Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0008610 | OGI:03016520 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:6206353-6213365 | ||||||||
| Gene Symbol | OsFbox132, Os_F0228, OsFbox133, Os_F0449 | ||||||||||
| DNA seq | ccccgctcggcgacgccgacgcgatttcctctcctcgcgccttactgaattcgaaacgaaattgtagatcatatagcagagagagagagagagagagagagagaggaagcagacgcggaccccttgatttctcggctagatctgagatatcatcgcatcatgggactgctggggttgaatcggctcatgtccatacagcgggagcagcgctgtcgccaaatcgaagccagtaagccgcatgttggatctgtgctactgctatctgcatcttgtgtttcccccccTttttttttttatgtgttatataacttctccaatacaattaaagctggttgctacgctttatatcttacagaaagacaggactcagccgccaccagtctgttcttccttacaaaaatcctcttcttgatgtgcttgctgttttttcatggtttttgtgagcttcaaagctaaccttgttacaagcttgttgctttttttcacgatagatgttgtcatagttagaggagctgggattatccacccaaacacaaaatttggcatactgtattttaatagtgtgcgactatatgaggaggttggacacttggacatggaactcacggggggaggagagcagtggtggctgagaaaataggaattccacttgctgtcggctgatgagctccacggtattagagaaaaagtcacaccgttttgcaaaagaatacctctgctcaattggcggagtttttttcccattaatatactgtagtaacaagttgcagcttaaaacagttactaagtaggataatggatcattgaatctgtgtgtatttcagtgctttgatgccttcatctgtttgttttcttccaattatatacacaatgtcataaccattgtgtgttgcagatcgtcttcttgcatccactgataaaagaaaggggtctccctgcaaacaagataattcccgatgcagcaaaagagagagatattctcagccagaccttccggaggtacaccataaaaaccaaactgtcacaaaacgtgtcgttttggacataccttttctcaagcattcaaaactttgaaaataaatatctttatgattttttgcttgcatacatggacttgaatgtctaaaaaagtaatatcataatcttatcgtgtagtcgtgtactacaaatctattataatgtaacttagtagtcaatattgtgtttgagagaccatgttggtgtccaaaacggcatgcttttgtgagcggatggagtaaactatactaaagtgtcaccattgctgctctagccacaaccacaaagtgttgggtcagttctaataaaatagaaattcctgaatggatcttgtagtgctgcaatcttgtactatcgtacttttttatcggcataacaaattctttataagctatcgtgtactttaactcctgcagataactgtttgttatgagtcttagatttctagtatcttgatacgcagtagacttcccgagctatttcacttattaactagccatttggtcgtgcgttgcacgactttagatacctgtagaaaagttctatatttatgggtcataatatatcatattatgaaattgtcccttccctcaatcaggggtatccaatttttcctgtattttcatgtctcgcatctttagaagcctgctccaagttcgcataaaaagatggccctgaaattgacttcaacaggtgttttgagaattttacttcaggctccatcttgttccatgcttgccacagcgctattgttaaatctgtatctcataaccggataagagtacaatctgatccatgcatctcaaaattaatgggacaccttctggtttctatgaaatcacaacctggaacatggcaggtgcaaagggctaggcattcatcacaaccgcaacataggagcaaaccttttggttcctttcgccgtttctataggcgagctggctgggtaaaggaagcccagtatacatataagccctgtaaacgtagaccataatatgataataggattaactctaaatttatttttcttaaaaaaacatacgacttggtaaatagttagttagaactaacctatatttgcaagtaaggttcaagtaccatgttgaagatcttttggtttccaaagttcagtcatctcatccagtggctagtacatgcttattccacaatattttctcataaaatacacaataatttaatttatgacattgaaagggaccggacaaacaattagttaaattctgaatctacgtgaaatcaaccattagtttctcgtgaaacttataatggcaccattagaccattgggccaacaaaatattaaatctaaagtaggtgctttctaaagttgactaataataataattatcatgcttgcacaagacgcaacctaaatgtaggtagaatttcacttccaggttgttacatagtatgcactgtactaagcattataagtttgaagttgataagcaatccacatggttgaacacatattagaaagttagaatcggcgtctctgaagttctgagattatttgtacattttagtaccgagaaaaatattacctggtttggatggtgccagcttccttgttggtaggatctgcaagttccaaaactctcaaattttaacagaggagatacttttatggttttacctttggggagataattgcacctgttgcgtctgtaccatcatttgggggtgtttctatcataggattcaaagtatatatttgggggaggaagtgaagccaaaacgttcagtatgaaatggttagtatctaacctgtgaaaaagatgatcccaataccatttattttgggacgtatgttcagatgtcatctgctaaaccagtggaatcatagctaaaaaacaaaaggttgagtagatacattccaatttggttaaatgggtatatacaacattccaatttgattaaatgggtatatacacaaaagtttgggtggtttctagaaatttcgaaaattatctttggaggcacaattgaaatgctttcttaatagaatttgtgcgaagaaaataaaaaggacttgatttgatgacacattcaacaacaataaatttcttgttctatcaaacaatagcattcctcaacaactcctatccagtttttaccattcaagaagtactaatgttcatgattcataccctagatgcatggtagcaagttgaataaaaaatgaaaccacaaattttgaaaggacatttatttcataactatcacttcgggtaaagacaaataacgcaaatcaatattacagacatttcaattcctgctttaaaactcgtaacatcaagaaaaagaaatacctgataatacaatatttgattgctttattatttgcttcataagtcatcagaattcattcttaatcagtgaatacacttcacagcaaactggaaactaaatgggtacttagagtcaaatacatttgatctttagtagtcaaatttcatttaagcttaagcaaatcaccttgtagttgtagaattatcttttataggtttccactcccctgcttgctgcagctttgctcgttagacacacatatatagatacacaaatatagcaatacaccagtcatttatataatgttaggagcaaccttttttttttttctaaacacatgaatagctagtagtgttggggatggggatgaggaggaatagggcagggggaggtggaagcggagaaaggggaggtatggattcctttgcttcccaccgcaggcgtctttgaccggccagtccccgtacatctatcctcatccttctcgatgccggtggctcttcttcttacctctccccattgatgtggtggagattgggaggagacatggcggctttggagatggggggaggacgatgcacatcagcggggaggatgggagtggaggaagcggtgatgggattggggaggaggaggcgagccgagtggcagcagcggaagcgcggagcacacgatccggcgcctccgcctcccgggagtggggcggcgcagcgactagggaaaggggaggcggcctcccgagatggtgtagtaggggtgaaaatgaatggtaagactagggaggtggaaggatcttattgcgaaagaatttttacgaaggatctagaatagatttttccaatcaatgaatccaacagctcacatcatctgtaggggcaatcgggcggcttatgtttttttgatgacgtggcgcaatctggtggtaaaaaactttacttttttcactactttagatagggttttgagcttcttttgttgtgacttctgtgaccgagatccaaaatcctgctgtaaggcgtatcaaaaccttctacagcttgtcctcggcttcccacaactatatgtgtggtttatgggatattctcatccagctcataaccaactttggcaaaggaggtccggcacaccaatctttgaagaacacttccttgatgattttcagatcaataaatattccattctcacgtggcaagtggcaactcttaatactgtccataatttgggtgtttgaattgaccgattatatgcctgttgatgctttccatactgcttccactacataagtagtatggtatacattgcgatcctaggtaaactgccagcatatgatctcattttctgggctatccattttctcaaactcaagaagatatgccattgtgagttcactagaatatgcagacaaaacagttgtaatatctggcaatcacaatctttcttgattacaagcagccacatggtgcttgctcttgcaactgtttctagaattttttcagtgtttggcaaattacctttctttcaatctaggttcagatgataatggtaatgataatgttctgaaaataaggaacaatttggagacactggacagttggataacatctattgtctaaccatagcttgattatcaaacaaactttgatgctcatgaatttacctttctagtacaacttaaaatgaaagcacatcatggtacaataaacgcatactgacctatggactgctcttctctacggaacaattttgcttccaattcaatatgtacctctgcaatgcagagcattttacacaaccatgtgccaccttgctacaatgctacgacatatattgttttgctttctctaattgagttgattgtttgcttctaaaattccaatgttatactttactcaaatgcttgtgcatgcaggacatttggcgccatatacattccttactgtcacttcaagatgctgcccgtgctgcttgcgtgtctcgggcttttctatgtttatggaggtgccgtccccacctcaccttcagtttgcaaactctgggcttgagtgaaatggcatgtaaaaagggtggaatagctagagattacaataaaaaagttgaccgcatactgaaaaaacactcaggcacaggaatgaagaaatttgagatcgaattctatggtccttcaaatgcaaacacctattatcatctcaataattggcttgagattgctattacatctggaattgaagaactcacccttaggttgactccagatgtgacaaagtacaacttcccttgctcacttttatctgatggaagaggggacttgattcagtctcttcacctttcccactgttccttccgtccaacagttgaggttgttagcttgagaagcctgacaagtttagatctatgtttggtgcgtattacggatagagagttaggaattctcctttccaattctttagttttggagaagttgggaatcaaatactgcgacaagattaattgcctgaagataccttgtgttctagagaggctcagttcactggaagtgtttgaatgttacagcctacaaatggtagagagcaaagctccaaatttatgcagtttttgctttggaggtgaacaggtacagttctcaattggagaaccgctgcaaatgaagaacctgcaagtgatcttccccaacagtatcagttttggccgtgctgaacttccatttagtatgcctaatcttgaaactcttaatatcagttcacgttgtgaggtatgctctacacttatgcttacagcagtcgccacgctctgatatataattgttctgagtcatctttatgcagatgtcccatacaccaactgcacctggcaaattccttcacctcagatacttgagtattacttttgcgggatggagattttcacgtgcctacgattatttttctcttgtttcttttcttgatgcttctcctttgttggagactttcatcctatgtgtgagttactattcattctgcaaggcatatttagtaactgtgccatttataatttattgacatatcatcattggttttcaccttcagattttacagaaaggaaagcatgacttaactttaagggatcctatatatccaaggcaaatgtctgaacgccagcatgacagcctaaagaatgtgaagatcaatggtttcagttccacaaaaagcttggttgagctaacatgccatattcttcagaacacaacttcgcttgagtgccttacattggacactactcgcattgagtttcggtgttctgatagtagtgttgatgtatgtctcccatcggacagggatgctatcaagggagcgcataaagcgctcttggctatcagaacatatattgagggtatagttcccgctacagtcaagttcagtgttctagagccttgccgccgttgctacgcttggtaactatgccaaatcattgtaattaaacagtatttaattgtgtaacttcagatgcgttgtgctttctgttttaaaatcagtggtgtactggtgtccataaaaatgctgaggtatgtgctttggtttattattaatctctttctgtaacttaagatgtgtcgtgattttgttccaagttattggtggtctgttatattcaggactgtgctttggttaatttgatactaataccaaccagaccatctgatattaatcc
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| CDS seq | atggcatgtaaaaagggtggaatagctagagattacaataaaaaagttgaccgcatactgaaaaaacactcaggcacaggaatgaagaaatttgagatcgaattctatggtccttcaaatgcaaacacctattatcatctcaataattggcttgagattgctattacatctggaattgaagaactcacccttaggttgactccagatgtgacaaagtacaacttcccttgctcacttttatctgatggaagaggggacttgattcagtctcttcacctttcccactgttccttccgtccaacagttgaggttgttagcttgagaagcctgacaagtttagatctatgtttggtgcgtattacggatagagagttaggaattctcctttccaattctttagttttggagaagttgggaatcaaatactgcgacaagattaattgcctgaagataccttgtgttctagagaggctcagttcactggaagtgtttgaatgttacagcctacaaatggtagagagcaaagctccaaatttatgcagtttttgctttggaggtgaacaggtacagttctcaattggagaaccgctgcaaatgaagaacctgcaagtgatcttccccaacagtatcagttttggccgtgctgaacttccatttagtatgcctaatcttgaaactcttaatatcagttcacgttgtgagatgtcccatacaccaactgcacctggcaaattccttcacctcagatacttgagtattacttttgcgggatggagattttcacgtgcctacgattatttttctcttgtttcttttcttgatgcttctcctttgttggagactttcatcctatgtattttacagaaaggaaagcatgacttaactttaagggatcctatatatccaaggcaaatgtctgaacgccagcatgacagcctaaagaatgtgaagatcaatggtttcagttccacaaaaagcttggttgagctaacatgccatattcttcagaacacaacttcgcttgagtgccttacattggacactactcgcattgagtttcggtgttctgatagtagtgttgatgtatgtctcccatcggacagggatgctatcaagggagcgcataaagcgctcttggctatcagaacatatattgagggtatagttcccgctacagtcaagttcagtgttctagagccttgccgccgttgctacgcttggtaa
