.113126 | 6.339255 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0007520 | RBH | 0.040154 | 0.099309 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0007400 | RBH | 1.764400 | 0.0 | 4.884785 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0090600 | RBH | 1.3935765 | 2.228886 | 0.5838605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0007340 | RBH | 0.000000 | 0.177733 | 0.103451 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0091100 | RBH | 1.192437 | 1.5639945 | 5.3268815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0015800 | RBH | 0.027323 | 0.039906 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0007420 | RBH | 0.358574 | 3.785541 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0007410 | RBH | 1.326425 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0007420 | RBH | 0.489844 | 0.268392 | 0.221545 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0007390 | RBH | 0.119443 | 0.775611 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G007420 | RBH | 0.0 | 0.000000 | 0.791231 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0007250 | RBH | 0.535188 | 0.000000 | 1.325869 |
