Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsIR64_02g0028710 OGI:02078760 | 16/16 IR 64 | OsIR64RS1 | Gramene(+IsoSeq) Chr02:29129729-29131173
Gene Symbol RAV6
DNA seq

CTTCTCAAACCAACAGAAAAATTCCAATTAAGTGGCCAACAAAACAAAAATGTCAAATCCTAATGCTGTCATCAAATTTCAGGTTATAATGGAATCACAAGAGAAAGTGAGATCGATGTTGCTGCGAGAAGAAGAACAAACCAAATCAAAACAGAAGAAGAAAAAAGAATCGTTGATGAACTTTCCTTTGTTTTTCTCTCTTTAGGTCGCTACAGATCGAGATCCAAGGCCGAATGCGCGTCCCTCTTGGAGGAAGACGACGACGACGGAGACGATGCAGCGGACGACTCGGCGCCATGGTGGTGGTGAGGAGGCAATTCCAGCAGCCGCAGTGTTGGATCCCTCCTCATCCACGCGGGCGTCTGCAATGACAGTGCATTGCCATGATTGCTCGACTCGCCGGCGGCGGCGGCGCCGCCGCCGCCGGCATGCGGGTTGTCGAGGTTCACGCCGAACAGCCTTACGCGCTTCGCGGCCGTCGTGGGGCTCTCGATGACCGGAACCGAGTCGAGCACCACCGGTGAGCCCGCCGCCCTTACACCATCGCCGCTCGGCTGCAGCGTGTAGTGGTGGTGCAGCGGCGACGGCGCGCGCGCCAGCAGTGGTGCTTGCGGAGGAATCCTCGCCGAGCCGAACAGGAGGACCTGCCTCCCCATCGCGGCGGCGGGGTTGAAGGCGCGGAAGTCGAGGCCTTGCCTGAGGCGGTGCTCGTAGAGCGTGGCCGGCGGCGAGGGCGGCACGAAGAATCCCCCTCCGCCGCCGATCCCCCACGGGGCGTAGTGCGACGTGAGCGGCATCGGGAGCGGCAGCCCGCGGGGCAGCCGGAGCGGGTCGCGGGTGTCGGCGCGGCGCTTCCAGTCGATGAAGAGGCGGTGCCGCGCCGCCTCGTCGCCGATGCCGCGGGAGAAGGAGACGGTGTCCCCGGCGTCGAGGCGCTTCTCCTTGACGAAGCGGCTCCACCCCTTGGTCATCACGTAGCTCTGGCTGCTGTTCCAGTAGGAGTAGCGGAACCGCCATGGCTTCCCCGCGCGGTCCTCGAAGTTGAGCAGGAGGCCCTTCTCGTTCGCCGCCGCGTCCAGCGGGAAGTACTTCTCGGCGTACTGCTTCGGGATCACCAGCCGGTTCAGCTTCCCGACGTCGCTCGGCGTCACCACCTTGTCGAACATGTGCTCCTTCTCCACCACCTCCGCTTCTCCGCCGCCGCCGCCGCCGCCGCTCCCAGACGCCCCGGCGCCATCGTCGGAGCGAAAGGGAGTGCTGCTCCCTGACGCAGACGCCGACGCCGACGCGGAAGCCGCGTGATGAGCAGGAGACGACGACGACGACGTGGGCGCAGGCGCGGCTTCGGCCGTGGCCGTCATGAAGGGGATCTCTCGCCTTCCCGCCTCATCCTGCTCCTCGTCCTCCTCTTCTTTAGAAAACCTACTGCTTGTAGTGAACTCCAT