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| Protein seq | MACKKGGIARDYNKKVDRILKKHSGTGMKKFEIEFYGPSNANTYYHLNNWLEIAITSGIEELTLRLTPDVTKYNFPCSLLSDGRGDLIQSLHLSHCSFRPTVEVVSLRSLTSLDLCLVRITDRELGILLSNSLVLEKLGIKYCDKINCLKIPCVLERLSSLEVFECYSLQMVESKAPNLCSFCFGGEQVQFSIGEPLQMKNLQVIFPNSISFGRAELPFSMPNLETLNISSRCEMSHTPTAPGKFLHLRYLSITFAGWRFSRAYDYFSLVSFLDASPLLETFILCILQKGKHDLTLRDPIYPRQMSERQHDSLKNVKINGFSSTKSLVELTCHILQNTTSLECLTLDTTRIEFRCSDSSVDVCLPSDRDAIKGAHKALLAIRTYIEGIVPATVKFSVLEPCRRCYAW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0008610 | OsKeNa_03g0008610.01 | Chr03 | 6211587 | 6213365 | + | NAM | ||
| CDS seq | atggcatgtaaaaagggtggaatagctagagattacaataaaaaagttgaccgcatactgaaaaaacactcaggcacaggaatgaagaaatttgagatcgaattctatggtccttcaaatgcaaacacctattatcatctcaataattggcttgagattgctattacatctggaattgaagaactcacccttaggttgactccagatgtgacaaagtacaacttcccttgctcacttttatctgatggaagaggggacttgattcagtctcttcacctttcccactgttccttccgtccaacagttgaggttgttagcttgagaagcctgacaagtttagatctatgtttggtgcgtattacggatagagagttaggaattctcctttccaattctttagttttggagaagttgggaatcaaatactgcgacaagattaattgcctgaagataccttgtgttctagagaggctcagttcactggaagtgtttgaatgttacagcctacaaatggtagagagcaaagctccaaatttatgcagtttttgctttggaggtgaacaggtacagttctcaattggagaaccgctgcaaatgaagaacctgcaagtgatcttccccaacagtatcagttttggccgtgctgaacttccatttagtatgcctaatcttgaaactcttaatatcagttcacgttgtgagatgtcccatacaccaactgcacctggcaaattccttcacctcagatacttgagtattacttttgcgggatggagattttcacgtgcctacgattatttttctcttgtttcttttcttgatgcttctcctttgttggagactttcatcctatgtattttacagaaaggaaagcatgacttaactttaagggatcctatatatccaaggcaaatgtctgaacgccagcatgacagcctaaagaatgtgaagatcaatggtttcagttccacaaaaagcttggttgagctaacatgccatattcttcagaacacaacttcgcttgagtgccttacattggacactactcgcattgagtttcggtgttctgatagtagtgttgatgtatgtctcccatcggacagggatgctatcaagggagcgcataaagcgctcttggctatcagaacatatattgagggtatagttcccgctacagtcaagttcagtgttctagagccttgccgccgttgctacgcttggtaa
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| Protein seq | MACKKGGIARDYNKKVDRILKKHSGTGMKKFEIEFYGPSNANTYYHLNNWLEIAITSGIEELTLRLTPDVTKYNFPCSLLSDGRGDLIQSLHLSHCSFRPTVEVVSLRSLTSLDLCLVRITDRELGILLSNSLVLEKLGIKYCDKINCLKIPCVLERLSSLEVFECYSLQMVESKAPNLCSFCFGGEQVQFSIGEPLQMKNLQVIFPNSISFGRAELPFSMPNLETLNISSRCEMSHTPTAPGKFLHLRYLSITFAGWRFSRAYDYFSLVSFLDASPLLETFILCILQKGKHDLTLRDPIYPRQMSERQHDSLKNVKINGFSSTKSLVELTCHILQNTTSLECLTLDTTRIEFRCSDSSVDVCLPSDRDAIKGAHKALLAIRTYIEGIVPATVKFSVLEPCRRCYAW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0008610 | OsKeNa_03g0008610.02 | Chr03 | 6211587 | 6213365 | + | NAM | ||
| CDS seq | atggcatgtaaaaagggtggaatagctagagattacaataaaaaagttgaccgcatactgaaaaaacactcaggcacaggaatgaagaaatttgagatcgaattctatggtccttcaaatgcaaacacctattatcatctcaataattggcttgagattgctattacatctggaattgaagaactcacccttaggttgactccagatgtgacaaagtacaacttcccttgctcacttttatctgatggaagaggggacttgattcagtctcttcacctttcccactgttccttccgtccaacagttgaggttgttagcttgagaagcctgacaagtttagatctatgtttggtgcgtattacggatagagagttaggaattctcctttccaattctttagttttggagaagttgggaatcaaatactgcgacaagattaattgcctgaagataccttgtgttctagagaggctcagttcactggaagtgtttgaatgttacagcctacaaatggtagagagcaaagctccaaatttatgcagtttttgctttggaggtgaacaggtacagttctcaattggagaaccgctgcaaatgaagaacctgcaagtgatcttccccaacagtatcagttttggccgtgctgaacttccatttagtatgcctaatcttgaaactcttaatatcagttcacgttgtgagatgtcccatacaccaactgcacctggcaaattccttcacctcagatacttgagtattacttttgcgggatggagattttcacgtgcctacgattatttttctcttgtttcttttcttgatgcttctcctttgttggagactttcatcctatgtgtgagttactattcattctgcaaggcatatttagtaactgtgccatttataatttattga
