Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0023050 | OGI:02066290 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:24449765-24452341 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatcatgtcttcaaagagaggaggaggtggccgccgtggtcgtggctgtggccgtgggagaagtgctttggctgaaaatgacatggactttcatgaaacctccacaccttcttccccaagtactacttctgataaagaggacaatgttgagtttactccgcagcaaagcccactaccttgtcttgtaagcccatcagtagagcatgtatccaacacattactcaatccaaagatcaaccaccgatcggacgcaatcttcggtgatcaggttaatctaagagcaattaagttttgtcatagttgcatgagtaacaagttcttgtaggaagaataaactttgcagtctgactgaggtcaatgtttttttgcaggctgtggaacagttgaagttgcgacatcacaaacctttaaaatttcatgagagataccgtccttatttgagggatgctggcttgcttgggctctcacaaatttgccagaagatgcctcagttggacaaggcattgatcactgcccttgttgagcgttggagaccagaaactcatagtttccacctggcttctggggagatgacagttacactacaagatgtctcaatgttgttagctcttcctatcgatggccgtccagtttgttctaccactgatcatgattatgcgcagatggtcattgattgtctaggtcatgatccaagaggaccatcaatgcctggaaaatcttttctgcactacaaatggctaaagaagcatttctatgaattaccagaagggacagatgatcagactgtggagaggcatgttcgagcatatatcctgagccttctatgtggggtgctatttccagatggaacaggacggatgagtctgatatatcttccactgattgctgatctttctcttgttgggacatacagctggggatctgcagtgctggccttcctataccgttctctttgttctgttgcttcctcccacaatatcaagaacattggtggttcattgcttctcttgcagctttggagctgggagcgctcccatgttggcagaccgttggtccggtctcccgtgtgcccagagacagacattccacaggatgtgctcccagttggctttcgttgggtaggtgctcgcacacaaagtgagaatgctacacgctgtcttaagcagtacagggatgaactgaatctgcagcgagcagatcaggtgaagtgggagccgtacttgcacattgagtctgcaagcttgccactgctttgtacaaaaaatgctgacttgtggcttacacaagctccactaataaattttccaatagtcgagatgtatttgcctgagcgagtgatgcggcaatttgggcttcgccaatccattccaccaccttttcggcctacactacaggcgctgcatcgtattagtcgacgtggcagagaacgtgagaactgggaagagacacatcatgagtacattcaggaatgggaagcccgccgacagcgcatatttccagagtcagagcagtatgacccgtcttcttatgaggagtacctgcattggtacacaggggctacacggcggtatcttgtaccatcaatcagtgatgatgtggaagcaggatcttcattacagcctgatgactccattaatcttcattatcaagccaaggctcctatgatccgcaaagcagtaagccatattatctattcagttcctacgatcagtttctaaagttaattggacctaaatttgtttcagatacacgtgctgtcttttgcaagacttcaaatagtttttacaagcagtccatgcataatttaactaatatatttaacttgaaggctgctgattgttgtaggttgataaactgcatggtatggtaaagaaggccaagatagccatggcgtccacagctgatacaaccacacaagccttggtctttgagtttctgcatggctttcaagatgttcttcacgaccttggcgagatcaaggaaaatggtggttcagctactagtccacatgttgaatcagctgccactcaagacatgcctctacttttgctagaaactgaacagaacattgtggatgccgatcaagaagctcaacaccaggaagaggaagagcttcacatggtggatgatgcaacaatgacccttgagcctatggatgaggagaacaatgatttcaacaatgtcatctgtccatgtccttcactggagttggaggaacattgtcacttagctacaccagccatcgatgagtgtaatacagccactcctgctccagactctgtaattccacagcagaacactgattttgatcaagatggacatctggaaaatcctaatgaaatggaccagattgaactgatggtggaacctatatgtgtggatcacaatgattccgacaatgtgctctcatccagcccgtcagctcaggcactggaggagaattgtgaagtagcaaaggcagtcaatggaaatgtcgatccaaccacccaagttactggctcatctaccccacaacaggacacagatgtcaaactagttgctgaacaggaaaacccaggcacaacagagggcaactaa
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| CDS seq | atgtcttcaaagagaggaggaggtggccgccgtggtcgtggctgtggccgtgggagaagtgctttggctgaaaatgacatggactttcatgaaacctccacaccttcttccccaagtactacttctgataaagaggacaatgttgagtttactccgcagcaaagcccactaccttgtcttgtaagcccatcagtagagcatgtatccaacacattactcaatccaaagatcaaccaccgatcggacgcaatcttcggtgatcaggaatgggaagcccgccgacagcgcatatttccagagtcagagcagtatgacccgtcttcttatgaggagtacctgcattggtacacaggggctacacggcggtatcttgtaccatcaatcagtgatgatgtggaagcaggatcttcattacagcctgatgactccattaatcttcattatcaagccaaggctcctatgatccgcaaagcagttgataaactgcatggtatggtaaagaaggccaagatagccatggcgtccacagctgatacaaccacacaagccttggtctttgagtttctgcatggctttcaagatgttcttcacgaccttggcgagatcaaggaaaatggtggttcagctactagtccacatgttgaatcagctgccactcaagacatgcctctacttttgctagaaactgaacagaacattgtggatgccgatcaagaagctcaacaccaggaagaggaagagcttcacatggtggatgatgcaacaatgacccttgagcctatggatgaggagaacaatgatttcaacaatgtcatctgtccatgtccttcactggagttggaggaacattgtcacttagctacaccagccatcgatgagtgtaatacagccactcctgctccagactctgtaattccacagcagaacactgattttgatcaagatggacatctggaaaatcctaatgaaatggaccagattgaactgatggtggaacctatatgtgtggatcacaatgattccgacaatgtgctctcatccagcccgtcagctcaggcactggaggagaattgtgaagtagcaaaggcagtcaatggaaatgtcgatccaaccacccaagttactggctcatctaccccacaacaggacacagatgtcaaactagttgctgaacaggaaaacccaggcacaacagagggcaactaa
