Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0025920 | OGI:02072000 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:27159889-27161044 | ||||||||
| Gene Symbol | WAK21, OsWAK21, - | ||||||||||
| DNA seq | ttacaaaagggataaaagaaaaaggtctaacaaagtttgcagatatggattttgagttacaagaaggttatcaacccacgaagctaagtgcggcttgaagagaagggggcatctgtgagaccagaggaggaggtcgtcaacgcaacgctggcggaggcagtggtcagactcgtcgatgttgttgaaggctttgttgttgcggcatttccaaatgttccaggtgatcgcgaggaggatggtgcgccatatttgttgagggaggtgcgtggagttggtctggtcgatctgccacagatcttcaatggacggaagaagccgtagttcctggtcattgaagccaagggcagtccacgctctggacgccctagggcagcgaaggaagaggtgttcaacatcttcaacaagagggcagaagtggcagctaggagaggacgcgatcccatggcgaaagcggcgaacattggtgaaaattcgtcgtcggtgcagtgtccagaggaagagtttgcacttgttctgggcaaaattgtcccaagagttgcaccaaaatgggtcgtcatgcattttcatacgtacaactaatgatagtaatatacaactgacgtgggctattcatacgtactgcaacctaaaattacacacaagaagtataataatacaacataccctgctcagaactgaactacagagcatatcacttcaccgtgatatatatattgcacatatctaattagcgtggcaaactaattgaagatgataattcttgctccaaactgtagcaaccagaacctgggattccttcaggtgttaaatcaccaacatttgtataattattctgtgcataagagttactagtatttgggcttaaaaggtgctcgatttctccatcgtttcctgggagtagttgtaattttcttagcctcttagttttcagaaactgcaacctcatctctacttctttcatagtaggtctatctaatcctttaacttttaggcatgcctctgtaagtgcagcaaaatcatcgatctcttccttgtttgcctcttcaacaacatgaggatctattatttccatcagagagccctcttgaagtccttcaatgaagtaatgagacaagctttgttttacacctgcgtcattgatgaaaattggcttcat
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| CDS seq | atgaagccaattttcatcaatgacgcaggtgtaaaacaaagcttgtctcattacttcattgaaggacttcaagagggctctctgatggaaataatagatcctcatgttgttgaagaggcaaacaaggaagagatcgatgattttgctgcacttacagaggcatgcctaaaagttaaaggattagatagacctactatgaaagaagtagagatgaggttgcagtttctgaaaactaagaggctaagaaaattacaactactcccaggaaacgatggagaaatcgagcaccttttaagcccaaatactagtaactcttatgcacagaataattatacaaatgttggtgatttaacacctgaaggaatcccagatgttgaacacctcttccttcgctgccctagggcgtccagagcgtggactgcccttggcttcaatgaccaggaactacggcttcttccgtccattgaagatctgtggcagatcgaccagaccaactccacgcacctccctcaacaaatatggcgcaccatcctcctcgcgatcacctggaacatttggaaatgccgcaacaacaaagccttcaacaacatcgacgagtctgaccactgcctccgccagcgttgcgttgacgacctcctcctctggtctcacagatgcccccttctcttcaagccgcacttagcttcgtgggttgataaccttcttgtaactcaaaatccatatctgcaaactttgttagacctttttcttttatcccttttgtaa
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| Protein seq | MKPIFINDAGVKQSLSHYFIEGLQEGSLMEIIDPHVVEEANKEEIDDFAALTEACLKVKGLDRPTMKEVEMRLQFLKTKRLRKLQLLPGNDGEIEHLLSPNTSNSYAQNNYTNVGDLTPEGIPDVEHLFLRCPRASRAWTALGFNDQELRLLPSIEDLWQIDQTNSTHLPQQIWRTILLAITWNIWKCRNNKAFNNIDESDHCLRQRCVDDLLLWSHRCPLLFKPHLASWVDNLLVTQNPYLQTLLDLFLLSLL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0025920 | OsLima_02g0025920.01 | Chr02 | 27159889 | 27161044 | - | NAM | ||
| CDS seq | atgaagccaattttcatcaatgacgcaggtgtaaaacaaagcttgtctcattacttcattgaaggacttcaagagggctctctgatggaaataatagatcctcatgttgttgaagaggcaaacaaggaagagatcgatgattttgctgcacttacagaggcatgcctaaaagttaaaggattagatagacctactatgaaagaagtagagatgaggttgcagtttctgaaaactaagaggctaagaaaattacaactactcccaggaaacgatggagaaatcgagcaccttttaagcccaaatactagtaactcttatgcacagaataattatacaaatgttggtgatttaacacctgaaggaatcccagatgttgaacacctcttccttcgctgccctagggcgtccagagcgtggactgcccttggcttcaatgaccaggaactacggcttcttccgtccattgaagatctgtggcagatcgaccagaccaactccacgcacctccctcaacaaatatggcgcaccatcctcctcgcgatcacctggaacatttggaaatgccgcaacaacaaagccttcaacaacatcgacgagtctgaccactgcctccgccagcgttgcgttgacgacctcctcctctggtctcacagatgcccccttctcttcaagccgcacttagcttcgtgggttgataaccttcttgtaactcaaaatccatatctgcaaactttgttagacctttttcttttatcccttttgtaa
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| Protein seq | MKPIFINDAGVKQSLSHYFIEGLQEGSLMEIIDPHVVEEANKEEIDDFAALTEACLKVKGLDRPTMKEVEMRLQFLKTKRLRKLQLLPGNDGEIEHLLSPNTSNSYAQNNYTNVGDLTPEGIPDVEHLFLRCPRASRAWTALGFNDQELRLLPSIEDLWQIDQTNSTHLPQQIWRTILLAITWNIWKCRNNKAFNNIDESDHCLRQRCVDDLLLWSHRCPLLFKPHLASWVDNLLVTQNPYLQTLLDLFLLSLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0633066 | SBH | 0.088165 | 0.000000 | 0.796439 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g42150 | SBH | 0.102612 | 0.000000 | 0.143043 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0633066 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026140 | SBH | 0.074024 | 0.000000 | 0.411168 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026260 | SBH | 0.084580 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026090 | SBH | 0.0 | 0.793120 | 0.458768 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025680 | SBH | 0.034686 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025790 | SBH | 1.948071 | 0.0 | 0.463558 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0412400 | SBH | 0.5389205 | 0.3288485 | 0.6038495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025660 | SBH | 0.123555 | 0.0 | 0.054398 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0441100 | SBH | 0.9225525 | 0.1917245 | 1.911297 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025660 | SBH | 0.404916 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025960 | SBH | 2.644721 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025880 | SBH | 0.075280 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025490 | SBH | 0.130379 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G026100 | SBH | 0.034894 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025900 | SBH | 0.445132 | 0.0 | 0.000000 |
