Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0019380 | OGI:01061450 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:20589257-20589475 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagttgtcctctgttgtggctgggttttcttgttcagcatctactatgacatccgtgccctgttctggggtagatgagccagtaacttgggtggctggatcgacattttcattgactgcctctgctacttcacaattctccaacagcgcctgagctgacgtgctggatgagagcacattgttggaatcattgtgatccacatacataggttccaccat |
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| CDS seq | atggtggaacctatgtatgtggatcacaatgattccaacaatgtgctctcatccagcacgtcagctcaggcgctgttggagaattgtgaagtagcagaggcagtcaatgaaaatgtcgatccagccacccaagttactggctcatctaccccagaacagggcacggatgtcatagtagatgctgaacaagaaaacccagccacaacagaggacaactaa |
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| Protein seq | MVEPMYVDHNDSNNVLSSSTSAQALLENCEVAEAVNENVDPATQVTGSSTPEQGTDVIVDAEQENPATTEDN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0019380 | OsLima_01g0019380.01 | Chr01 | 20589257 | 20589475 | - | NAM | ||
| CDS seq | atggtggaacctatgtatgtggatcacaatgattccaacaatgtgctctcatccagcacgtcagctcaggcgctgttggagaattgtgaagtagcagaggcagtcaatgaaaatgtcgatccagccacccaagttactggctcatctaccccagaacagggcacggatgtcatagtagatgctgaacaagaaaacccagccacaacagaggacaactaa
More
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| Protein seq | MVEPMYVDHNDSNNVLSSSTSAQALLENCEVAEAVNENVDPATQVTGSSTPEQGTDVIVDAEQENPATTEDN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.543627 | 0.056954 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0592600 | SBH | 0.677532 | 1.201082 | 1.011998 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g37950 | SBH | 0.491615 | 0.462065 | 0.279044 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0592600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020070 | RBH | 0.835872 | 5.832468 | 8.285028 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0032470 | RBH | 0.0 | 0.000000 | 0.214698 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020040 | RBH | 0.916947 | 3.674308 | 4.304666 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019400 | RBH | 0.297598 | 0.157861 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0031880 | RBH | 2.254815 | 2.975094 | 3.678634 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0326400 | RBH | 5.1576995 | 15.754036 | 13.258028 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019380 | RBH | 0.548600 | 0.0 | 1.522440 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0325100 | RBH | 0.1401165 | 0.118306 | 0.0857105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0031810 | RBH | 0.028753 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019290 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0032050 | RBH | 1.301510 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019310 | RBH | 0.758059 | 0.0 | 0.299344 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0019200 | RBH | 0.412370 | 3.711032 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G019710 | RBH | 0.317654 | 2.676164 | 4.388727 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019420 | RBH | 0.071857 | 24.027428 | 8.224408 |