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| Protein seq | MSSKRGGGGRRGRGCGRGRSALAENDMDFHETSTPSSPSTTSDKEDNVEFTPQQSPLPCLVSPSVEHVSNTLLNPKINHRSDAIFGDQEWEARRQRIFPESEQYDPSSYEEYLHWYTGATRRYLVPSISDDVEAGSSLQPDDSINLHYQAKAPMIRKAVDKLHGMVKKAKIAMASTADTTTQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAATQDMPLLLLETEQNIVDADQEAQHQEEEELHMVDDATMTLEPMDEENNDFNNVICPCPSLELEEHCHLATPAIDECNTATPAPDSVIPQQNTDFDQDGHLENPNEMDQIELMVEPICVDHNDSDNVLSSSPSAQALEENCEVAKAVNGNVDPTTQVTGSSTPQQDTDVKLVAEQENPGTTEGN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0023050 | OsLima_02g0023050.01 | Chr02 | 24449765 | 24452341 | + | NAM | ||
| CDS seq | atgtcttcaaagagaggaggaggtggccgccgtggtcgtggctgtggccgtgggagaagtgctttggctgaaaatgacatggactttcatgaaacctccacaccttcttccccaagtactacttctgataaagaggacaatgttgagtttactccgcagcaaagcccactaccttgtcttgtaagcccatcagtagagcatgtatccaacacattactcaatccaaagatcaaccaccgatcggacgcaatcttcggtgatcaggaatgggaagcccgccgacagcgcatatttccagagtcagagcagtatgacccgtcttcttatgaggagtacctgcattggtacacaggggctacacggcggtatcttgtaccatcaatcagtgatgatgtggaagcaggatcttcattacagcctgatgactccattaatcttcattatcaagccaaggctcctatgatccgcaaagcagttgataaactgcatggtatggtaaagaaggccaagatagccatggcgtccacagctgatacaaccacacaagccttggtctttgagtttctgcatggctttcaagatgttcttcacgaccttggcgagatcaaggaaaatggtggttcagctactagtccacatgttgaatcagctgccactcaagacatgcctctacttttgctagaaactgaacagaacattgtggatgccgatcaagaagctcaacaccaggaagaggaagagcttcacatggtggatgatgcaacaatgacccttgagcctatggatgaggagaacaatgatttcaacaatgtcatctgtccatgtccttcactggagttggaggaacattgtcacttagctacaccagccatcgatgagtgtaatacagccactcctgctccagactctgtaattccacagcagaacactgattttgatcaagatggacatctggaaaatcctaatgaaatggaccagattgaactgatggtggaacctatatgtgtggatcacaatgattccgacaatgtgctctcatccagcccgtcagctcaggcactggaggagaattgtgaagtagcaaaggcagtcaatggaaatgtcgatccaaccacccaagttactggctcatctaccccacaacaggacacagatgtcaaactagttgctgaacaggaaaacccaggcacaacagagggcaactaa
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| Protein seq | MSSKRGGGGRRGRGCGRGRSALAENDMDFHETSTPSSPSTTSDKEDNVEFTPQQSPLPCLVSPSVEHVSNTLLNPKINHRSDAIFGDQEWEARRQRIFPESEQYDPSSYEEYLHWYTGATRRYLVPSISDDVEAGSSLQPDDSINLHYQAKAPMIRKAVDKLHGMVKKAKIAMASTADTTTQALVFEFLHGFQDVLHDLGEIKENGGSATSPHVESAATQDMPLLLLETEQNIVDADQEAQHQEEEELHMVDDATMTLEPMDEENNDFNNVICPCPSLELEEHCHLATPAIDECNTATPAPDSVIPQQNTDFDQDGHLENPNEMDQIELMVEPICVDHNDSDNVLSSSPSAQALEENCEVAKAVNGNVDPTTQVTGSSTPQQDTDVKLVAEQENPGTTEGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.102473 | 0.135445 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0592600 | RBH | 0.677532 | 1.201082 | 1.011998 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g37950 | RBH | 0.491615 | 0.462065 | 0.279044 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0592600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0023200 | RBH | 0.206047 | 6.497703 | 4.037936 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0023300 | RBH | 0.155912 | 1.941400 | 2.073900 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0023270 | RBH | 0.818447 | 0.000000 | 7.893093 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0023000 | RBH | 0.153669 | 0.189310 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0022880 | RBH | 2.300519 | 6.247840 | 8.683717 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0326400 | SBH | 5.1576995 | 15.754036 | 13.258028 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0022660 | RBH | 0.000000 | 0.319835 | 0.631273 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0403800 | RBH | 2.3374035 | 6.271439 | 16.8996145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019380 | SBH | 0.543627 | 0.056954 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0022880 | RBH | 0.102170 | 9.385285 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0023240 | RBH | 3.292064 | 40.408737 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0022940 | RBH | 0.133279 | 0.000000 | 0.232695 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0022750 | RBH | 0.119912 | 2.844231 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G023190 | RBH | 0.164066 | 2.350757 | 1.767399 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0023050 | RBH | 2.664229 | 9.893897 | 2.980643 |
