Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0030210 | OGI:02081910 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:30863430-30872095 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtactggtctggtttgatttgatctgtctaaatcatcagaagtcacatgaaaagcatggcattctgaaagtaggggctgctcaacttctttttcccgctgggtttttgcagcaggcagaagcctccgctcgatgtataacaaataaaccaaaaacgaaaagaagaaaccaacagagaatgctacaattacagacccataccatacagttctatgagccggagcattgcgaagggatcaattagaggaatgcaacaaactgcaaaatcaacagcccgtaagcaatgcaaccaagagttgcaaatacaaactactaatgcaaccaattgaatggcattcctccagatccatactagaaaatccttccaaaatcctttcctgcaaaggaagacggcagtccgcctgctgtaaaagagtgaccaggccttcctcctgcacaacattcagaattatgtttcagacataaatatgcataccttctatggtttccaaatgcatgcaccgattgaaatgacttttaagctataataggttaataaagataaggcactcgtgaaaaaaaaatggaagatccaattggaaagcaaactatatcaacaggacatacatatctcatgcatgaaggttacaccttttcttttggccattgcagtcccatgtgcaattacaagcctagaccaaacatgtttcaatatactattaaacaaaatttgccaataaactatgtgtactgcaaggccattgttctgaaaattaataccaagattgcaagttttcagtagcacatttagttaagttggatacctcaaaaaaaaattagttaagttggactagaaggccatgccacatataaaaagaggaccacagatggtagtaaatctagtgctacgatagcttttgcagagtcaatggctataccaataacacccaattaaataaaacatacaaatgacaacatggaaatattaccccaaggcattccgtcagccatagtagcaggtggaggttctgccatgccataattaggccatacaggctgaccattgtgatgattccccattggacgtaggtagctggcagtcatatggttataccgctgaaatggttgtccatggcgactttgaaaattcagctgagaatagtttgcattatggtaaccatcataggtcacatggcctgtagaggcactagtctctgtaagagttgatgcatggaacaggtggtcacctctataggaaaagcatgaacaatgatcagttaataatactaaatataacaatatggaacccctgacaatatagcaccacccaagaaaattcaaaatattttcagtggtattactctcaataaagcaacacatagaaaacaagatttgtgtaaaagaagcacctcccttatccagttatcccttaagatgtttattgtcatgaaacaaactgttgcactgagaggcattacattttacaccccacagcgtctaataaacgtgtatgaaagctctttcgattctttgtacacatgccatccaaaatgacaaaatcatacccttacatatgtatataatcaaatccatttgttagcacattacaattttagcatttgtaaaaatggtgaataattaagcagaaaccagcagcacagcacaaggtgggaaaagtgaagtatgctttttttttcctaaagatatgagcgaactatacagagagcaactcattgtagttggattgtaagcaatctatcagatgaggggtgcctctattatattagctttttatgcgtcggccaaatgtcattacatgaacaaattagaaaacactgaagtacctttgattcatggataaagagtttgagtttgcaatagcatggctttggatatgggccaatctgctggattggtttgtttgaccacttgcatccttaaggtggagatcgctcaacgcatctgatagtgaagtgtcctcttgcagaagtgactcttcgctgcacatcaaaacaaagtgaaaaagatcaacacatgttacattacaaagacaaaactgtatgatgcactgttacctatagtttggatcccaatcagctggatccggtattgatgaggtggaagccagtgtatctgctgacacattggatgagtgcgaaggatgaaaaccaccgtatcgagatggtggaaaggacccatggttcgaagtgtctgttgataaaccactgccagcgcatgtatgtggtctccaactgaaatgaccaggattagggagtgcactttgtgggtaaccagaatgtccacgagcatagccatcaaagtgattactaatggtgccatccccatggtgtccctggatcagctgagatgtgtattcatgaggcggcattgatataggtgggtgaccaagatttcttcttctattgtattggcctacggcagcagcttttcccaatgagccatgactgctccttgcaggagaagtggaaccatactttcctgtagcagtacttgggatttgcatctgagaacttggtggagtaaattgtgatggacttgccccaagagacataggccctggacacccagggcttaatcgaatgccaccaccatgatagagataagatcgtcgtctaatatctggactagatcccaaaaatgttcctccggcttgtgaatgtaaattgaatccagaagggcctagtggtgaatgatacatgttcacactgttgacatcatagcttccatagctgcttgcaagacctacattgtcattaaagctaccatggctaccgaagctgccacagctgcttccatatgaaaagggaatctttggtgcaaaagcgttattaaatggtaggcctctgttaatgcttccaacctacaaacataatcaacaatatattatgataataattatcttacaactcaccaacttaacaaaagcataagagaacatacttacaacctgaggggaaagaccagcagctaaccagtgacctcctccaggattatgatcaactgctgcaacacgaccaacaggctacaatggcacaacacaacaagacataagtatatgacttacggactacttgtatgaaaaaaagggagcgcttaaggtacaagtattttaaggtttctccacattgtctactccctctgatttcagatatgtcaccattgactagtgcaattataattttgaccacaacaaattttgaatggtggagcatgacgcacaaaagttttgtgatatttagggtgcaacacacttcgttaatatgacatacttttaagtatttgtttttttcaaaaaagacgagctgtcaaagtttgaagatgaatagtacctagtgacaagtatttgaagacagagggagtagtatatagcaatatatagtctgttggtgggaagaaacactgtttcatgtatccatgtttgttataatgtgaaaggaagatatctaaatacctcgttcaattaaatgcagagcaaaaccaaagtcaattgttacaaatgatggtcgttccgtatcaacagtctctaaggagagaaaaattatacagcaggttgtctggaaacaagatcatacttacaattcttggagtctcctggataggctcatatggaccagtaaacgcttcaccagttatgaagggatgatatgaagcctgaaataggttcataattgtgaagtacttccattgattattcaagaagaaaaaaaaatagcgcaataggaaatcaagttaataatttcctaagtaccaaactgacctgcctaaagctcatttatttaacggctacgaaacaaggattccccagcatattcagatattgggattaataagacttcccattcacaatcaaagagtacaaccaaataggaatcaaatgttatcatcagtgaatacctgcaatggtgaccaccgcttattaggatcaaactcaacaagccctctcaagaaatcaaccagtgctaagcgatctgtcttttctgtctctgaatcaaaattgaaataggtgagaagataatgtcaaacctgcaacttcatcataaggactaggatattatcattcaagagactaatactaagaaataattctaagttcaccagtattattagtatcttgcatgattctggtatgtgccagcattgctaacctattattcatacacctgtttaataaagaactgcaaccggaaataaggtatagttaactaggttgatcatttcccaaaaggtaccgctatagtatgcaacactatcagttctataacaactactgcaacttcctgggcacccattataatttatgccacagtatagtcgtacaccaaaggcaataaaccttaaggcaatgcacaccaaatgaaccacgtattaagcaagaaacgctaattactgggtctgccatattgatcactgctagctgagattgttctagaataaacacagtttcaaaatcagctgtaaacctacttagctccatccttaaaaataagtatcacaaaacatacctggcaagttttccccattcaaattcttccaagggtatgtatatatgagtttgtcaagccttccacgagggaaataccatcttcctacttttggttttttggactccctctgtgttgcaggatgtaaacagggtatagataagtaataatgaagtaaatgtataggacaggacaaatatgtaaccttaaaaaaaataaaaatattacagtttcaatctcctcttcagttaatattctgtacgcactgatagggccattctgcatttcaataccaggataaatacttccaacttgcttaaaaaatctcccagtatttttagcctcccgtagcagatcatctggtggttgtccactgtataagaaaaaggcaaacaagtttaaaaacacttttgaatttccataaaagcaatgttgtaacatttctgaaaagttaagaacagaagtgaaagaactcagacagttacaaagtaattgaatataagttattttcactgtaaattgttggttgtaatgaagaaaagggagggaaaagttcaatcagatgtactaacccgagaatctcaatcatacggcataggacatcgtattctgacgctccaggaaataaaggcaatcctatatatagttcagcgactatacagccaaatgaccacatatcaatggccgtggtatatctagtacttgttaagtttacaaatccagatgttagaattcacaaaagctgcaccacataatgacaaatttaaaatggacataacagagaaaaacaaattaaaagcataagacatttgtgcagctttaaggtatttcctagtgaagaatagatgtcacacaggatacgggtaaccaagaagtacttccggagatctgtaataccgactctggaaaagaaaaaaaaaaggagaagcttctttaaatcaacaattttactataacatgaattcagagttcacactgatgggtgagtttgaatgaaacctgaatatacgagtaaatggttttaccctccaagcatgctgatccaaaatcaattactttaaccccagctgctgtttttacactgcaaagatatagcgtggatggattaatagcatgcaaacagtgaacaaatcaagtgctgatttgagatgagacaactaactttggagttatgagaatattttccggttttagatcacaatgaataatgccagcgtccttcatgacaaccaatgcatccaatatctgaccaataaagaattagacatagataatatggtaatcaatgcatttaaaattcaaaaattcaagcaccatatgaaaataaaaccttacctgtctagagaaagttcggacatatttcagttgcaaacctcttagactattcctttttagcagctcataactagatgtgggagtttaagtgatacatgaattagttacatggtatataatagattagcgaagagaagtacaacaatcttacaggttatggccaagcatttcaaatgctatacacaaatgattttggtagagaaaaaaatccagcatccggacaatgtggtgttgatcatcaggatcatatttctcattcagctgcaagattgagcatacacagttgtgatgccagtcgttacatacatcaatcacaaatgagtaaatgctaggtaaactactgtaccatgctcaacagtgagacctccatgatagcttgctgataaaaggcaggctgattttttataacctttactgcaacatagctgttagtttctccatcccagcatttagcaacctgtccaaacgtaccttggccaagcatttctttaataacgtacctacttagaacaataaaaagatgagtgcagtccaatctgatgctgttcatagtttaactttagaggtgttttacaatgctctctactggtagtagaaccaatctagatcattttttttctccaatagatcatatctatttacactaccatatcaactactggtagtataataatattttctactggtagtagaactcataaattaatagttgagatcacttctattggcaataatacttgtagtagaatactagagagcaccgtaaaggtactcttaactttaaccatcaggaactctgataaaaaaaaatatgaacacaaagttgaattgatcaattggatagctttatcgcctaagttcaataagttgaaaatttgaaagaaactacaatgtgtggcaatatggcagtcctttggacatatttcatcttcccatatttccacatctgagttcttagtataatggagagtcagaatgtgcatacatatttctaacttataacataaaaaacaaaatagtgaaaagagatatatctggtaaaaatgttttgagtgctctaactcactaagaaatggacaacagacacaaatattgaatcacataaaagggttaacaagtcaagaagaaaactaacctccggtccgactttttattaaccaattccaagttgacatacaagatgaggtcagaatttgcattatcaaggccatcattgtgagctggaactgaagggttggtgagaaagcgcttggggttcagtgaatctgagtacttaaactcaggattgcattttccgaaagtttggacaatgtctgtggttaatcttgcaacaaactgcaggaataagaaaatataatttagagtgaagcatcacaagtatatgaaggaggtgtcatacacagttgaacaattgtaacaaaaaaaatgtcacatagactgttccctcatcattttacaatataatacattcagaatatcaacaaagttgaaaattgtccctaaagtattgtgcttacccctggatgagatagcaaagttatgctgccaaaaaataaataccaatttaaaggaacatcttaacttagcaaaaagctaggatcctcaagtcaatttgagttgtgcaatgcctcccattcgctcatgaattatgatcaaagtaattaggaccgcctgtagcagtaaagtacctgttctagtgactatacgattagaagaacaagctaagcaaacaaatctagtgtacattaaacttaacagtgcattcgaatttagcagaaaacaggggtcggatttctggttagcaatgctgagagctttcagaaatgaagtttgtagctgaagaatcaatagaaaatctgagcaatcgaataatctagaccatgcgtgcaagcaataagaaaaaatggcagcaacaatgggtgatcatatgatacagctagttcaagcgaccagagtttaagctattggttccttgcaagcacctgatgctaatcgcattccagctaagtaaccatgtgcgaatagctcaatgcaattgacaattcagcaaagcgaggcctgaccgcagccgcatcaagcaagcatcttaggtagccctgtgagaaggggaaggtgcaggaaacgtacaggcctcttcctgacggagctgaggttgcttgagcgggcggcaagcccattgcgtcgaccggacaacgacgcccccgcccggtccccggccgccgcagcagcagcgaacggaaggaacgccgtggactcactcggcctccacggcggccccgccgcgtccacctcccaggaaacctccatacaccacacgcgcaaccgcctcccagcacccaatcgccgccgcccccgcggagatcaagtgcccaccaccaccacctcagcccaatccacctggctcccggctcccggctcccactaggatcacaccaacacgctcctccaaataagcggcaccagcagcagcagctaagcggccgccggcggagtccagctgcatcctaggcggcggtcatcgcccaatgctcccccctcccccgatccgatctcctccgcccctgcccgctcccgctcccgagcctccgccgggagctcgggaccccggtgaattgggcgcgcggggttttggggagagcacgagaagagacccactcctctacctcgccggattggcgaggggataggctgcggcggcggcggaggcggaggcggaggaggaggagtggggaatttggagaggggggcggcgagtcccaatcccctcctccctgtttcgtctcttctctcttccctttccttgctcgtctccgtcacacctccctctcgcctctttttcgctcccttttcc
More
|
||||||||||
| CDS seq | atggaggtttcctgggaggtggacgcggcggggccgccgtggaggccgagtgagtccacggcgttccttccgttcgctgctgctgcggcggccggggaccgggcgggggcgtcgttgtccggtcgacgcaatgggcttgccgcccgctcaagcaacctcagctccgtcaggaagaggccttttgttgcaagattaaccacagacattgtccaaactttcggaaaatgcaatcctgagtttaagtactcagattcactgaaccccaagcgctttctcaccaacccttcagttccagctcacaatgatggccttgataatgcaaattctgacctcatcttgtatgtcaacttggaattggttgctaaatgctgggatggagaaactaacagctatgttgcagtaaaggttataaaaaatcagcctgccttttatcagcaagctatcatggaggtctcactgttgagcatgctgaatgagaaatatgatcctgatgatcaacaccacattgtccggatgctggatttttttctctaccaaaatcatttgtgtatagcatttgaaatgcttggccataacctttatgagctgctaaaaaggaatagtctaagaggtttgcaactgaaatatgtccgaactttctctagacagatattggatgcattggttgtcatgaaggacgctggcattattcattgtgatctaaaaccggaaaatattctcataactccaaatgtaaaaacagcagctggggttaaagtaattgattttggatcagcatgcttggaggagtcggtattacagatctccggaaaatacgatgtcctatgccgtatgattgagattctcggtggacaaccaccagatgatctgctacgggaggctaaaaatactgggagattttttaagcaagttggaagtatttatcctggtattgaaatgcagaatggccctatcagtgcgtacagaatattaactgaagaggagattgaaactagggagtccaaaaaaccaaaagtaggaagatggtatttccctcgtggaaggcttgacaaactcatatatacatacccttggaagaatttgaatggggaaaacttgccagagacagaaaagacagatcgcttagcactggttgatttcttgagagggcttgttgagtttgatcctaataagcggtggtcaccattgcaggcttcatatcatcccttcataactggtgaagcgtttactggtccatatgagcctatccaggagactccaagaattcctgttggtcgtgttgcagcagttgatcataatcctggaggaggtcactggttagctgctggtctttcccctcaggttgttggaagcattaacagaggcctaccatttaataacgcttttgcaccaaagattcccttttcatatggaagcagctgtggcagcttcggtagccatggtagctttaatgacaatgtaggtcttgcaagcagctatggaagctatgatgtcaacagtgtgaacatgtatcattcaccactaggcccttctggattcaatttacattcacaagccggaggaacatttttgggatctagtccagatattagacgacgatcttatctctatcatggtggtggcattcgattaagccctgggtgtccagggcctatgtctcttggggcaagtccatcacaatttactccaccaagttctcagatgcaaatcccaagtactgctacaggaaagtatggttccacttctcctgcaaggagcagtcatggctcattgggaaaagctgctgccgtaggccaatacaatagaagaagaaatcttggtcacccacctatatcaatgccgcctcatgaatacacatctcagctgatccagggacaccatggggatggcaccattagtaatcactttgatggctatgctcgtggacattctggttacccacaaagtgcactccctaatcctggtcatttcagttggagaccacatacatgcgctggcagtggtttatcaacagacacttcgaaccatgggtcctttccaccatctcgatacggtggttttcatccttcgcactcatccaatgtgtcagcagatacactggcttccacctcatcaataccggatccagctgattgggatccaaactatagcgaagagtcacttctgcaagaggacacttcactatcagatgcgttgagcgatctccaccttaaggatgcaagtggtcaaacaaaccaatccagcagattggcccatatccaaagccatgctattgcaaactcaaactctttatccatgaatcaaagaggtgaccacctgttccatgcatcaactcttacagagactagtgcctctacaggccatgtgacctatgatggttaccataatgcaaactattctcagctgaattttcaaagtcgccatggacaaccatttcagcggtataaccatatgactgccagctacctacgtccaatggggaatcatcacaatggtcagcctgtatggcctaattatggcatggcagaacctccacctgctactatggctgacggaatgccttggggaggaaggcctggtcactcttttacagcaggcggactgccgtcttcctttgcaggaaaggattttggaaggattttctag
More
|
||||||||||
| Protein seq | MEVSWEVDAAGPPWRPSESTAFLPFAAAAAAGDRAGASLSGRRNGLAARSSNLSSVRKRPFVARLTTDIVQTFGKCNPEFKYSDSLNPKRFLTNPSVPAHNDGLDNANSDLILYVNLELVAKCWDGETNSYVAVKVIKNQPAFYQQAIMEVSLLSMLNEKYDPDDQHHIVRMLDFFLYQNHLCIAFEMLGHNLYELLKRNSLRGLQLKYVRTFSRQILDALVVMKDAGIIHCDLKPENILITPNVKTAAGVKVIDFGSACLEESVLQISGKYDVLCRMIEILGGQPPDDLLREAKNTGRFFKQVGSIYPGIEMQNGPISAYRILTEEEIETRESKKPKVGRWYFPRGRLDKLIYTYPWKNLNGENLPETEKTDRLALVDFLRGLVEFDPNKRWSPLQASYHPFITGEAFTGPYEPIQETPRIPVGRVAAVDHNPGGGHWLAAGLSPQVVGSINRGLPFNNAFAPKIPFSYGSSCGSFGSHGSFNDNVGLASSYGSYDVNSVNMYHSPLGPSGFNLHSQAGGTFLGSSPDIRRRSYLYHGGGIRLSPGCPGPMSLGASPSQFTPPSSQMQIPSTATGKYGSTSPARSSHGSLGKAAAVGQYNRRRNLGHPPISMPPHEYTSQLIQGHHGDGTISNHFDGYARGHSGYPQSALPNPGHFSWRPHTCAGSGLSTDTSNHGSFPPSRYGGFHPSHSSNVSADTLASTSSIPDPADWDPNYSEESLLQEDTSLSDALSDLHLKDASGQTNQSSRLAHIQSHAIANSNSLSMNQRGDHLFHASTLTETSASTGHVTYDGYHNANYSQLNFQSRHGQPFQRYNHMTASYLRPMGNHHNGQPVWPNYGMAEPPPATMADGMPWGGRPGHSFTAGGLPSSFAGKDFGRIF |
||||||||||
| Function | Dual specificity protein kinase YAK1 homolog [UniProtKB/Swiss-Prot:Q8RWH3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0030210 | OsLima_02g0030210.02 | Chr02 | 30863430 | 30871511 | - | NAM | ||
| CDS seq | atgcttggccaaggtacgtttggacaggttgctaaatgctgggatggagaaactaacagctatgttgcagtaaaggttataaaaaatcagcctgccttttatcagcaagctatcatggaggtctcactgttgagcatgctgaatgagaaatatgatcctgatgatcaacaccacattgtccggatgctggatttttttctctaccaaaatcatttgtgtatagcatttgaaatgcttggccataacctttatgagctgctaaaaaggaatagtctaagaggtttgcaactgaaatatgtccgaactttctctagacagatattggatgcattggttgtcatgaaggacgctggcattattcattgtgatctaaaaccggaaaatattctcataactccaaatgtaaaaacagcagctggggttaaagtaattgattttggatcagcatgcttggagggtaaaaccatttactcgtatattcagagtcggtattacagatctccggaagtacttcttggttacccatataccacggccattgatatgtggtcatttggctgtatagtcgctgaactatatataggattgcctttatttcctggagcgtcagaatacgatgtcctatgccgtatgattgagattctcggtggacaaccaccagatgatctgctacgggaggctaaaaatactgggagattttttaagcaagttggaagtatttatcctggtattgaaatgcagaatggccctatcagtgcgtacagaatattaactgaagaggagattgaaactagggagtccaaaaaaccaaaagtaggaagatggtatttccctcgtggaaggcttgacaaactcatatatacatacccttggaagaatttgaatggggaaaacttgccagagacagaaaagacagatcgcttagcactggttgatttcttgagagggcttgttgagtttgatcctaataagcggtggtcaccattgcaggcttcatatcatcccttcataactggtgaagcgtttactggtccatatgagcctatccaggagactccaagaattcctgttggtcgtgttgcagcagttgatcataatcctggaggaggtcactggttagctgctggtctttcccctcaggttgttggaagcattaacagaggcctaccatttaataacgcttttgcaccaaagattcccttttcatatggaagcagctgtggcagcttcggtagccatggtagctttaatgacaatgtaggtcttgcaagcagctatggaagctatgatgtcaacagtgtgaacatgtatcattcaccactaggcccttctggattcaatttacattcacaagccggaggaacatttttgggatctagtccagatattagacgacgatcttatctctatcatggtggtggcattcgattaagccctgggtgtccagggcctatgtctcttggggcaagtccatcacaatttactccaccaagttctcagatgcaaatcccaagtactgctacaggaaagtatggttccacttctcctgcaaggagcagtcatggctcattgggaaaagctgctgccgtaggccaatacaatagaagaagaaatcttggtcacccacctatatcaatgccgcctcatgaatacacatctcagctgatccagggacaccatggggatggcaccattagtaatcactttgatggctatgctcgtggacattctggttacccacaaagtgcactccctaatcctggtcatttcagttggagaccacatacatgcgctggcagtggtttatcaacagacacttcgaaccatgggtcctttccaccatctcgatacggtggttttcatccttcgcactcatccaatgtgtcagcagatacactggcttccacctcatcaataccggatccagctgattgggatccaaactatagcgaagagtcacttctgcaagaggacacttcactatcagatgcgttgagcgatctccaccttaaggatgcaagtggtcaaacaaaccaatccagcagattggcccatatccaaagccatgctattgcaaactcaaactctttatccatgaatcaaagaggtgaccacctgttccatgcatcaactcttacagagactagtgcctctacaggccatgtgacctatgatggttaccataatgcaaactattctcagctgaattttcaaagtcgccatggacaaccatttcagcggtataaccatatgactgccagctacctacgtccaatggggaatcatcacaatggtcagcctgtatggcctaattatggcatggcagaacctccacctgctactatggctgacggaatgccttggggaggaaggcctggtcactcttttacagcaggcggactgccgtcttcctttgcaggaaaggattttggaaggattttctag
More
|
|||||||
| Protein seq | MLGQGTFGQVAKCWDGETNSYVAVKVIKNQPAFYQQAIMEVSLLSMLNEKYDPDDQHHIVRMLDFFLYQNHLCIAFEMLGHNLYELLKRNSLRGLQLKYVRTFSRQILDALVVMKDAGIIHCDLKPENILITPNVKTAAGVKVIDFGSACLEGKTIYSYIQSRYYRSPEVLLGYPYTTAIDMWSFGCIVAELYIGLPLFPGASEYDVLCRMIEILGGQPPDDLLREAKNTGRFFKQVGSIYPGIEMQNGPISAYRILTEEEIETRESKKPKVGRWYFPRGRLDKLIYTYPWKNLNGENLPETEKTDRLALVDFLRGLVEFDPNKRWSPLQASYHPFITGEAFTGPYEPIQETPRIPVGRVAAVDHNPGGGHWLAAGLSPQVVGSINRGLPFNNAFAPKIPFSYGSSCGSFGSHGSFNDNVGLASSYGSYDVNSVNMYHSPLGPSGFNLHSQAGGTFLGSSPDIRRRSYLYHGGGIRLSPGCPGPMSLGASPSQFTPPSSQMQIPSTATGKYGSTSPARSSHGSLGKAAAVGQYNRRRNLGHPPISMPPHEYTSQLIQGHHGDGTISNHFDGYARGHSGYPQSALPNPGHFSWRPHTCAGSGLSTDTSNHGSFPPSRYGGFHPSHSSNVSADTLASTSSIPDPADWDPNYSEESLLQEDTSLSDALSDLHLKDASGQTNQSSRLAHIQSHAIANSNSLSMNQRGDHLFHASTLTETSASTGHVTYDGYHNANYSQLNFQSRHGQPFQRYNHMTASYLRPMGNHHNGQPVWPNYGMAEPPPATMADGMPWGGRPGHSFTAGGLPSSFAGKDFGRIF
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0030210 | OsLima_02g0030210.01 | Chr02 | 30863473 | 30872095 | - | NAM | ||
