Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0025710 | OGI:02071350 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:26960730-26963888 | ||||||||
| Gene Symbol | PSKR1, OsPSKR1, OsPSKR10, PSKR10 | ||||||||||
| DNA seq | tcactttgtcgcttcagtgctaccaccaatgttgtcaagccatagtacaagttcatgagttagaggcctcagttttggtgactcacttatgcacaaacaggcaatatcgatcatctgcaccatttgcatctcaaacttcttgtcatacattgcacggtccaatacttcagcttcacagtttttttctttcatatgcaaaacccatgagaccaactcccgagctccctttggcttgcacatatctacaggcctctttccagttaataactctaaaagaacaatgccaaaactataaacatcacctttgaaattggctactgaagattggccgtactcaggggggatgtagcctagtgtgccaactagatcagttgttacatgtgtatcatagggacagataagccgagcaagcccaaaatcagccaaatgagcttcgaaatcctcatctaaaagtatgttgcttgacttgatatcacggtggagtatatggggttggcatgacaagtgcaggtacgctaaacctctcgccgctccttttgctatctgaagccttgtttgccaacttaatctagatggaccatcaggcttttcatgaagccaatggtctaggctaccattctccatgtaagagtagatcagtagcctatcattgccaatcctgcaataaccttgcagaagtacaagattaggatgttgagcttttgataaagtctccacctcggctttgaactcacgctccatctggccaaaatcgcctgacagtcttttgatggcaatcgttgctccatctggtagtgttgccttgtacactagaccaaagccaccacaaccaatgatgtttgcctgatcaaagttgtttgtagatttcaatatgtcaccaatagtcattgccttgccgtcatccttgttctgaaacaaaagaaccaatgaagctggtgctaactcgagagcttcagttgtatctgcaacagccttaactatatagtcctgccttctaaagctactcttcaacacaagtacaacagcaacagacaacacaaatgctgctccaagtgcaatgccaatagctattcctaatatgacacccttgttctttccatttttctttacagacatggtaggagcatgagatgactggcatagtgctaagccagagtggatgccacagagtttggggttcccctcataagcagaacctgtgaatgttgagaattgccctcctaatggaattgcaccagttagattattgaatgccacactgaagctcgatagaaaattcagctttgttaatgaagaaggaatgcttccagtaagattattatgtgacaaatccaaggattccaagctcgacatgcctgatagctcatcaggaatcataccagaaatatggttgttactgaggtccaagacatgcaggttcttaaggttcccaaagcctggcaatatgggacctatgagcatgttgtggctgagaattagggagggcgggaaactgctaacctgattgtaccgtagccctttgcctgtcctgttctttttaatgaagaaaggaaaatagtcagtttctgtggattgctgtgagctgttgcatgtaagaaggcccttcatgcttgttagactgttcggaattcctccagacagtgtattattagaaagatccaaataaaacaaatgctcgagattgccaatccatgcagggatgttcccagacaatttattccatgacaaatccagcactttcaattgtgcgaagtttgctacccatgaaggtactgatcctgaaagatggctattagcaatgacaaacacttggatgttatgaaaaccatctattccagtcatcggcaaggccttcccatcattgaaattctttgtcagcacgaggcttgttaggcttgggcagccttgaaggacagataatgctgaggacacatttgtgaagctattgtttgaaagtgagatataggttagaaactgaagattcctgaaaccattagggatttcaccagtgaggttgtttgtggcaagattcaggcttctcagatgatggcaatctgacaaagcatctattgtgccgatgaacttatttgtgccaagatcaagtgagctcaattgtgacattgccgagcaattgagatcgatctgtccatggaatgaattgtttctcaggtacaacatcttcagtgatggtgaatgggacagtgatgaaggcaacggacccctgaataagttagactgtgcagagaaatactcaagcttgccaaggctaccaaaaacatttggaaggtatccagagaatgaattgaaagatatgtccagcttagaaaggctagacatattaccaaaccttggtgtcatcctaccagagagctgattctcctgcagagacaggtccctcagcgaagacagcctgaaaagatcatctggcaagctcccagtgatgctatttagatcaacatatagctcctcgagctttgtgcagttcccaaaccctgctgggaactccccagataggagattcgacgtgaaccggagaacacggatcactccatttggatcgcagatgctggtatcaatgtgccctgtgaacatgttgtaccccgcatcaaacatggcaaggagcgttgaaccatggagcgtgggatgctgttctttgaatgagttgagggatatattgaagacctcaatcactgggagagacacgttggtcgggaattcaccagagaactcattgtcgctaagatcaagacgttgtagcctctggagctggaccagggttgccgggacggcaccatggaggttgttgctggacaggttgagccactggagctggtccagctgcccgagcgacactgccagctcgccccttagcttcatgccttggaggtccagcccgatgacccggccaccatcgttgcacttgactccaagccaagcacagcaattggctgtttcagaagtggcatttgggaccgtccagccgctgccgcttccgctgagaccttgcatgaagcccagcagtgcactagcatcaccagggtcacagtagctttgattcaaggagttggttgggaagaggaacagcaggtggaaaaacaagcagaaaaagaaacgccatggccatgtggtggtgagttgcatcatcaaggaacacaccat
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| CDS seq | atggtgtgttccttgatgatgcaactcaccaccacatggccatggcgtttctttttctgcttgtttttccacctgctgttcctcttcccaaccaactccttgaatcaaagctactgtgaccctggtgatgctagtgcactgctgggcttcatgcaaggtctcagcggaagcggcagcggctggacggtcccaaatgccacttctgaaacagccaattgctgtgcttggcttggagtcaagtgcaacgatggtggccgggtcatcgggctggacctccaaggcatgaagctaaggggcgagctggcagtgtcgctcgggcagctggaccagctccagtggctcaacctgtccagcaacaacctccatggtgccgtcccggcaaccctggtccagctccagaggctacaacgtcttgatcttagcgacaatgagttctctggtgaattcccgaccaacgtgtctctcccagtgattgaggtcttcaatatatccctcaactcattcaaagaacagcatcccacgctccatggttcaacgctccttgccatgtttgatgcggggtacaacatgttcacagggcacattgataccagcatctgcgatccaaatggagtgatccgtgttctccggttcacgtcgaatctcctatctggggagttcccagcagggtttgggaactgcacaaagctcgaggagctatatgttgatctaaatagcatcactgggagcttgccagatgatcttttcaggctgtcttcgctgagggacctgtctctgcaggagaatcagctctctggtaggatgacaccaaggtttggtaatatgtctagcctttctaagctggacatatctttcaattcattctctggataccttccaaatgtttttggtagccttggcaagcttgagtatttctctgcacagtctaacttattcaggggtccgttgccttcatcactgtcccattcaccatcactgaagatgttgtacctgagaaacaattcattccatggacagatcgatctcaattgctcggcaatgtcacaattgagctcacttgatcttggcacaaataagttcatcggcacaatagatgctttgtcagattgccatcatctgagaagcctgaatcttgccacaaacaacctcactggtgaaatccctaatggtttcaggaatcttcagtttctaacctatatctcactttcaaacaatagcttcacaaatgtgtcctcagcattatctgtccttcaaggctgcccaagcctaacaagcctcgtgctgacaaagaatttcaatgatgggaaggccttgccgatgactggaatagatggttttcataacatccaagtgtttgtcattgctaatagccatctttcaggatcagtaccttcatgggtagcaaacttcgcacaattgaaagtgctggatttgtcatggaataaattgtctgggaacatccctgcatggattggcaatctcgagcatttgttttatttggatctttctaataatacactgtctggaggaattccgaacagtctaacaagcatgaagggccttcttacatgcaacagctcacagcaatccacagaaactgactattttcctttcttcattaaaaagaacaggacaggcaaagggctacggtacaatcaggttagcagtttcccgccctccctaattctcagccacaacatgctcataggtcccatattgccaggctttgggaaccttaagaacctgcatgtcttggacctcagtaacaaccatatttctggtatgattcctgatgagctatcaggcatgtcgagcttggaatccttggatttgtcacataataatcttactggaagcattccttcttcattaacaaagctgaattttctatcgagcttcagtgtggcattcaataatctaactggtgcaattccattaggagggcaattctcaacattcacaggttctgcttatgaggggaaccccaaactctgtggcatccactctggcttagcactatgccagtcatctcatgctcctaccatgtctgtaaagaaaaatggaaagaacaagggtgtcatattaggaatagctattggcattgcacttggagcagcatttgtgttgtctgttgctgttgtacttgtgttgaagagtagctttagaaggcaggactatatagttaaggctgttgcagatacaactgaagctctcgagattggcaatgataggctactgatctactcttacatggagaatggtagcctagaccattggcttcatgaaaagcctgatggtccatctagattaagttggcaaacaaggcttcagatagcaaaaggagcggcgagaggtttagcgtacctgcacttgtcatgccaaccccatatactccaccgtgatatcaagtcaagcaacatacttttagatgaggatttcgaagctcatttggctgattttgggcttgctcggcttatctgtccctatgatacacatgtaacaactgatctagttggcacactaggctacatcccccctgagtacggccaatcttcagtagccaatttcaaaggtgatgtttatagttttggcattgttcttttagagttattaactggaaagaggcctgtagatatgtgcaagccaaagggagctcgggagttggtctcatgggttttgcatatgaaagaaaaaaactgtgaagctgaagtattggaccgtgcaatgtatgacaagaagtttgagatgcaaatggtgcagatgatcgatattgcctgtttgtgcataagtgagtcaccaaaactgaggcctctaactcatgaacttgtactatggcttgacaacattggtggtagcactgaagcgacaaagtga
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| Protein seq | MVCSLMMQLTTTWPWRFFFCLFFHLLFLFPTNSLNQSYCDPGDASALLGFMQGLSGSGSGWTVPNATSETANCCAWLGVKCNDGGRVIGLDLQGMKLRGELAVSLGQLDQLQWLNLSSNNLHGAVPATLVQLQRLQRLDLSDNEFSGEFPTNVSLPVIEVFNISLNSFKEQHPTLHGSTLLAMFDAGYNMFTGHIDTSICDPNGVIRVLRFTSNLLSGEFPAGFGNCTKLEELYVDLNSITGSLPDDLFRLSSLRDLSLQENQLSGRMTPRFGNMSSLSKLDISFNSFSGYLPNVFGSLGKLEYFSAQSNLFRGPLPSSLSHSPSLKMLYLRNNSFHGQIDLNCSAMSQLSSLDLGTNKFIGTIDALSDCHHLRSLNLATNNLTGEIPNGFRNLQFLTYISLSNNSFTNVSSALSVLQGCPSLTSLVLTKNFNDGKALPMTGIDGFHNIQVFVIANSHLSGSVPSWVANFAQLKVLDLSWNKLSGNIPAWIGNLEHLFYLDLSNNTLSGGIPNSLTSMKGLLTCNSSQQSTETDYFPFFIKKNRTGKGLRYNQVSSFPPSLILSHNMLIGPILPGFGNLKNLHVLDLSNNHISGMIPDELSGMSSLESLDLSHNNLTGSIPSSLTKLNFLSSFSVAFNNLTGAIPLGGQFSTFTGSAYEGNPKLCGIHSGLALCQSSHAPTMSVKKNGKNKGVILGIAIGIALGAAFVLSVAVVLVLKSSFRRQDYIVKAVADTTEALEIGNDRLLIYSYMENGSLDHWLHEKPDGPSRLSWQTRLQIAKGAARGLAYLHLSCQPHILHRDIKSSNILLDEDFEAHLADFGLARLICPYDTHVTTDLVGTLGYIPPEYGQSSVANFKGDVYSFGIVLLELLTGKRPVDMCKPKGARELVSWVLHMKEKNCEAEVLDRAMYDKKFEMQMVQMIDIACLCISESPKLRPLTHELVLWLDNIGGSTEATK |
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| Function | Phytosulfokine receptor 1 [UniProtKB/Swiss-Prot:Q8LPB4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0025710 | OsLima_02g0025710.01 | Chr02 | 26960730 | 26963888 | - | NAM | ||
| CDS seq | atggtgtgttccttgatgatgcaactcaccaccacatggccatggcgtttctttttctgcttgtttttccacctgctgttcctcttcccaaccaactccttgaatcaaagctactgtgaccctggtgatgctagtgcactgctgggcttcatgcaaggtctcagcggaagcggcagcggctggacggtcccaaatgccacttctgaaacagccaattgctgtgcttggcttggagtcaagtgcaacgatggtggccgggtcatcgggctggacctccaaggcatgaagctaaggggcgagctggcagtgtcgctcgggcagctggaccagctccagtggctcaacctgtccagcaacaacctccatggtgccgtcccggcaaccctggtccagctccagaggctacaacgtcttgatcttagcgacaatgagttctctggtgaattcccgaccaacgtgtctctcccagtgattgaggtcttcaatatatccctcaactcattcaaagaacagcatcccacgctccatggttcaacgctccttgccatgtttgatgcggggtacaacatgttcacagggcacattgataccagcatctgcgatccaaatggagtgatccgtgttctccggttcacgtcgaatctcctatctggggagttcccagcagggtttgggaactgcacaaagctcgaggagctatatgttgatctaaatagcatcactgggagcttgccagatgatcttttcaggctgtcttcgctgagggacctgtctctgcaggagaatcagctctctggtaggatgacaccaaggtttggtaatatgtctagcctttctaagctggacatatctttcaattcattctctggataccttccaaatgtttttggtagccttggcaagcttgagtatttctctgcacagtctaacttattcaggggtccgttgccttcatcactgtcccattcaccatcactgaagatgttgtacctgagaaacaattcattccatggacagatcgatctcaattgctcggcaatgtcacaattgagctcacttgatcttggcacaaataagttcatcggcacaatagatgctttgtcagattgccatcatctgagaagcctgaatcttgccacaaacaacctcactggtgaaatccctaatggtttcaggaatcttcagtttctaacctatatctcactttcaaacaatagcttcacaaatgtgtcctcagcattatctgtccttcaaggctgcccaagcctaacaagcctcgtgctgacaaagaatttcaatgatgggaaggccttgccgatgactggaatagatggttttcataacatccaagtgtttgtcattgctaatagccatctttcaggatcagtaccttcatgggtagcaaacttcgcacaattgaaagtgctggatttgtcatggaataaattgtctgggaacatccctgcatggattggcaatctcgagcatttgttttatttggatctttctaataatacactgtctggaggaattccgaacagtctaacaagcatgaagggccttcttacatgcaacagctcacagcaatccacagaaactgactattttcctttcttcattaaaaagaacaggacaggcaaagggctacggtacaatcaggttagcagtttcccgccctccctaattctcagccacaacatgctcataggtcccatattgccaggctttgggaaccttaagaacctgcatgtcttggacctcagtaacaaccatatttctggtatgattcctgatgagctatcaggcatgtcgagcttggaatccttggatttgtcacataataatcttactggaagcattccttcttcattaacaaagctgaattttctatcgagcttcagtgtggcattcaataatctaactggtgcaattccattaggagggcaattctcaacattcacaggttctgcttatgaggggaaccccaaactctgtggcatccactctggcttagcactatgccagtcatctcatgctcctaccatgtctgtaaagaaaaatggaaagaacaagggtgtcatattaggaatagctattggcattgcacttggagcagcatttgtgttgtctgttgctgttgtacttgtgttgaagagtagctttagaaggcaggactatatagttaaggctgttgcagatacaactgaagctctcgagattggcaatgataggctactgatctactcttacatggagaatggtagcctagaccattggcttcatgaaaagcctgatggtccatctagattaagttggcaaacaaggcttcagatagcaaaaggagcggcgagaggtttagcgtacctgcacttgtcatgccaaccccatatactccaccgtgatatcaagtcaagcaacatacttttagatgaggatttcgaagctcatttggctgattttgggcttgctcggcttatctgtccctatgatacacatgtaacaactgatctagttggcacactaggctacatcccccctgagtacggccaatcttcagtagccaatttcaaaggtgatgtttatagttttggcattgttcttttagagttattaactggaaagaggcctgtagatatgtgcaagccaaagggagctcgggagttggtctcatgggttttgcatatgaaagaaaaaaactgtgaagctgaagtattggaccgtgcaatgtatgacaagaagtttgagatgcaaatggtgcagatgatcgatattgcctgtttgtgcataagtgagtcaccaaaactgaggcctctaactcatgaacttgtactatggcttgacaacattggtggtagcactgaagcgacaaagtga