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CDS seq

ATGGAGTTCACTACAAGCAGTAGGTTTTCTAAAGAAGAGGAGGACGAGGAGCAGGATGAGGCGGGAAGGCGAGAGATCCCCTTCATGACGGCCACGGCCGAAGCCGCGCCTGCGCCCACGTCGTCGTCGTCGTCTCCTGCTCATCACGCGGCTTCCGCGTCGGCGTCGGCGTCTGCGTCAGGGAGCAGCACTCCCTTTCGCTCCGACGATGGCGCCGGGGCGTCTGGGAGCGGCGGCGGCGGCGGCGGCGGAGAAGCGGAGGTGGTGGAGAAGGAGCACATGTTCGACAAGGTGGTGACGCCGAGCGACGTCGGGAAGCTGAACCGGCTGGTGATCCCGAAGCAGTACGCCGAGAAGTACTTCCCGCTGGACGCGGCGGCGAACGAGAAGGGCCTCCTGCTCAACTTCGAGGACCGCGCGGGGAAGCCATGGCGGTTCCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGATGACCAAGGGGTGGAGCCGCTTCGTCAAGGAGAAGCGCCTCGACGCCGGGGACACCGTCTCCTTCTCCCGCGGCATCGGCGACGAGGCGGCGCGGCACCGCCTCTTCATCGACTGGAAGCGCCGCGCCGACACCCGCGACCCGCTCCGGCTGCCCCGCGGGCTGCCGCTCCCGATGCCGCTCACGTCGCACTACGCCCCGTGGGGGATCGGCGGCGGAGGGGGATTCTTCGTGCCGCCCTCGCCGCCGGCCACGCTCTACGAGCACCGCCTCAGGCAAGGCCTCGACTTCCGCGCCTTCAACCCCGCCGCCGCGATGGGGAGGCAGGTCCTCCTGTTCGGCTCGGCGAGGATTCCTCCGCAAGCACCACTGCTGGCGCGCGCGCCGTCGCCGCTGCACCACCACTACACGCTGCAGCCGAGCGGCGATGGTGTAAGGGCGGCGGGCTCACCGGTGGTGCTCGACTCGGTTCCGGTCATCGAGAGCCCCACGACGGCCGCGAAGCGCGTAAGGCTGTTCGGCGTGAACCTCGACAACCCGCATGCCGGCGGCGGCGGCGCCGCCGCCGCCGGCGAGTCGAGCAATCATGGCAATGCACTGTCATTGCAGACGCCCGCGTGGATGAGGAGGGATCCAACACTGCGGCTGCTGGAATTGCCTCCTCACCACCACCATGGCGCCGAGTCGTCCGCTGCATCGTCTCCGTCGTCGTCGTCTTCCTCCAAGAGGGACGCGCATTCGGCCTTGGATCTCGATCTGTAG

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Protein seq

MEFTTSSRFSKEEEDEEQDEAGRREIPFMTATAEAAPAPTSSSSSPAHHAASASASASASGSSTPFRSDDGAGASGSGGGGGGGEAEVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHRLFIDWKRRADTRDPLRLPRGLPLPMPLTSHYAPWGIGGGGGFFVPPSPPATLYEHRLRQGLDFRAFNPAAAMGRQVLLFGSARIPPQAPLLARAPSPLHHHYTLQPSGDGVRAAGSPVVLDSVPVIESPTTAAKRVRLFGVNLDNPHAGGGGAAAAGESSNHGNALSLQTPAWMRRDPTLRLLELPPHHHHGAESSAASSPSSSSSSKRDAHSALDLDL

Function B3 domain-containing protein Os02g0683500 [UniProtKB/Swiss-Prot:Q6EU30]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsIR64_02g0028710 OsIR64_02g0028710.01 Chr02 29129729 29131173 - NAM
CDS seq