| CDS seq | atggaggtttcctgggaggtggacgcggcggggccgccgtggaggccgagtgagtccacggcgttccttccgttcgctgctgctgcggcggccggggaccgggcgggggcgtcgttgtccggtcgacgcaatgggcttgccgcccgctcaagcaacctcagctccgtcaggaagaggccttttgttgcaagattaaccacagacattgtccaaactttcggaaaatgcaatcctgagtttaagtactcagattcactgaaccccaagcgctttctcaccaacccttcagttccagctcacaatgatggccttgataatgcaaattctgacctcatcttgtatgtcaacttggaattggttgctaaatgctgggatggagaaactaacagctatgttgcagtaaaggttataaaaaatcagcctgccttttatcagcaagctatcatggaggtctcactgttgagcatgctgaatgagaaatatgatcctgatgatcaacaccacattgtccggatgctggatttttttctctaccaaaatcatttgtgtatagcatttgaaatgcttggccataacctttatgagctgctaaaaaggaatagtctaagaggtttgcaactgaaatatgtccgaactttctctagacagatattggatgcattggttgtcatgaaggacgctggcattattcattgtgatctaaaaccggaaaatattctcataactccaaatgtaaaaacagcagctggggttaaagtaattgattttggatcagcatgcttggaggagtcggtattacagatctccggaaaatacgatgtcctatgccgtatgattgagattctcggtggacaaccaccagatgatctgctacgggaggctaaaaatactgggagattttttaagcaagttggaagtatttatcctggtattgaaatgcagaatggccctatcagtgcgtacagaatattaactgaagaggagattgaaactagggagtccaaaaaaccaaaagtaggaagatggtatttccctcgtggaaggcttgacaaactcatatatacatacccttggaagaatttgaatggggaaaacttgccagagacagaaaagacagatcgcttagcactggttgatttcttgagagggcttgttgagtttgatcctaataagcggtggtcaccattgcaggcttcatatcatcccttcataactggtgaagcgtttactggtccatatgagcctatccaggagactccaagaattcctgttggtcgtgttgcagcagttgatcataatcctggaggaggtcactggttagctgctggtctttcccctcaggttgttggaagcattaacagaggcctaccatttaataacgcttttgcaccaaagattcccttttcatatggaagcagctgtggcagcttcggtagccatggtagctttaatgacaatgtaggtcttgcaagcagctatggaagctatgatgtcaacagtgtgaacatgtatcattcaccactaggcccttctggattcaatttacattcacaagccggaggaacatttttgggatctagtccagatattagacgacgatcttatctctatcatggtggtggcattcgattaagccctgggtgtccagggcctatgtctcttggggcaagtccatcacaatttactccaccaagttctcagatgcaaatcccaagtactgctacaggaaagtatggttccacttctcctgcaaggagcagtcatggctcattgggaaaagctgctgccgtaggccaatacaatagaagaagaaatcttggtcacccacctatatcaatgccgcctcatgaatacacatctcagctgatccagggacaccatggggatggcaccattagtaatcactttgatggctatgctcgtggacattctggttacccacaaagtgcactccctaatcctggtcatttcagttggagaccacatacatgcgctggcagtggtttatcaacagacacttcgaaccatgggtcctttccaccatctcgatacggtggttttcatccttcgcactcatccaatgtgtcagcagatacactggcttccacctcatcaataccggatccagctgattgggatccaaactatagcgaagagtcacttctgcaagaggacacttcactatcagatgcgttgagcgatctccaccttaaggatgcaagtggtcaaacaaaccaatccagcagattggcccatatccaaagccatgctattgcaaactcaaactctttatccatgaatcaaagaggtgaccacctgttccatgcatcaactcttacagagactagtgcctctacaggccatgtgacctatgatggttaccataatgcaaactattctcagctgaattttcaaagtcgccatggacaaccatttcagcggtataaccatatgactgccagctacctacgtccaatggggaatcatcacaatggtcagcctgtatggcctaattatggcatggcagaacctccacctgctactatggctgacggaatgccttggggaggaaggcctggtcactcttttacagcaggcggactgccgtcttcctttgcaggaaaggattttggaaggattttctag
More
|
|||||||
