Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0000840 | OGI:03001450 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:537008-538270 | ||||||||
| Gene Symbol | NAC55, ONAC055, ONAC55, OsNAC055 | ||||||||||
| DNA seq | tgcatgtagtgttcgattaattcttgagctcatatattacttattcatccaaatagtattggtagcttgttgatcgaagaattaatccatggatggattgatcagtgatgatagtatgatgatgggtggtgaggtgagggcgatcgagtcgaggctgcctccgggtttcaggttccatcccagcgacgaggagctagtcggctactaccttcggaacaagcagcagcagcagcagacggcggccacctccatgctcgtcgaggttgacctccatgcctgcgagccatgggacctaccaggtaatataatacttaccagttaatctactacgtacagtagtagactaattaattaattaattgataaactttgtgaaattggcatatactcctatatgtgtagaggtggcgaaggttggttcggatgagtggtatttcttcagccggagggagaggaagtacgcgacggggtggcgcaggaacagagcgagcaagcaagggtactggaaggccaccgggaaagacaagcccatccttcatccgacggtggccggcgccaggaagacgctggttttctactccggtcgcgcccccaacggccgcaagaccgcctgggtcatgcacgagttccgcctcctccatcatcatcatcatccaaacccaaatgtaattactcctaattatatcatatatatatatgcattatatatgtagctaattaatctgaatgtatgtacactgatctctgcatgcagattcagaatatgcagcagcatgagggggatgactgggtgctgtgcagggtgttccgtaaggggaacaacagcaatggacaacctctagccacttcttcgccacctgctcatcacctggtggagtcactcatcagctcacctgcaccaactatcacgagccatcacgatcggctcttcaacatccagctgccgcatcaccaacattgtgatgagcagtactttttcttagatgacgatgaacagtaccagcagcagctgctagatctttcagtgctccaagctccaacctcgttcgagtctgagcaagctccaggccacggtggcatggagattaatatcgcagagatggagagcttcgacacgacctgtgctgcgctgcaagacgcgagcgattactgcatgcaactctattaattaattcaatggatggatgaatcacacgtatatatacgcatagccttaaattaattaatgtgtatcatcagcttaattaattgcgcacttggctt
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| CDS seq | atggatggattgatcagtgatgatagtatgatgatgggtggtgaggtgagggcgatcgagtcgaggctgcctccgggtttcaggttccatcccagcgacgaggagctagtcggctactaccttcggaacaagcagcagcagcagcagacggcggccacctccatgctcgtcgaggttgacctccatgcctgcgagccatgggacctaccagaggtggcgaaggttggttcggatgagtggtatttcttcagccggagggagaggaagtacgcgacggggtggcgcaggaacagagcgagcaagcaagggtactggaaggccaccgggaaagacaagcccatccttcatccgacggtggccggcgccaggaagacgctggttttctactccggtcgcgcccccaacggccgcaagaccgcctgggtcatgcacgagttccgcctcctccatcatcatcatcatccaaacccaaatattcagaatatgcagcagcatgagggggatgactgggtgctgtgcagggtgttccgtaaggggaacaacagcaatggacaacctctagccacttcttcgccacctgctcatcacctggtggagtcactcatcagctcacctgcaccaactatcacgagccatcacgatcggctcttcaacatccagctgccgcatcaccaacattgtgatgagcagtactttttcttagatgacgatgaacagtaccagcagcagctgctagatctttcagtgctccaagctccaacctcgttcgagtctgagcaagctccaggccacggtggcatggagattaatatcgcagagatggagagcttcgacacgacctgtgctgcgctgcaagacgcgagcgattactgcatgcaactctattaa
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| Protein seq | MDGLISDDSMMMGGEVRAIESRLPPGFRFHPSDEELVGYYLRNKQQQQQTAATSMLVEVDLHACEPWDLPEVAKVGSDEWYFFSRRERKYATGWRRNRASKQGYWKATGKDKPILHPTVAGARKTLVFYSGRAPNGRKTAWVMHEFRLLHHHHHPNPNIQNMQQHEGDDWVLCRVFRKGNNSNGQPLATSSPPAHHLVESLISSPAPTITSHHDRLFNIQLPHHQHCDEQYFFLDDDEQYQQQLLDLSVLQAPTSFESEQAPGHGGMEINIAEMESFDTTCAALQDASDYCMQLY |
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| Function | NAC domain-containing protein 21/22 [UniProtKB/Swiss-Prot:Q84TE6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0000840 | OsLima_03g0000840.01 | Chr03 | 537008 | 538270 | + | NAM | ||
| CDS seq | atggatggattgatcagtgatgatagtatgatgatgggtggtgaggtgagggcgatcgagtcgaggctgcctccgggtttcaggttccatcccagcgacgaggagctagtcggctactaccttcggaacaagcagcagcagcagcagacggcggccacctccatgctcgtcgaggttgacctccatgcctgcgagccatgggacctaccagaggtggcgaaggttggttcggatgagtggtatttcttcagccggagggagaggaagtacgcgacggggtggcgcaggaacagagcgagcaagcaagggtactggaaggccaccgggaaagacaagcccatccttcatccgacggtggccggcgccaggaagacgctggttttctactccggtcgcgcccccaacggccgcaagaccgcctgggtcatgcacgagttccgcctcctccatcatcatcatcatccaaacccaaatattcagaatatgcagcagcatgagggggatgactgggtgctgtgcagggtgttccgtaaggggaacaacagcaatggacaacctctagccacttcttcgccacctgctcatcacctggtggagtcactcatcagctcacctgcaccaactatcacgagccatcacgatcggctcttcaacatccagctgccgcatcaccaacattgtgatgagcagtactttttcttagatgacgatgaacagtaccagcagcagctgctagatctttcagtgctccaagctccaacctcgttcgagtctgagcaagctccaggccacggtggcatggagattaatatcgcagagatggagagcttcgacacgacctgtgctgcgctgcaagacgcgagcgattactgcatgcaactctattaa
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| Protein seq | MDGLISDDSMMMGGEVRAIESRLPPGFRFHPSDEELVGYYLRNKQQQQQTAATSMLVEVDLHACEPWDLPEVAKVGSDEWYFFSRRERKYATGWRRNRASKQGYWKATGKDKPILHPTVAGARKTLVFYSGRAPNGRKTAWVMHEFRLLHHHHHPNPNIQNMQQHEGDDWVLCRVFRKGNNSNGQPLATSSPPAHHLVESLISSPAPTITSHHDRLFNIQLPHHQHCDEQYFFLDDDEQYQQQLLDLSVLQAPTSFESEQAPGHGGMEINIAEMESFDTTCAALQDASDYCMQLY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0109000 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g01870 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0109000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0000820 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0000800 | RBH | 0.0 | 0.0 | 1.119874 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0000820 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0000810 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0000810 | RBH | 0.0 | 0.0 | 3.385712 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0008500 | RBH | 0.0449015 | 0.015326 | 0.0123175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0000810 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0008300 | RBH | 0.023098 | 0 | 0.0898285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0014170 | SBH | 0.0 | 0.820664 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0000860 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0000810 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0000820 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0000830 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G000820 | RBH | 0.0 | 0.0 | 0.496979 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0000730 | RBH | 0.0 | 0.0 | 3.419961 |
