Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0036910 | OGI:02095980 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:36002580-36004423 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcactcggaagttataaacttcaacaaaaggaaacaacttaaaaggtaaaaggaataaacatgacaatgtaatgcagggctggccgttgggtgagaaccattaataatgtcgtcgctcggtcatgatgaaggagcagatggggaggtactacataatcatgcttgtttcgttgtttgcatataagcgacaactttatcaaggaatacctcggcctccttagcatcagcttcgcaactttctgcacacttcttgcttgtggcgggatcctccttatatactgcattacactcattgttgcaaaaatctatgaatctatccgcctttagatccttcactcccttatgggcctcaaatatagacttggtcttgatgaagcagaagtcttcacattgtttctcgtcgatGggggGCTTTCTTTTTCTGCTCACTGCATTCCTCTTTGCACCCAGCTCTCAGTGCCTCCTCTAGCGTCTCTGGCTCCTTTCCCATGACCGCCACAAGGGTGGCAAGGAGCAGGGCCACCGCAATGGTCTTGTTCTGGGCCATTAGTGCTGTTTTTCTTGAGTGTAATTGGTGTGGAACAAAGATGACTTCCCTTGCCCTGATGTCCCTATTATATAGTGCATAGATGAGAGTAAAGGAGCTATATAAATATGTGGCGGAGAGAGCTTCATGGGCCACCAATGGTGCTAATTATAGGCATAATTTTTGACGTAAGAAGGTAGAGCAGGCTCTACATTATAACCATTTCATTAATATAAATGAGGGGTTACATGATTTTTATCTTAACAAAAGAAAAGAAAGAAAGAAAGAGAGGAAAGAGGGGGGGTGGGGGCGGAGTTCTGTACAACAAAGGAATTTACAATTTAATTGGTTGCTACTAGCCTTTCACACCAGGACAAGAGCTTAGCCCTGGTTGTTTCTTGGCCTCGATGACTCCAGAGTTCAATGGATTTCCTGACTTGACACGAGAGAGAGAGAATTTTGCTACCCATCAAAGATCCTGGCGTTGCGTGCTTTCCATAGGGTCTGTGGGCAGGCCGCGAACCAGATTGGTTCAATGCCTCGTAGTGCCATGTTGTTCTTGATTATATCCTCTAGGAATGCTGTAATTGTTTCTGCTCTGTTAGAGAAGTGTAGAATTCCTAGCCTTTCCCACATGCAAGAGGTTGCTTGGCATCTTAAGATGATGTGGCTTGGCGGTCTCCAAGGCTGGGCAGAGGTCGCATTGTGGGTTGTTttttttttttttgagaaacacagtacaaacgcagacgcttacaacgtgcgcacacttacccctatgaacgcacacacgcacaccctatccctatgagcatctccaaaagactgagccggtatgtcttaagattgacgaagtctgtgggttgttgtttgccctggtgtttaatctgtctctgaatgccaaccaaagaaatagacgacagttttgagggatagctgagatccagatgaattcagccggtttccaaagtagcccatgattcgtcaaaatgtggtatgcatttgctgttgagatttttggcgctgggtgcaggaactgccttgtgtcgacagcatccggattgggttggagttgtagttctgtagctgcttgagaagacaagttggggtgcaattgtagatcccaagtattgtgctggaattgcgaggctactgtgcagtccttttccagggcaaaggagaagagggttgggtaagtttgttctaatctttcctgtgcccaattgtctttccaaaagaggcccaaggaaaccttgattgtctgaatgaggagctcaattttggatagaattagcttccaggttggcgtgtcattggt
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| CDS seq | ATGGCACTACGAGGCATTGAACCAATCTGGTTCGCGGCCTGCCCACAGACCCTATGGAAAGCACGCAACGCCAGGATCTTTGATGGGAAATCCATTGAACTCTGGAGTCATCGAGGCCAAGAAACAACCAGGGCTAAGCTCTTGTCCTGGTGTGAAAGGCTAGGACATCAGGGCAAGGGAAGTCATCTTTGTTCCACACCAATTACACTCAAGAAAAACAGCACTAATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGTGAGCAGAAAAAGAAAGCccccCatcgacgagaaacaatgtgaagacttctgcttcatcaagaccaagtctatatttgaggcccataagggagtgaaggatctaaaggcggatagattcatagatttttgcaacaatgagtgtaatgcagtatataaggaggatcccgccacaagcaagaagtgtgcagaaagttgcgaagctgatgctaaggaggccgagtttataacttccgagtga
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| Protein seq | MALRGIEPIWFAACPQTLWKARNARIFDGKSIELWSHRGQETTRAKLLSWCERLGHQGKGSHLCSTPITLKKNSTNGPEQDHCGGPAPCHPCGVSRKRKPPIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAESCEADAKEAEFITSE |
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| Function | Uncharacterized protein OsI_009113 [UniProtKB/Swiss-Prot:A2XAM0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0036910 | OsLima_02g0036910.01 | Chr02 | 36002580 | 36004423 | - | NAM | ||
| CDS seq | ATGGCACTACGAGGCATTGAACCAATCTGGTTCGCGGCCTGCCCACAGACCCTATGGAAAGCACGCAACGCCAGGATCTTTGATGGGAAATCCATTGAACTCTGGAGTCATCGAGGCCAAGAAACAACCAGGGCTAAGCTCTTGTCCTGGTGTGAAAGGCTAGGACATCAGGGCAAGGGAAGTCATCTTTGTTCCACACCAATTACACTCAAGAAAAACAGCACTAATGGCCCAGAACAAGACCATTGCGGTGGCCCTGCTCCTTGCCACCCTTGTGGCGTGAGCAGAAAAAGAAAGCccccCatcgacgagaaacaatgtgaagacttctgcttcatcaagaccaagtctatatttgaggcccataagggagtgaaggatctaaaggcggatagattcatagatttttgcaacaatgagtgtaatgcagtatataaggaggatcccgccacaagcaagaagtgtgcagaaagttgcgaagctgatgctaaggaggccgagtttataacttccgagtga
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| Protein seq | MALRGIEPIWFAACPQTLWKARNARIFDGKSIELWSHRGQETTRAKLLSWCERLGHQGKGSHLCSTPITLKKNSTNGPEQDHCGGPAPCHPCGVSRKRKPPIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAESCEADAKEAEFITSE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0798501 | SBH | 0.595122 | 0.348059 | 39.825649 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g55500 | SBH | 0.234854 | 0.076146 | 10.856363 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0798400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0037140 | SBH | 0.072179 | 0.0 | 26.687561 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0037240 | SBH | 0.0 | 0.0 | 49.483997 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0037060 | SBH | 0.0 | 0.0 | 100.399078 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0036690 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036880 | SBH | 0.0 | 0.0 | 81.681519 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0556800 | SBH | 0 | 0.0413635 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0036660 | SBH | 0.0 | 0.0 | 45.674889 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0587500 | SBH | 0 | 0 | 0.0309415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0036900 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036730 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036960 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036950 | SBH | 0.0 | 0.0 | 17.545317 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0036550 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G037150 | SBH | 0.0 | 0.0 | 10.796582 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036940 | SBH | 0.0 | 0.0 | 97.484192 |
