Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0025640 | OGI:02071230 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:26922511-26925181 | ||||||||
| Gene Symbol | ARF8, OsARF8 | ||||||||||
| DNA seq | atgttaccgtgggaacggcagccaaaagccaccaccaccaacctctcgtcttcgcctcctctcccaccccctcacgacgaacactcacacggtcacaccactacccctgcgagatcggttgctggcgctgctggtggtggtggtggtggtgggtgcgtggcgatgatcacgttcgcggacctggcggagccggcgcccggcgccgagcggtgcgtcgaccggcagctgtggctggcgtgcgcggggggcatgtgcaccgtgccgccggtgggcgccgccgtgtactacttcccgcaggggcacgccgagcacgcgctcggcctcgccgcgccggagctctccgcggcgcgcgtcccggcgctcgtgccctgccgcgtcgcgtccgtgcggtacatggccgacccggacaccgacgaggtgttcgccaggatccgcctcgtgccgctccgcgccgcggaggatggggacgtcgaggaggatggcgccgcggcaggcgaggagcacgagaagccggcgtcgttcgccaagacgctgacgcagtcggatgccaacaacggcggggggttctcggtgcccaggtactgcgccgagaccatcttcccgcgcctggactacgccgccgacccgcccgtgcagaccgtcgtcgccaaggacgtccatggagtcgcctggaacttccgccacatctaccggggcacgccgcgccggcacctgctcaccacggggtggagcacgttcgtgaaccagaagaagctcgtggccggcgactccatcgtgttcctccgcggcgacggaggggacctgcacgtcggcatccggcgcgccaagcgcgggttttgcggcggcggaggcggagccgaggaggcctccctgcccgggtgggaccagtacggcggcctgatgcgaggcaatgcgagcccgtgcgcggccgccaaggggcggggcaaggtgcgcgcggaggacgtcgtcgaggcggcgaggctggcgagcggcgggcagccgttcgaggtcgtgtactacccgcgcgccagcacgccggagttctgcgtgcgcgcggcggcggtccgcgcggcgatgcgggtgcagtggtgccccgggatgcggttcaagatggcgttcgagaccgaggactcctcccggatcagctggttcatgggcaccgtcgccagcgtccaggtcgccgaccccatccgttggccgcagtcgccgtggcggcttctccaggtacggtacaacatctacaccaccgcaaaccaatcaaaattttttgctcctttctcacttcctgaatcaatgaactccaggtgacctgggacgaaccggacctcctccagaacgtgaagcgggtgagcccatggctggtcgagctggtgtcgagcatgccggccatccacctctcgtccttctcgccgccgcgcaagaagccccggattccggcgtacccggagttccccttcgaggggcagctcctcaacccggcgttcccgccaaacccgctggcacacggccaccaccattaccatcacaaccacccgtccttcttcccgttccccgacgttagtgctcctgcaggcatacagggagccaggcatgcgcaatttggtccatctttatcagatctccaccttacccacctgcagtcgagcctcatgtacccggggctccgccgccccgatcatgtcggtccaacatccatcccgccaccaagaatcagcactgacctgacaatgggcagctcgccgccggcgcgcgctctgtccatgggcgccaagaagcccgacgacgccaagccgccggggctaatgctgttcgggcagaggatactgaccgagcgccagatgagccttagcggcaccacctcgccggcggccaccgggaacagctctctcaactggaacaccgagaaaggtgcctcggagggctcgggctccggcgtcatccagaacagccccaccgacaacacgtcgtcggagaggctccagtggttcagggagaacagcaccgtctccgagctcgggctggagcccgggcagtgcaaggtgttcatcgagtccgacacggtcggccgcaacctcgacctctcgtcgctggcctcgttcgagcagctctacggccggctgtccgagatgttctgcatcgacagcgcggagctgaggagccgtgtgctctaccgtggcgccaccggcgaagtgaggcacgccggcgacgagccattcaggtgagaaacacatcaaacagcaacataataatgacaacatcccatgcatcatgcatgtcatgtgcccgctgttcgtgttacagttgcaacgaatcatgtagcgggcaacctttgaactgatgaaacagtctttccctgacatttcagcgagttcattaagttggcgaggaggcttaccatactaaccgacgccgggagcgacaacttagggagctagagagcaagaggacaaccgggagcatcgccgtagtatgtacagcttgaatgagcttatgattttgtatcaactagtagcagtagtagcagcactagtaatttccgttcaactagtaatgtccccaactctgcagtagagatttcaacaagaaagctcaatctgcacaggtatcctgttctcctgtatccttcttcatcatcatcaacaacgatcagctgcgtgtacttattgattcc
