Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0025470 | OGI:02070750 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:26683641-26685122 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgagcgtccgtaccgagcggctcgcgtcgtgcctcgccgccgtggccgccaaaccggccgacttccgccgcgcgcacgccatcctcctcacctccggccacctctcctcccgctactccgtcaactgcctcatccgcgccgcctccgccccctccgcctccgcacttctccttcgtttcctcctcaaccaccgcttcctgccggaccacctgtccctctccttctccctccacccctgctcccgcctcccgagccaccccgtcgccagcgtcgtccactccctcgccgtcaggctcggccacgcccgcgacgtctacgttgtcaacgccgccgcctccgcctacttcgccgccgccgacgtcgcctccgccgagcggctcttctcggaggcgtccagggatgtagccgacgtcgttacgtggaccacgatggtcaccgggcacgccaacaccggcgacgtcgagcgtgcgaggtggttcttcgacgccatgcccgagaagaacgtggtgtcgtggaacacgatgctgggcgcgtacgcccgcgccgggatgctgccgaaggcgcggaagctgttcgaccgaatgcccaaccggaacgctgccacgtggggctcgatgatcaccggcctcttgcagtccgaccactgcgaggaggcgttgagggtgttcagcgacatggtcgcgtgcggcgtcgtgccgaatgagcctgcgctggtgagcaccgtctcggcatgcacgcagctgaggtggatggaacacggcacgtgggtgcacgggtacgccgagcgagagctgaacggggcgatgagcgctgtccttgcgacggcgatcgtagacatgtacggcaaatgtgggagcatccgtgatgccgtcagggtgttcgctgcaatgccggtgagaaacatctactcgtggaactcaatgatcgctgggcttgccatgaacggcagcgagaggcaggccctgtcactcttctggaagatgcagctggctggtgttcgaccaaatgacataacattcattggtttgctgagcgcttgcagccactcaggtcttgtagacgagggccgctggttgttctacaagatggtgaatcactttgggatccagccagtcccagagcactatggtctcatggttgatttgcttgggcggtccggtcatgtcagggaggcagtggatttcgtcaagagcatgcctgtggagccacacccaggcttatggggtgcacttgctggcgcctgcaagatccatggcgaggtggagctcggtgaggaggttgccaagaagctcattgagttggagcctcagcatggcagccggtacatcctcctgtcaaacatatatgccacctcgaacagatgggacgacatggctaatgtgcgcaggatcctgaaggatcgcaaggtccccaagggtacaggcaatgccatagttggaaatgattctcagtcttcaggatatgaaatcgattcgtga
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| CDS seq | atggcgagcgtccgtaccgagcggctcgcgtcgtgcctcgccgccgtggccgccaaaccggccgacttccgccgcgcgcacgccatcctcctcacctccggccacctctcctcccgctactccgtcaactgcctcatccgcgccgcctccgccccctccgcctccgcacttctccttcgtttcctcctcaaccaccgcttcctgccggaccacctgtccctctccttctccctccacccctgctcccgcctcccgagccaccccgtcgccagcgtcgtccactccctcgccgtcaggctcggccacgcccgcgacgtctacgttgtcaacgccgccgcctccgcctacttcgccgccgccgacgtcgcctccgccgagcggctcttctcggaggcgtccagggatgtagccgacgtcgttacgtggaccacgatggtcaccgggcacgccaacaccggcgacgtcgagcgtgcgaggtggttcttcgacgccatgcccgagaagaacgtggtgtcgtggaacacgatgctgggcgcgtacgcccgcgccgggatgctgccgaaggcgcggaagctgttcgaccgaatgcccaaccggaacgctgccacgtggggctcgatgatcaccggcctcttgcagtccgaccactgcgaggaggcgttgagggtgttcagcgacatggtcgcgtgcggcgtcgtgccgaatgagcctgcgctggtgagcaccgtctcggcatgcacgcagctgaggtggatggaacacggcacgtgggtgcacgggtacgccgagcgagagctgaacggggcgatgagcgctgtccttgcgacggcgatcgtagacatgtacggcaaatgtgggagcatccgtgatgccgtcagggtgttcgctgcaatgccggtgagaaacatctactcgtggaactcaatgatcgctgggcttgccatgaacggcagcgagaggcaggccctgtcactcttctggaagatgcagctggctggtgttcgaccaaatgacataacattcattggtttgctgagcgcttgcagccactcaggtcttgtagacgagggccgctggttgttctacaagatggtgaatcactttgggatccagccagtcccagagcactatggtctcatggttgatttgcttgggcggtccggtcatgtcagggaggcagtggatttcgtcaagagcatgcctgtggagccacacccaggcttatggggtgcacttgctggcgcctgcaagatccatggcgaggtggagctcggtgaggaggttgccaagaagctcattgagttggagcctcagcatggcagccggtacatcctcctgtcaaacatatatgccacctcgaacagatgggacgacatggctaatgtgcgcaggatcctgaaggatcgcaaggtccccaagggtacaggcaatgccatagttggaaatgattctcagtcttcaggatatgaaatcgattcgtga
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| Protein seq | MASVRTERLASCLAAVAAKPADFRRAHAILLTSGHLSSRYSVNCLIRAASAPSASALLLRFLLNHRFLPDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAADVASAERLFSEASRDVADVVTWTTMVTGHANTGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPNRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEVAKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIVGNDSQSSGYEIDS |
