Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0029040 | OGI:02078760 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:29783868-29785312 | ||||||||
| Gene Symbol | RAV6 | ||||||||||
| DNA seq | cttctcaaaccaacagaaaaattccaattaagtggccaacaaaacaaaaatgtcaaatcctaatgctgtcatcaaatttcaggttataatggaatcacaagagaaagtgagatcgatgttgctgcgagaagaagaacaaaccaaatcaaaacagaagaagaaaaaagaatcgttgatgaactttcctttgtttttctctctttaggtcgctacagatcgagatccaaggccgaatgcgcgtccctcttggaggaagacgacgacgacggagacgatgcagcggacgactcggcgccatggtggtggtgaggaggcaattccagcagccgcagtgttggatccctcctcatccacgcgggcgtctgcaatgacagtgcattgccatgattgctcgactcgccggcggcggcggcgccgccgccgccggcatgcgggttgtcgaggttcacgccgaacagccttacgcgcttcgcggccgtcgtggggctctcgatgaccggaaccgagtcgagcaccaccggtgagcccgccgcccttacaccatcgccgctcggctgcagcgtgtagtggtggtgcagcggcgacggcgcgcgcgccagcagtggtgcttgcggaggaatcctcgccgagccgaacaggaggacctgcctccccatcgcggcggcggggttgaaggcgcggaagtcgaggccttgcctgaggcggtgctcgtagagcgtggccggcggcgagggcggcacgaagaatccccctccgccgccgatcccccacggggcgtagtgcgacgtgagcggcatcgggagcggcagcccgcggggcagccggagcgggtcgcgggtgtcggcgcggcgcttccagtcgatgaagaggcggtgccgcgccgcctcgtcgccgatgccgcgggagaaggagacggtgtccccggcgtcgaggcgcttctccttgacgaagcggctccaccccttggtcatcacgtagctctggctgctgttccagtaggagtagcggaaccgccatggcttccccgcgcggtcctcgaagttgagcaggaggcccttctcgttcgccgccgcgtccagcgggaagtacttctcggcgtactgcttcgggatcaccagccggttcagcttcccgacgtcgctcggcgtcaccaccttgtcgaacatgtgctccttctccaccacctccgcttctccgccgccgccgccgccgccgctcccagacgccccggcgccatcgtcggagcgaaagggagtgctgctccctgacgcagacgccgacgccgacgcggaagccgcgtgatgagcaggagacgacgacgacgacgtgggcgcaggcgcggcttcggccgtggccgtcatgaaggggatctctcgccttcccgcctcatcctgctcctcgtcctcctcttctttagaaaacctactgcttgtagtgaactccat
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| CDS seq | atggagttcactacaagcagtaggttttctaaagaagaggaggacgaggagcaggatgaggcgggaaggcgagagatccccttcatgacggccacggccgaagccgcgcctgcgcccacgtcgtcgtcgtcgtctcctgctcatcacgcggcttccgcgtcggcgtcggcgtctgcgtcagggagcagcactccctttcgctccgacgatggcgccggggcgtctgggagcggcggcggcggcggcggcggagaagcggaggtggtggagaaggagcacatgttcgacaaggtggtgacgccgagcgacgtcgggaagctgaaccggctggtgatcccgaagcagtacgccgagaagtacttcccgctggacgcggcggcgaacgagaagggcctcctgctcaacttcgaggaccgcgcggggaagccatggcggttccgctactcctactggaacagcagccagagctacgtgatgaccaaggggtggagccgcttcgtcaaggagaagcgcctcgacgccggggacaccgtctccttctcccgcggcatcggcgacgaggcggcgcggcaccgcctcttcatcgactggaagcgccgcgccgacacccgcgacccgctccggctgccccgcgggctgccgctcccgatgccgctcacgtcgcactacgccccgtgggggatcggcggcggagggggattcttcgtgccgccctcgccgccggccacgctctacgagcaccgcctcaggcaaggcctcgacttccgcgccttcaaccccgccgccgcgatggggaggcaggtcctcctgttcggctcggcgaggattcctccgcaagcaccactgctggcgcgcgcgccgtcgccgctgcaccaccactacacgctgcagccgagcggcgatggtgtaagggcggcgggctcaccggtggtgctcgactcggttccggtcatcgagagccccacgacggccgcgaagcgcgtaaggctgttcggcgtgaacctcgacaacccgcatgccggcggcggcggcgccgccgccgccggcgagtcgagcaatcatggcaatgcactgtcattgcagacgcccgcgtggatgaggagggatccaacactgcggctgctggaattgcctcctcaccaccaccatggcgccgagtcgtccgctgcatcgtctccgtcgtcgtcgtcttcctccaagagggacgcgcattcggccttggatctcgatctgtag
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| Protein seq | MEFTTSSRFSKEEEDEEQDEAGRREIPFMTATAEAAPAPTSSSSSPAHHAASASASASASGSSTPFRSDDGAGASGSGGGGGGGEAEVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHRLFIDWKRRADTRDPLRLPRGLPLPMPLTSHYAPWGIGGGGGFFVPPSPPATLYEHRLRQGLDFRAFNPAAAMGRQVLLFGSARIPPQAPLLARAPSPLHHHYTLQPSGDGVRAAGSPVVLDSVPVIESPTTAAKRVRLFGVNLDNPHAGGGGAAAAGESSNHGNALSLQTPAWMRRDPTLRLLELPPHHHHGAESSAASSPSSSSSSKRDAHSALDLDL |