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| CDS seq | atgttaccgtgggaacggcagccaaaagccaccaccaccaacctctcgtcttcgcctcctctcccaccccctcacgacgaacactcacacggtcacaccactacccctgcgagatcggttgctggcgctgctggtggtggtggtggtggtgggtgcgtggcgatgatcacgttcgcggacctggcggagccggcgcccggcgccgagcggtgcgtcgaccggcagctgtggctggcgtgcgcggggggcatgtgcaccgtgccgccggtgggcgccgccgtgtactacttcccgcaggggcacgccgagcacgcgctcggcctcgccgcgccggagctctccgcggcgcgcgtcccggcgctcgtgccctgccgcgtcgcgtccgtgcggtacatggccgacccggacaccgacgaggtgttcgccaggatccgcctcgtgccgctccgcgccgcggaggatggggacgtcgaggaggatggcgccgcggcaggcgaggagcacgagaagccggcgtcgttcgccaagacgctgacgcagtcggatgccaacaacggcggggggttctcggtgcccaggtactgcgccgagaccatcttcccgcgcctggactacgccgccgacccgcccgtgcagaccgtcgtcgccaaggacgtccatggagtcgcctggaacttccgccacatctaccggggcacgccgcgccggcacctgctcaccacggggtggagcacgttcgtgaaccagaagaagctcgtggccggcgactccatcgtgttcctccgcggcgacggaggggacctgcacgtcggcatccggcgcgccaagcgcgggttttgcggcggcggaggcggagccgaggaggcctccctgcccgggtgggaccagtacggcggcctgatgcgaggcaatgcgagcccgtgcgcggccgccaaggggcggggcaaggtgcgcgcggaggacgtcgtcgaggcggcgaggctggcgagcggcgggcagccgttcgaggtcgtgtactacccgcgcgccagcacgccggagttctgcgtgcgcgcggcggcggtccgcgcggcgatgcgggtgcagtggtgccccgggatgcggttcaagatggcgttcgagaccgaggactcctcccggatcagctggttcatgggcaccgtcgccagcgtccaggtcgccgaccccatccgttggccgcagtcgccgtggcggcttctccaggtgacctgggacgaaccggacctcctccagaacgtgaagcgggtgagcccatggctggtcgagctggtgtcgagcatgccggccatccacctctcgtccttctcgccgccgcgcaagaagccccggattccggcgtacccggagttccccttcgaggggcagctcctcaacccggcgttcccgccaaacccgctggcacacggccaccaccattaccatcacaaccacccgtccttcttcccgttccccgacgttagtgctcctgcaggcatacagggagccaggcatgcgcaatttggtccatctttatcagatctccaccttacccacctgcagtcgagcctcatgtacccggggctccgccgccccgatcatgtcggtccaacatccatcccgccaccaagaatcagcactgacctgacaatgggcagctcgccgccggcgcgcgctctgtccatgggcgccaagaagcccgacgacgccaagccgccggggctaatgctgttcgggcagaggatactgaccgagcgccagatgagccttagcggcaccacctcgccggcggccaccgggaacagctctctcaactggaacaccgagaaaggtgcctcggagggctcgggctccggcgtcatccagaacagccccaccgacaacacgtcgtcggagaggctccagtggttcagggagaacagcaccgtctccgagctcgggctggagcccgggcagtgcaaggtgttcatcgagtccgacacggtcggccgcaacctcgacctctcgtcgctggcctcgttcgagcagctctacggccggctgtccgagatgttctgcatcgacagcgcggagctgaggagccgtgtgctctaccgtggcgccaccggcgaagtgaggcacgccggcgacgagccattcagcgagttcattaagttggcgaggaggcttaccatactaaccgacgccgggagcgacaacttagggagctag
