Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0021880 | OGI:02062580 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:23412210-23413468 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggggcggcgcgcgcgctgcctctgcctcctcctcctcctcctcgtcgtaggtggcggtttccacgtggccaacgcgcaggcgtcgccggcgccgccgcagacgggcacgagggcggtcaaccgcgccgtgtccaccgtcatcaccgtcgtcatcggcgtcttcttcatcctcgtcttcgtatgcgtcatcgtcaaccagtgctgcgactgcgactcctccgctggcgctggggctgggcaagggcagtcgtccgctgctcggcgccgccgcgggctcgacccggcggcggtggcggcgatcccggtcgtgccgtacgcggaggtcaggaagcacaggagcggcggcggcggcgcgctggagtgcgccgtgtgcctcaccgtgttcgacgacggggacgacctccgcctcctcccgcagtgctcccacgcgttccaccccgactgcatcgacccctggctcgagggccacgtcacctgcccgctgtgccgcgccaacctcgagaagcagccagcgccgtcgccgcctgccgtggagttctcctcctcgcctgctgcggccgcggcggcggcggaggagtcgcgtacgcccgaggccgcggcggtgcgggttgaggaggtggcggaggcgagcgacgaagaggagacgaggaggagggaggaggaggccgtggagctggagagtctgcgcgccgtgcggcgggcggcgaggatgccgaggtcgaactcgacggggcactcgctgtgcgcgctgccggcgccgcgcgcgccggggccgggcgacggctgtgaccacgagaggttcacggtgcggctgccgccgcacgtccgggaggaggtgctcaagtcgaggcgcctccggcacgccacgagcctcgtcctcggcatcaggggatcgagccgcgagggcagctcgaggggcggcggcgggagctggcacggcgcgcggcggtggccgtccttcctggcaaggacggtgtcgtgggcgcgcggcggcgtgggagcggacaccagcgcgaaggagacgccacgccgtgacgcggtctgatccgtgcaaagccggcgagattttgtgaaaaaaaaatttctctttttatgtagaggaattaatttaatttgttcgcgtgcgaaggctgaaaaaccttgtacatacaccaggttgtttgccatttgaaattattataattttgcttattagtagtaatcgtgtgcacgtaatgtacaaaccgtggcaaatatatttgaaatttcgtttgtttt
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| CDS seq | atggggcggcgcgcgcgctgcctctgcctcctcctcctcctcctcgtcgtaggtggcggtttccacgtggccaacgcgcaggcgtcgccggcgccgccgcagacgggcacgagggcggtcaaccgcgccgtgtccaccgtcatcaccgtcgtcatcggcgtcttcttcatcctcgtcttcgtatgcgtcatcgtcaaccagtgctgcgactgcgactcctccgctggcgctggggctgggcaagggcagtcgtccgctgctcggcgccgccgcgggctcgacccggcggcggtggcggcgatcccggtcgtgccgtacgcggaggtcaggaagcacaggagcggcggcggcggcgcgctggagtgcgccgtgtgcctcaccgtgttcgacgacggggacgacctccgcctcctcccgcagtgctcccacgcgttccaccccgactgcatcgacccctggctcgagggccacgtcacctgcccgctgtgccgcgccaacctcgagaagcagccagcgccgtcgccgcctgccgtggagttctcctcctcgcctgctgcggccgcggcggcggcggaggagtcgcgtacgcccgaggccgcggcggtgcgggttgaggaggtggcggaggcgagcgacgaagaggagacgaggaggagggaggaggaggccgtggagctggagagtctgcgcgccgtgcggcgggcggcgaggatgccgaggtcgaactcgacggggcactcgctgtgcgcgctgccggcgccgcgcgcgccggggccgggcgacggctgtgaccacgagaggttcacggtgcggctgccgccgcacgtccgggaggaggtgctcaagtcgaggcgcctccggcacgccacgagcctcgtcctcggcatcaggggatcgagccgcgagggcagctcgaggggcggcggcgggagctggcacggcgcgcggcggtggccgtccttcctggcaaggacggtgtcgtgggcgcgcggcggcgtgggagcggacaccagcgcgaaggagacgccacgccgtgacgcggtctga
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| Protein seq | MGRRARCLCLLLLLLVVGGGFHVANAQASPAPPQTGTRAVNRAVSTVITVVIGVFFILVFVCVIVNQCCDCDSSAGAGAGQGQSSAARRRRGLDPAAVAAIPVVPYAEVRKHRSGGGGALECAVCLTVFDDGDDLRLLPQCSHAFHPDCIDPWLEGHVTCPLCRANLEKQPAPSPPAVEFSSSPAAAAAAAEESRTPEAAAVRVEEVAEASDEEETRRREEEAVELESLRAVRRAARMPRSNSTGHSLCALPAPRAPGPGDGCDHERFTVRLPPHVREEVLKSRRLRHATSLVLGIRGSSREGSSRGGGGSWHGARRWPSFLARTVSWARGGVGADTSAKETPRRDAV |