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| Protein seq | MACKKGGIARDYNKKVDRILKKHSGTGMKKFEIEFYGPSNANTYYHLNNWLEIAITSGIEELTLRLTPDVTKYNFPCSLLSDGRGDLIQSLHLSHCSFRPTVEVVSLRSLTSLDLCLVRITDRELGILLSNSLVLEKLGIKYCDKINCLKIPCVLERLSSLEVFECYSLQMVESKAPNLCSFCFGGEQVQFSIGEPLQMKNLQVIFPNSISFGRAELPFSMPNLETLNISSRCEMSHTPTAPGKFLHLRYLSITFAGWRFSRAYDYFSLVSFLDASPLLETFILCVSYYSFCKAYLVTVPFIIY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0008610 | OsKeNa_03g0008610.03 | Chr03 | 6206353 | 6213335 | + | IsoSeq | ||
| CDS seq | ccgctcggcgacgccgacgcgatttcctctcctcgcgccttactgaattcgaaacgaaattgtagatcatatagcagagagagagagagagagagagagagaggaagcagacgcggaccccttgatttctcggctagatctgagatatcatcgcatcatgggactgctggggttgaatcggctcatgtccatacagcgggagcagcgctgtcgccaaatcgaagccaatcgtcttcttgcatc
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| Protein seq | PLGDADAISSPRALLNSKRNCRSYSRERERERERGSRRGPLDFSARSEISSHHGTAGVESAHVHTAGAALSPNRSQSSSCI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 6212504 | 6213365 | + | OsKeNa_03g0008610.02 | OsKeNa_03g0008610.02,OsKeNa_03g0008610.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.150604 | 1.827492 | 3.580363 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0217200 | RBH | 2.097773 | 2.156729 | 3.133686 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g11790 | RBH | 1.337415 | 1.303719 | 0.737540 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0217200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0008650 | RBH | 1.298386 | 11.854047 | 5.039929 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0008690 | RBH | 1.528045 | 5.533074 | 6.702012 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0008700 | RBH | 0.227266 | 0.317457 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0008570 | RBH | 9.997514 | 9.784954 | 7.988313 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0103700 | RBH | 9.0326895 | 10.254118 | 7.7626205 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0008490 | RBH | 0.657099 | 1.029822 | 0.496451 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0103900 | RBH | 8.955285 | 12.9248685 | 15.6910565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0008550 | RBH | 0.439688 | 0.120191 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0008610 | RBH | 0.992254 | 7.083324 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0008590 | RBH | 5.514259 | 18.383450 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0008590 | RBH | 2.363873 | 0.282714 | 2.203368 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0008560 | RBH | 0.998725 | 3.251273 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G008580 | RBH | 0.922976 | 1.907063 | 1.294377 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0008450 | RBH | 3.329228 | 9.773459 | 6.473105 |