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| Protein seq | MLPWERQPKATTTNLSSSPPLPPPHDEHSHGHTTTPARSVAGAAGGGGGGGCVAMITFADLAEPAPGAERCVDRQLWLACAGGMCTVPPVGAAVYYFPQGHAEHALGLAAPELSAARVPALVPCRVASVRYMADPDTDEVFARIRLVPLRAAEDGDVEEDGAAAGEEHEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPVQTVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRGDGGDLHVGIRRAKRGFCGGGGGAEEASLPGWDQYGGLMRGNASPCAAAKGRGKVRAEDVVEAARLASGGQPFEVVYYPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPQSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSSMPAIHLSSFSPPRKKPRIPAYPEFPFEGQLLNPAFPPNPLAHGHHHYHHNHPSFFPFPDVSAPAGIQGARHAQFGPSLSDLHLTHLQSSLMYPGLRRPDHVGPTSIPPPRISTDLTMGSSPPARALSMGAKKPDDAKPPGLMLFGQRILTERQMSLSGTTSPAATGNSSLNWNTEKGASEGSGSGVIQNSPTDNTSSERLQWFRENSTVSELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLYGRLSEMFCIDSAELRSRVLYRGATGEVRHAGDEPFSEFIKLARRLTILTDAGSDNLGS |
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| Function | Auxin response factor 8 [UniProtKB/Swiss-Prot:Q6K223] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0025640 | OsLima_02g0025640.01 | Chr02 | 26922511 | 26925181 | + | NAM | ||
| CDS seq | atgttaccgtgggaacggcagccaaaagccaccaccaccaacctctcgtcttcgcctcctctcccaccccctcacgacgaacactcacacggtcacaccactacccctgcgagatcggttgctggcgctgctggtggtggtggtggtggtgggtgcgtggcgatgatcacgttcgcggacctggcggagccggcgcccggcgccgagcggtgcgtcgaccggcagctgtggctggcgtgcgcggggggcatgtgcaccgtgccgccggtgggcgccgccgtgtactacttcccgcaggggcacgccgagcacgcgctcggcctcgccgcgccggagctctccgcggcgcgcgtcccggcgctcgtgccctgccgcgtcgcgtccgtgcggtacatggccgacccggacaccgacgaggtgttcgccaggatccgcctcgtgccgctccgcgccgcggaggatggggacgtcgaggaggatggcgccgcggcaggcgaggagcacgagaagccggcgtcgttcgccaagacgctgacgcagtcggatgccaacaacggcggggggttctcggtgcccaggtactgcgccgagaccatcttcccgcgcctggactacgccgccgacccgcccgtgcagaccgtcgtcgccaaggacgtccatggagtcgcctggaacttccgccacatctaccggggcacgccgcgccggcacctgctcaccacggggtggagcacgttcgtgaaccagaagaagctcgtggccggcgactccatcgtgttcctccgcggcgacggaggggacctgcacgtcggcatccggcgcgccaagcgcgggttttgcggcggcggaggcggagccgaggaggcctccctgcccgggtgggaccagtacggcggcctgatgcgaggcaatgcgagcccgtgcgcggccgccaaggggcggggcaaggtgcgcgcggaggacgtcgtcgaggcggcgaggctggcgagcggcgggcagccgttcgaggtcgtgtactacccgcgcgccagcacgccggagttctgcgtgcgcgcggcggcggtccgcgcggcgatgcgggtgcagtggtgccccgggatgcggttcaagatggcgttcgagaccgaggactcctcccggatcagctggttcatgggcaccgtcgccagcgtccaggtcgccgaccccatccgttggccgcagtcgccgtggcggcttctccaggtgacctgggacgaaccggacctcctccagaacgtgaagcgggtgagcccatggctggtcgagctggtgtcgagcatgccggccatccacctctcgtccttctcgccgccgcgcaagaagccccggattccggcgtacccggagttccccttcgaggggcagctcctcaacccggcgttcccgccaaacccgctggcacacggccaccaccattaccatcacaaccacccgtccttcttcccgttccccgacgttagtgctcctgcaggcatacagggagccaggcatgcgcaatttggtccatctttatcagatctccaccttacccacctgcagtcgagcctcatgtacccggggctccgccgccccgatcatgtcggtccaacatccatcccgccaccaagaatcagcactgacctgacaatgggcagctcgccgccggcgcgcgctctgtccatgggcgccaagaagcccgacgacgccaagccgccggggctaatgctgttcgggcagaggatactgaccgagcgccagatgagccttagcggcaccacctcgccggcggccaccgggaacagctctctcaactggaacaccgagaaaggtgcctcggagggctcgggctccggcgtcatccagaacagccccaccgacaacacgtcgtcggagaggctccagtggttcagggagaacagcaccgtctccgagctcgggctggagcccgggcagtgcaaggtgttcatcgagtccgacacggtcggccgcaacctcgacctctcgtcgctggcctcgttcgagcagctctacggccggctgtccgagatgttctgcatcgacagcgcggagctgaggagccgtgtgctctaccgtggcgccaccggcgaagtgaggcacgccggcgacgagccattcagcgagttcattaagttggcgaggaggcttaccatactaaccgacgccgggagcgacaacttagggagctag
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| Protein seq | MLPWERQPKATTTNLSSSPPLPPPHDEHSHGHTTTPARSVAGAAGGGGGGGCVAMITFADLAEPAPGAERCVDRQLWLACAGGMCTVPPVGAAVYYFPQGHAEHALGLAAPELSAARVPALVPCRVASVRYMADPDTDEVFARIRLVPLRAAEDGDVEEDGAAAGEEHEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPVQTVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRGDGGDLHVGIRRAKRGFCGGGGGAEEASLPGWDQYGGLMRGNASPCAAAKGRGKVRAEDVVEAARLASGGQPFEVVYYPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPQSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSSMPAIHLSSFSPPRKKPRIPAYPEFPFEGQLLNPAFPPNPLAHGHHHYHHNHPSFFPFPDVSAPAGIQGARHAQFGPSLSDLHLTHLQSSLMYPGLRRPDHVGPTSIPPPRISTDLTMGSSPPARALSMGAKKPDDAKPPGLMLFGQRILTERQMSLSGTTSPAATGNSSLNWNTEKGASEGSGSGVIQNSPTDNTSSERLQWFRENSTVSELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLYGRLSEMFCIDSAELRSRVLYRGATGEVRHAGDEPFSEFIKLARRLTILTDAGSDNLGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.050846 | 0.259197 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0628600 | RBH | 0.444253 | 0.533825 | 1.144864 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g41800 | RBH | 0.300888 | 0.342426 | 0.304446 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0628600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025880 | RBH | 0.144194 | 9.290747 | 3.519259 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026020 | RBH | 0.000000 | 3.685713 | 1.590641 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025830 | RBH | 0.277724 | 6.135345 | 1.020181 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025440 | RBH | 0.0 | 0.416311 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025550 | RBH | 0.403406 | 6.614303 | 2.172952 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0408100 | RBH | 4.725002 | 13.9637 | 3.2096425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025440 | RBH | 0.037067 | 0.587650 | 0.189647 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0436800 | RBH | 6.3481835 | 8.433467 | 22.739783 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019830 | RBH | 0.0 | 0.046148 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025420 | RBH | 0.0 | 5.848580 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025760 | RBH | 0.0 | 24.109240 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025660 | RBH | 0.070976 | 1.085273 | 0.616401 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025220 | RBH | 0.045533 | 3.775048 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025830 | RBH | 0.0 | 3.081031 | 2.014462 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025680 | RBH | 0.0 | 5.655729 | 2.543994 |