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| Protein seq | MVCSLMMQLTTTWPWRFFFCLFFHLLFLFPTNSLNQSYCDPGDASALLGFMQGLSGSGSGWTVPNATSETANCCAWLGVKCNDGGRVIGLDLQGMKLRGELAVSLGQLDQLQWLNLSSNNLHGAVPATLVQLQRLQRLDLSDNEFSGEFPTNVSLPVIEVFNISLNSFKEQHPTLHGSTLLAMFDAGYNMFTGHIDTSICDPNGVIRVLRFTSNLLSGEFPAGFGNCTKLEELYVDLNSITGSLPDDLFRLSSLRDLSLQENQLSGRMTPRFGNMSSLSKLDISFNSFSGYLPNVFGSLGKLEYFSAQSNLFRGPLPSSLSHSPSLKMLYLRNNSFHGQIDLNCSAMSQLSSLDLGTNKFIGTIDALSDCHHLRSLNLATNNLTGEIPNGFRNLQFLTYISLSNNSFTNVSSALSVLQGCPSLTSLVLTKNFNDGKALPMTGIDGFHNIQVFVIANSHLSGSVPSWVANFAQLKVLDLSWNKLSGNIPAWIGNLEHLFYLDLSNNTLSGGIPNSLTSMKGLLTCNSSQQSTETDYFPFFIKKNRTGKGLRYNQVSSFPPSLILSHNMLIGPILPGFGNLKNLHVLDLSNNHISGMIPDELSGMSSLESLDLSHNNLTGSIPSSLTKLNFLSSFSVAFNNLTGAIPLGGQFSTFTGSAYEGNPKLCGIHSGLALCQSSHAPTMSVKKNGKNKGVILGIAIGIALGAAFVLSVAVVLVLKSSFRRQDYIVKAVADTTEALEIGNDRLLIYSYMENGSLDHWLHEKPDGPSRLSWQTRLQIAKGAARGLAYLHLSCQPHILHRDIKSSNILLDEDFEAHLADFGLARLICPYDTHVTTDLVGTLGYIPPEYGQSSVANFKGDVYSFGIVLLELLTGKRPVDMCKPKGARELVSWVLHMKEKNCEAEVLDRAMYDKKFEMQMVQMIDIACLCISESPKLRPLTHELVLWLDNIGGSTEATK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.049633 | 0.270752 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0629400 | RBH | 0.681935 | 1.343694 | 1.066910 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g41890 | RBH | 0.456792 | 0.882729 | 0.283605 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0629400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025960 | RBH | 0.243819 | 9.333323 | 0.772347 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026090 | RBH | 0.089398 | 5.541671 | 0.926564 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025910 | RBH | 0.133952 | 4.585774 | 3.129041 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025510 | RBH | 0.211852 | 0.140009 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025620 | RBH | 1.153533 | 7.357484 | 6.370671 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0409000 | RBH | 2.0224935 | 26.425974 | 1.07409 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025510 | RBH | 0.335126 | 0.737216 | 0.246583 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0437700 | RBH | 1.9938245 | 11.5199475 | 2.7990075 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019190 | SBH | 0.030346 | 0.027204 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025490 | RBH | 0.452380 | 10.404816 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025830 | RBH | 0.0 | 21.102486 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025730 | RBH | 0.563203 | 1.421297 | 0.255648 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025290 | RBH | 0.056024 | 4.479958 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025900 | RBH | 0.157259 | 0.000000 | 0.537505 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025750 | RBH | 0.568007 | 33.833950 | 0.273109 |
