Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_02g0030560 | OGI:02083130 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr02:29351592-29352008 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGTAGCCGCCGCCGCCGCCGGCGTTGGCCGCGAGCTTGATGGACGACGGCAGCGGGCTGCGCAGCGGCGAGCGCGGCGGCGGCGGCTGCTCCAGGCGCCGCCCCTCGGCGTCGTAGTAGATCACGCCGGAGAAGTCCAGCGGCTGGCACCGCTCCCCCATCAGTATCTCCTTCCTCCACACCCCGTCCTCCGCGCGGAAGCTCAGCTCCGCCCCGGCCTTCCTCCTCCTCCTCGACGACGAGATAGCCTTCTTCCCGCCGCCTCCGCCGCCCAGGAACGGCACGATGGCGCGCGACGAGAACGACGCCGCGATCCCCTCCCGCGGCCGCAGGTGCAGCCGCCGCGCCGCCCGCGACAGCCGCCTCGCGCACGTCCCCATCAGCGCCGCCACCGCCTGCGCGATGCTCATCCCCAT
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| CDS seq | ATGGGGATGAGCATCGCGCAGGCGGTGGCGGCGCTGATGGGGACGTGCGCGAGGCGGCTGTCGCGGGCGGCGCGGCGGCTGCACCTGCGGCCGCGGGAGGGGATCGCGGCGTCGTTCTCGTCGCGCGCCATCGTGCCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGGAAGGCCGGGGCGGAGCTGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTGATGGGGGAGCGGTGCCAGCCGCTGGACTTCTCCGGCGTGATCTACTACGACGCCGAGGGGCGGCGCCTGGAGCAGCCGCCGCCGCCGCGCTCGCCGCTGCGCAGCCCGCTGCCGTCGTCCATCAAGCTCGCGGCCAACGCCGGCGGCGGCGGCGGCTACTAG
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| Protein seq | MGMSIAQAVAALMGTCARRLSRAARRLHLRPREGIAASFSSRAIVPFLGGGGGGKKAISSSRRRRKAGAELSFRAEDGVWRKEILMGERCQPLDFSGVIYYDAEGRRLEQPPPPRSPLRSPLPSSIKLAANAGGGGGY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_02g0030560 | OsARC_02g0030560.01 | Chr02 | 29351592 | 29352008 | - | NAM | ||
| CDS seq | ATGGGGATGAGCATCGCGCAGGCGGTGGCGGCGCTGATGGGGACGTGCGCGAGGCGGCTGTCGCGGGCGGCGCGGCGGCTGCACCTGCGGCCGCGGGAGGGGATCGCGGCGTCGTTCTCGTCGCGCGCCATCGTGCCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGGAAGGCCGGGGCGGAGCTGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTGATGGGGGAGCGGTGCCAGCCGCTGGACTTCTCCGGCGTGATCTACTACGACGCCGAGGGGCGGCGCCTGGAGCAGCCGCCGCCGCCGCGCTCGCCGCTGCGCAGCCCGCTGCCGTCGTCCATCAAGCTCGCGGCCAACGCCGGCGGCGGCGGCGGCTACTAG
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| Protein seq | MGMSIAQAVAALMGTCARRLSRAARRLHLRPREGIAASFSSRAIVPFLGGGGGGKKAISSSRRRRKAGAELSFRAEDGVWRKEILMGERCQPLDFSGVIYYDAEGRRLEQPPPPRSPLRSPLPSSIKLAANAGGGGGY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0711400 | RBH | 0.509347 | 0.0 | 1.484408 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g48150 | RBH | 0.286320 | 0.113543 | 0.261118 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0711400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0031000 | RBH | 0.0 | 0.0 | 2.291394 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031100 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0030980 | RBH | 0.0 | 3.857486 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013920 | RBH | 0.0 | 0.108034 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0030720 | RBH | 1.795517 | 1.151630 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0480000 | RBH | 3.8781115 | 12.2534035 | 9.245122 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0030480 | RBH | 0.123697 | 0.913216 | 0.045018 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0508300 | RBH | 16.747757 | 26.1508915 | 12.77444 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0030780 | RBH | 0.144077 | 0.105660 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0030550 | RBH | 0.199877 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0030910 | RBH | 0.0 | 14.440118 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0030750 | RBH | 0.308834 | 0.625566 | 0.276030 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0030360 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G031020 | RBH | 0.299684 | 0.0 | 0.695603 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0030790 | RBH | 1.264216 | 19.524496 | 0.922446 |
