Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsLima_02g0030780 | OGI:02083130 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:31386969-31388118 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | caatggtattggtagttgatagtctataaagaaaataatctagtccaacttgctagatacaaccttctactgttctacatactagcacgagacaaactactgcatgcaccaaccaccaaacactgatccatttcaaccatcatgtccttgccaaccctggataagttctctgaaaattcgtttactaacttcaatttcttaatttgctaagagtagtagtactacctaagaaacaaggtgcaaaaaatacgacaaaaacaaagacatgaaaaggtagccggatagtaaatgctaatgaacaactactagatgatcaaagatattgagagaatcagagtgatgaccgtaaaaagaggtgccaacttctgaagagcatcaagctaagcttccataaactcttttacatggtactgatactgatcagtgatcactaatcactacgcacaccaaaggaagtaaaatAaaaaaaaaagaagaagaacagatcatcagaagcagagacctattactatgtcgcaggaaagcagaggaaggcggctggctaagctttggctccaaaagttcagagatttgctgcaagcctgcgagagagcgggtgtacgtgtcgatctccggctagtagccgccgccgccgccggcgttggccgcgagcttgatggacgacggcagcgggctgcgcagcggcgagcgcggcggcggcggctgctccaggcgccgcccctcggcgtcgtagtagatcacgccggagaagtccagcggctggcaccgctcccccatcagtatctccttcctccacaccccgtcctccgcgcggaagctcagctccgccccggccttcctcctcctcctcgacgacgagatagccttcttcccgccgcctccgccgcccaggaacggcacgatggcgcgcgacgagaacgacgccgcgatcccctcccgcggccgcaggtgcagccgccgcgccgcccgcgacagccgcctcgcgcacgtccccatcagcgccgccaccgcctgcgcgatgctcatccccatcgccgccgccgccgcctcctcctcctctcctcctcgcgctcttgcttcctcttcgagaccttgatggctagcttagcttctcttctcttctctcgcgcgcttctgcgtctccttctgc
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CDS seq | atggggatgagcatcgcgcaggcggtggcggcgctgatggggacgtgcgcgaggcggctgtcgcgggcggcgcggcggctgcacctgcggccgcgggaggggatcgcggcgtcgttctcgtcgcgcgccatcgtgccgttcctgggcggcggaggcggcgggaagaaggctatctcgtcgtcgaggaggaggaggaaggccggggcggagctgagcttccgcgcggaggacggggtgtggaggaaggagatactgatgggggagcggtgccagccgctggacttctccggcgtgatctactacgacgccgaggggcggcgcctggagcagccgccgccgccgcgctcgccgctgcgcagcccgctgccgtcgtccatcaagctcgcggccaacgccggcggcggcggcggctactag
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Protein seq | MGMSIAQAVAALMGTCARRLSRAARRLHLRPREGIAASFSSRAIVPFLGGGGGGKKAISSSRRRRKAGAELSFRAEDGVWRKEILMGERCQPLDFSGVIYYDAEGRRLEQPPPPRSPLRSPLPSSIKLAANAGGGGGY |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsLima_02g0030780 | OsLima_02g0030780.01 | Chr02 | 31386969 | 31388118 | - | NAM | ||
CDS seq | atggggatgagcatcgcgcaggcggtggcggcgctgatggggacgtgcgcgaggcggctgtcgcgggcggcgcggcggctgcacctgcggccgcgggaggggatcgcggcgtcgttctcgtcgcgcgccatcgtgccgttcctgggcggcggaggcggcgggaagaaggctatctcgtcgtcgaggaggaggaggaaggccggggcggagctgagcttccgcgcggaggacggggtgtggaggaaggagatactgatgggggagcggtgccagccgctggacttctccggcgtgatctactacgacgccgaggggcggcgcctggagcagccgccgccgccgcgctcgccgctgcgcagcccgctgccgtcgtccatcaagctcgcggccaacgccggcggcggcggcggctactag
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Protein seq | MGMSIAQAVAALMGTCARRLSRAARRLHLRPREGIAASFSSRAIVPFLGGGGGGKKAISSSRRRRKAGAELSFRAEDGVWRKEILMGERCQPLDFSGVIYYDAEGRRLEQPPPPRSPLRSPLPSSIKLAANAGGGGGY |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.144077 | 0.105660 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0711400 | RBH | 0.509347 | 0.0 | 1.484408 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g48150 | RBH | 0.286320 | 0.113543 | 0.261118 |
Nipponbare | IRGSP 1.0 | RAP-db | Os02g0711400 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0031000 | RBH | 0.0 | 0.0 | 2.291394 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031100 | RBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0030980 | RBH | 0.0 | 3.857486 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0030560 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0030720 | RBH | 1.795517 | 1.151630 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0480000 | RBH | 3.8781115 | 12.2534035 | 9.245122 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0030480 | RBH | 0.123697 | 0.913216 | 0.045018 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0508300 | RBH | 16.747757 | 26.1508915 | 12.77444 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0030550 | RBH | 0.199877 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0030910 | RBH | 0.0 | 14.440118 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0030750 | RBH | 0.308834 | 0.625566 | 0.276030 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0030360 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G031020 | RBH | 0.299684 | 0.0 | 0.695603 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0030790 | RBH | 1.264216 | 19.524496 | 0.922446 |