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| Function | B3 domain-containing protein Os02g0683500 [UniProtKB/Swiss-Prot:Q6EU30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0029040 | OsLima_02g0029040.01 | Chr02 | 29783868 | 29785312 | - | NAM | ||
| CDS seq | atggagttcactacaagcagtaggttttctaaagaagaggaggacgaggagcaggatgaggcgggaaggcgagagatccccttcatgacggccacggccgaagccgcgcctgcgcccacgtcgtcgtcgtcgtctcctgctcatcacgcggcttccgcgtcggcgtcggcgtctgcgtcagggagcagcactccctttcgctccgacgatggcgccggggcgtctgggagcggcggcggcggcggcggcggagaagcggaggtggtggagaaggagcacatgttcgacaaggtggtgacgccgagcgacgtcgggaagctgaaccggctggtgatcccgaagcagtacgccgagaagtacttcccgctggacgcggcggcgaacgagaagggcctcctgctcaacttcgaggaccgcgcggggaagccatggcggttccgctactcctactggaacagcagccagagctacgtgatgaccaaggggtggagccgcttcgtcaaggagaagcgcctcgacgccggggacaccgtctccttctcccgcggcatcggcgacgaggcggcgcggcaccgcctcttcatcgactggaagcgccgcgccgacacccgcgacccgctccggctgccccgcgggctgccgctcccgatgccgctcacgtcgcactacgccccgtgggggatcggcggcggagggggattcttcgtgccgccctcgccgccggccacgctctacgagcaccgcctcaggcaaggcctcgacttccgcgccttcaaccccgccgccgcgatggggaggcaggtcctcctgttcggctcggcgaggattcctccgcaagcaccactgctggcgcgcgcgccgtcgccgctgcaccaccactacacgctgcagccgagcggcgatggtgtaagggcggcgggctcaccggtggtgctcgactcggttccggtcatcgagagccccacgacggccgcgaagcgcgtaaggctgttcggcgtgaacctcgacaacccgcatgccggcggcggcggcgccgccgccgccggcgagtcgagcaatcatggcaatgcactgtcattgcagacgcccgcgtggatgaggagggatccaacactgcggctgctggaattgcctcctcaccaccaccatggcgccgagtcgtccgctgcatcgtctccgtcgtcgtcgtcttcctccaagagggacgcgcattcggccttggatctcgatctgtag
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| Protein seq | MEFTTSSRFSKEEEDEEQDEAGRREIPFMTATAEAAPAPTSSSSSPAHHAASASASASASGSSTPFRSDDGAGASGSGGGGGGGEAEVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHRLFIDWKRRADTRDPLRLPRGLPLPMPLTSHYAPWGIGGGGGFFVPPSPPATLYEHRLRQGLDFRAFNPAAAMGRQVLLFGSARIPPQAPLLARAPSPLHHHYTLQPSGDGVRAAGSPVVLDSVPVIESPTTAAKRVRLFGVNLDNPHAGGGGAAAAGESSNHGNALSLQTPAWMRRDPTLRLLELPPHHHHGAESSAASSPSSSSSSKRDAHSALDLDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0683500 | RBH | 0.0 | 0.193105 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45850 | RBH | 0.0 | 0.129879 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0683500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029210 | RBH | 0.118165 | 0.0 | 0.656982 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029270 | RBH | 0.0 | 0.0 | 0.264107 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029140 | RBH | 0.185872 | 0.769843 | 0.457251 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028910 | RBH | 0.0 | 0.0 | 1.337038 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0454000 | RBH | 0.854802 | 0.7539325 | 1.3799355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028710 | RBH | 0.066959 | 0.166503 | 0.127936 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0481800 | RBH | 0.580335 | 0.3979945 | 6.0066625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0023850 | RBH | 0.0 | 0.282279 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029060 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028930 | RBH | 0.0 | 0.0 | 0.147182 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028610 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029180 | RBH | 0.0 | 0.615522 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028950 | RBH | 0.0 | 2.373336 | 1.482090 |