ATGGAGTTCACTACAAGCAGTAGGTTTTCTAAAGAAGAGGAGGACGAGGAGCAGGATGAGGCGGGAAGGCGAGAGATCCCCTTCATGACGGCCACGGCCGAAGCCGCGCCTGCGCCCACGTCGTCGTCGTCGTCTCCTGCTCATCACGCGGCTTCCGCGTCGGCGTCGGCGTCTGCGTCAGGGAGCAGCACTCCCTTTCGCTCCGACGATGGCGCCGGGGCGTCTGGGAGCGGCGGCGGCGGCGGCGGCGGAGAAGCGGAGGTGGTGGAGAAGGAGCACATGTTCGACAAGGTGGTGACGCCGAGCGACGTCGGGAAGCTGAACCGGCTGGTGATCCCGAAGCAGTACGCCGAGAAGTACTTCCCGCTGGACGCGGCGGCGAACGAGAAGGGCCTCCTGCTCAACTTCGAGGACCGCGCGGGGAAGCCATGGCGGTTCCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGATGACCAAGGGGTGGAGCCGCTTCGTCAAGGAGAAGCGCCTCGACGCCGGGGACACCGTCTCCTTCTCCCGCGGCATCGGCGACGAGGCGGCGCGGCACCGCCTCTTCATCGACTGGAAGCGCCGCGCCGACACCCGCGACCCGCTCCGGCTGCCCCGCGGGCTGCCGCTCCCGATGCCGCTCACGTCGCACTACGCCCCGTGGGGGATCGGCGGCGGAGGGGGATTCTTCGTGCCGCCCTCGCCGCCGGCCACGCTCTACGAGCACCGCCTCAGGCAAGGCCTCGACTTCCGCGCCTTCAACCCCGCCGCCGCGATGGGGAGGCAGGTCCTCCTGTTCGGCTCGGCGAGGATTCCTCCGCAAGCACCACTGCTGGCGCGCGCGCCGTCGCCGCTGCACCACCACTACACGCTGCAGCCGAGCGGCGATGGTGTAAGGGCGGCGGGCTCACCGGTGGTGCTCGACTCGGTTCCGGTCATCGAGAGCCCCACGACGGCCGCGAAGCGCGTAAGGCTGTTCGGCGTGAACCTCGACAACCCGCATGCCGGCGGCGGCGGCGCCGCCGCCGCCGGCGAGTCGAGCAATCATGGCAATGCACTGTCATTGCAGACGCCCGCGTGGATGAGGAGGGATCCAACACTGCGGCTGCTGGAATTGCCTCCTCACCACCACCATGGCGCCGAGTCGTCCGCTGCATCGTCTCCGTCGTCGTCGTCTTCCTCCAAGAGGGACGCGCATTCGGCCTTGGATCTCGATCTGTAG

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Protein seq

MEFTTSSRFSKEEEDEEQDEAGRREIPFMTATAEAAPAPTSSSSSPAHHAASASASASASGSSTPFRSDDGAGASGSGGGGGGGEAEVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHRLFIDWKRRADTRDPLRLPRGLPLPMPLTSHYAPWGIGGGGGFFVPPSPPATLYEHRLRQGLDFRAFNPAAAMGRQVLLFGSARIPPQAPLLARAPSPLHHHYTLQPSGDGVRAAGSPVVLDSVPVIESPTTAAKRVRLFGVNLDNPHAGGGGAAAAGESSNHGNALSLQTPAWMRRDPTLRLLELPPHHHHGAESSAASSPSSSSSSKRDAHSALDLDL

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.066959 0.166503 0.127936

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0683500 RBH 0.0 0.193105 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g45850 RBH 0.0 0.129879 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os02g0683500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0029210 RBH 0.118165 0.0 0.656982
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0029270 RBH 0.0 0.0 0.264107
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0029140 RBH 0.185872 0.769843 0.457251
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0028730 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0028910 RBH 0.0 0.0 1.337038
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0454000 RBH 0.854802 0.7539325 1.3799355
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0023380 RBH 0.141149 0.147459 0.102448
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0481800 RBH 0.580335 0.3979945 6.0066625
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0029040 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0028770 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0029060 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0028930 RBH 0.0 0.0 0.147182
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0028610 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G029180 RBH 0.0 0.615522 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0028950 RBH 0.0 2.373336 1.482090
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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