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| Function | E3 ubiquitin-protein ligase ATL6 [UniProtKB/Swiss-Prot:Q8RXX9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0021880 | OsLima_02g0021880.01 | Chr02 | 23412210 | 23413468 | + | NAM | ||
| CDS seq | atggggcggcgcgcgcgctgcctctgcctcctcctcctcctcctcgtcgtaggtggcggtttccacgtggccaacgcgcaggcgtcgccggcgccgccgcagacgggcacgagggcggtcaaccgcgccgtgtccaccgtcatcaccgtcgtcatcggcgtcttcttcatcctcgtcttcgtatgcgtcatcgtcaaccagtgctgcgactgcgactcctccgctggcgctggggctgggcaagggcagtcgtccgctgctcggcgccgccgcgggctcgacccggcggcggtggcggcgatcccggtcgtgccgtacgcggaggtcaggaagcacaggagcggcggcggcggcgcgctggagtgcgccgtgtgcctcaccgtgttcgacgacggggacgacctccgcctcctcccgcagtgctcccacgcgttccaccccgactgcatcgacccctggctcgagggccacgtcacctgcccgctgtgccgcgccaacctcgagaagcagccagcgccgtcgccgcctgccgtggagttctcctcctcgcctgctgcggccgcggcggcggcggaggagtcgcgtacgcccgaggccgcggcggtgcgggttgaggaggtggcggaggcgagcgacgaagaggagacgaggaggagggaggaggaggccgtggagctggagagtctgcgcgccgtgcggcgggcggcgaggatgccgaggtcgaactcgacggggcactcgctgtgcgcgctgccggcgccgcgcgcgccggggccgggcgacggctgtgaccacgagaggttcacggtgcggctgccgccgcacgtccgggaggaggtgctcaagtcgaggcgcctccggcacgccacgagcctcgtcctcggcatcaggggatcgagccgcgagggcagctcgaggggcggcggcgggagctggcacggcgcgcggcggtggccgtccttcctggcaaggacggtgtcgtgggcgcgcggcggcgtgggagcggacaccagcgcgaaggagacgccacgccgtgacgcggtctga
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| Protein seq | MGRRARCLCLLLLLLVVGGGFHVANAQASPAPPQTGTRAVNRAVSTVITVVIGVFFILVFVCVIVNQCCDCDSSAGAGAGQGQSSAARRRRGLDPAAVAAIPVVPYAEVRKHRSGGGGALECAVCLTVFDDGDDLRLLPQCSHAFHPDCIDPWLEGHVTCPLCRANLEKQPAPSPPAVEFSSSPAAAAAAAEESRTPEAAAVRVEEVAEASDEEETRRREEEAVELESLRAVRRAARMPRSNSTGHSLCALPAPRAPGPGDGCDHERFTVRLPPHVREEVLKSRRLRHATSLVLGIRGSSREGSSRGGGGSWHGARRWPSFLARTVSWARGGVGADTSAKETPRRDAV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0572200 | RBH | 0.0 | 0.190835 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g36300 | RBH | 0.0 | 0.128352 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0572200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021950 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0022050 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010650 | SBH | 0.949167 | 1.827162 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021750 | RBH | 0.0 | 0.089431 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0021710 | RBH | 0.0 | 2.747098 | 0.893609 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0449900 | SBH | 1.2192925 | 6.0871815 | 9.3304095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0021450 | RBH | 0.0 | 0.509181 | 0.093029 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0386400 | RBH | 0.4504225 | 1.6986045 | 0.3505785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015090 | RBH | 0.132769 | 0.014571 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0021620 | RBH | 0.144627 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0022080 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021790 | RBH | 0.0 | 0.0 | 0.268222 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0021610 | RBH | 0.0 | 1.101405 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G022070 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021830 | RBH | 0.0 | 0.0 | 0.0 |