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| Function | Pentatricopeptide repeat-containing protein At5g66520 [UniProtKB/Swiss-Prot:Q9FJY7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0025470 | OsLima_02g0025470.01 | Chr02 | 26683641 | 26685122 | + | NAM | ||
| CDS seq | atggcgagcgtccgtaccgagcggctcgcgtcgtgcctcgccgccgtggccgccaaaccggccgacttccgccgcgcgcacgccatcctcctcacctccggccacctctcctcccgctactccgtcaactgcctcatccgcgccgcctccgccccctccgcctccgcacttctccttcgtttcctcctcaaccaccgcttcctgccggaccacctgtccctctccttctccctccacccctgctcccgcctcccgagccaccccgtcgccagcgtcgtccactccctcgccgtcaggctcggccacgcccgcgacgtctacgttgtcaacgccgccgcctccgcctacttcgccgccgccgacgtcgcctccgccgagcggctcttctcggaggcgtccagggatgtagccgacgtcgttacgtggaccacgatggtcaccgggcacgccaacaccggcgacgtcgagcgtgcgaggtggttcttcgacgccatgcccgagaagaacgtggtgtcgtggaacacgatgctgggcgcgtacgcccgcgccgggatgctgccgaaggcgcggaagctgttcgaccgaatgcccaaccggaacgctgccacgtggggctcgatgatcaccggcctcttgcagtccgaccactgcgaggaggcgttgagggtgttcagcgacatggtcgcgtgcggcgtcgtgccgaatgagcctgcgctggtgagcaccgtctcggcatgcacgcagctgaggtggatggaacacggcacgtgggtgcacgggtacgccgagcgagagctgaacggggcgatgagcgctgtccttgcgacggcgatcgtagacatgtacggcaaatgtgggagcatccgtgatgccgtcagggtgttcgctgcaatgccggtgagaaacatctactcgtggaactcaatgatcgctgggcttgccatgaacggcagcgagaggcaggccctgtcactcttctggaagatgcagctggctggtgttcgaccaaatgacataacattcattggtttgctgagcgcttgcagccactcaggtcttgtagacgagggccgctggttgttctacaagatggtgaatcactttgggatccagccagtcccagagcactatggtctcatggttgatttgcttgggcggtccggtcatgtcagggaggcagtggatttcgtcaagagcatgcctgtggagccacacccaggcttatggggtgcacttgctggcgcctgcaagatccatggcgaggtggagctcggtgaggaggttgccaagaagctcattgagttggagcctcagcatggcagccggtacatcctcctgtcaaacatatatgccacctcgaacagatgggacgacatggctaatgtgcgcaggatcctgaaggatcgcaaggtccccaagggtacaggcaatgccatagttggaaatgattctcagtcttcaggatatgaaatcgattcgtga
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| Protein seq | MASVRTERLASCLAAVAAKPADFRRAHAILLTSGHLSSRYSVNCLIRAASAPSASALLLRFLLNHRFLPDHLSLSFSLHPCSRLPSHPVASVVHSLAVRLGHARDVYVVNAAASAYFAAADVASAERLFSEASRDVADVVTWTTMVTGHANTGDVERARWFFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPNRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEVAKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIVGNDSQSSGYEIDS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0625100 | RBH | 0.227384 | 0.155803 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g41560 | RBH | 0.166739 | 0.113629 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0625100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025720 | RBH | 0.099749 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025860 | RBH | 0.086397 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025690 | RBH | 0.284175 | 0.0 | 0.156810 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025290 | RBH | 0.000000 | 0.079604 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025380 | RBH | 1.078262 | 1.944253 | 0.378972 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0405200 | RBH | 0.35617 | 1.0406795 | 0.2043225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025270 | RBH | 0.130574 | 0.0 | 0.041580 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0434200 | RBH | 0.555814 | 0.52189 | 1.0530255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019530 | SBH | 0.168235 | 0.155888 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025270 | RBH | 0.232706 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025610 | RBH | 1.105321 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025490 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025050 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025680 | RBH | 0.0 | 1.325527 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025530 | RBH | 0.0 | 0.0 | 0.0 |