| Protein seq | MEVSWEVDAAGPPWRPSESTAFLPFAAAAAAGDRAGASLSGRRNGLAARSSNLSSVRKRPFVARLTTDIVQTFGKCNPEFKYSDSLNPKRFLTNPSVPAHNDGLDNANSDLILYVNLELVAKCWDGETNSYVAVKVIKNQPAFYQQAIMEVSLLSMLNEKYDPDDQHHIVRMLDFFLYQNHLCIAFEMLGHNLYELLKRNSLRGLQLKYVRTFSRQILDALVVMKDAGIIHCDLKPENILITPNVKTAAGVKVIDFGSACLEESVLQISGKYDVLCRMIEILGGQPPDDLLREAKNTGRFFKQVGSIYPGIEMQNGPISAYRILTEEEIETRESKKPKVGRWYFPRGRLDKLIYTYPWKNLNGENLPETEKTDRLALVDFLRGLVEFDPNKRWSPLQASYHPFITGEAFTGPYEPIQETPRIPVGRVAAVDHNPGGGHWLAAGLSPQVVGSINRGLPFNNAFAPKIPFSYGSSCGSFGSHGSFNDNVGLASSYGSYDVNSVNMYHSPLGPSGFNLHSQAGGTFLGSSPDIRRRSYLYHGGGIRLSPGCPGPMSLGASPSQFTPPSSQMQIPSTATGKYGSTSPARSSHGSLGKAAAVGQYNRRRNLGHPPISMPPHEYTSQLIQGHHGDGTISNHFDGYARGHSGYPQSALPNPGHFSWRPHTCAGSGLSTDTSNHGSFPPSRYGGFHPSHSSNVSADTLASTSSIPDPADWDPNYSEESLLQEDTSLSDALSDLHLKDASGQTNQSSRLAHIQSHAIANSNSLSMNQRGDHLFHASTLTETSASTGHVTYDGYHNANYSQLNFQSRHGQPFQRYNHMTASYLRPMGNHHNGQPVWPNYGMAEPPPATMADGMPWGGRPGHSFTAGGLPSSFAGKDFGRIF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 30868811 | 30868935 | - | OsLima_02g0030210.02 | OsLima_02g0030210.02,OsLima_02g0030210.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.535488 | 0.581497 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0702500 | RBH | 3.720476 | 4.216790 | 13.578030 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g47410 | RBH | 1.581101 | 2.654486 | 1.916073 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0702500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0030360 | RBH | 1.157928 | 36.060303 | 14.000238 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0030450 | RBH | 0.582832 | 6.248534 | 6.404053 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0030340 | RBH | 2.759409 | 26.297054 | 19.480936 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0029900 | RBH | 0.404250 | 0.737670 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0030120 | RBH | 8.595070 | 25.236368 | 35.179688 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0472800 | RBH | 11.6157415 | 42.0196745 | 27.314331 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029900 | RBH | 0.893826 | 1.897837 | 2.846925 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0499900 | RBH | 13.886797 | 38.706154 | 31.935465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0025260 | RBH | 0.636618 | 0.632942 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0029970 | RBH | 0.830494 | 20.802877 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0030290 | RBH | 7.059385 | 44.276962 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0030140 | RBH | 1.671715 | 4.725190 | 4.294763 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0029790 | RBH | 0.877277 | 18.237299 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G030380 | RBH | 0.766617 | 7.153334 | 6.368319 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0030140 | RBH | 3.593999 | 50.139019 | 16.074156 |
