Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0021170 | OGI:02060680 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:22654931-22660989 | ||||||||
| Gene Symbol | ARF7, OsARF7 | ||||||||||
| DNA seq | aaataaataataaaaataaaacagcagcagcaacacacccccttctctctcttcctcttctccccgcgcaagccaaagccacagccagcgaaggcggcaagccaccaccaccacctcctcctcacgccaccgcggcctcctcctccggccaccgcgcgctcacctcgggcagcggccgcagcggcgcgcgctctccggtgtgggatctccgagttttttttttttcgttttccctctgaattccgcggcggggaggccggatctgcggggaggggcatggggtgatcagatcgggacgcgcacctcgctctcctcctcctcccctcctgaattcctctcgtcgggatggctggctccgtcgttgctgctgctgctgccggcggcggtggcacaggttcgtgtcccgcgctttctcttcgcgtttttcgcctcggctggttgtgtttgtgtgtgtgtgtgtgtatgtatgtgtgtgtgtgtgtgtttttggtctgaattggggttgtgaagttagctggtgagtcgagtgcttggtgagctagcaagagagagagagacgtggacttggggggcagttgacttgttcgtctaggggggagagagagaggggttgtggtgtggtgtggaattggttggaattcgaggcgactcggcattgtttaccataaaaagcgccttttctcttccatttcttgtccaattttgtcgtcttgttttcctttttaggtcggagatttgttcctgttgtgctgattcgtgcgaaaactcgtaattccgctagtatggccactgctctagtaattctcttcggatgcacgcgaattccgatctgtgaaatgggggagacacatgtgcaattacggatctgagaacctgttttgtagtgacagcgtctttgtttctctctttttttttttttgaaaaaaaatggttaggttggcaattggttctaccacagagacgcaaatgagaaaaatgttggatctatgtgtgtactgcttgtttagatttacaattctggagcaattatggtgtagttaactcatgatcaacggttaattagaccTttttggttgccaccatgacatgaggggaaatttcgcttgattttgtatggtgatgtttttattttcctaaaaaaagagagtaaaaattcctctgtgcagggagctcttgcgatgcgttgtacagggagctatggcatgcttgcgctgggccgttggtcacagtgcctcgccaaggcgaattggtttactacttcccccagggccatatggaacaggtaaatctcactataatatatcaatgcttgcttgctctctatcatgtcctaaaattaaggagtttgctactaatttgtgccataagaatgtcacttgttccttgtgttgacacacagcagtatggttttgtttcttcggcaatgtagttattttagtacgtctttcctttgaactaatcttatgtctttcctttgaactgatcttttcatgctttttctatagcttgaggcatctacagaccaacagcttgaccagcatctgcctttgtttaacctgccatctaagatcctctgcaaagtggtcaatgtagaacttagggtaagcattttccttttctggtctgcagtagtttcacgctatatgaaagttcctctggattttctagcaagagtattacttgtgtacctttcatcctgtagtttactcaccttttttcctctggtatgcaggctgaaaccgattcagatgaggtttatgctcaaattatgctgcaaccagaagcagatgtgagtatgcttttcttatatatttttcttctaaataatagttgtccttttcagctcatttgagctttttatcaagctgtaatgtagtgatcttgctcatgtcacagtcctttctttcttctaatcgtcttctctcatattctcacataaattctattgccttggaattttatatgggtatgtacttattcattttcctttattctgttgttagcaaaatgaactcaccagcccaaaacctgagccacatgaacctgaaaaatgcaatgtccattccttctgcaagactttgactgcttcagatacaagcacccatggtggattttcagttcttaggaggcatgcagaagaatgtcttcctcccctggttaggaccaaaaatatttttaactcccttcatatgcggataatcacattggatatttgctatctgtaacatcttctgtatgtggtatggtttatctttaggacatgactcagaatccaccatggcaagagcttgtggctagagatctccatggaaacgagtggcatttccgtcacatctttcgaggtaagttataggaagaacatagtaatagtgaatgtagttccttctgagcttccataatgaaagggcttccccaaaagaaattggtggcatattagtaatgctttccatggtgattttgttactatgtctcacaaagggtccccccaccactcccttattttaggacaacctaggaggcatctgcttacaactggctggagtgtttttgttagctcaaaaagattagttgctggtgacgcattcatctttctgaggtatgcaggggaacatttggaaggcttgaagccatttaacacattttgcttatttgcgtttgtttcctgggtctgcggagttcaggatgaatattctatatcactattgctgttgtaaatacggtgttcatataacagaggtgagaatggagagctacgagttggtgtcaggaggctcatgaggcaactaaataacatgccatcatcagtaatatcaagtcatagtatgcatcttggagtcctagcaactgcatcacatgctatatccaccggaactctcttttctgttttctacaaaccaaggtttgattcttctaatcttatcattgtacctaagttcttcaccaatgctttatgtacctctagcattttcttatatacagatgcaatgtacttcgtaataaaatatgcatgatgttatctgatatcctgagacgattccctggatgcccatttaaattttcacttatgatattgctctgttgagtgcttatagaattatatgtaacttttcctcacagaattacattccattttaggaatatatttttgtgtgagtttgtttgataggtcttatttattttcttgtgctaaacatatgttgtaccattacattctaataagtcagtgtttgttcatctaatttgggtttcagaacaagtcagtctgagtttgttgtgagtgctaacaagtaccttgaagctaaaaacagcaagatatctgttggaatgaggtttaagatgagattcgagggcgatgaagctcctgaaagaaggtaatttaacgtctattttccatccactggtttttcattggttcaaaaattgtgtgggcacatctcataaatatttcttcatggtttataggtttagtggaacaattattggtgttgggagcatgtcaacgtctccatgggcaaattctgactggagatctttgaaggtaattaagattttcaaatttgtgggcaggatgcccttcttcctctgcatctgctttctggaacatttgagggcatatgtttcttagaaaatgcctgcagttgtgttgtcatgttttctcttgtatatcttccagaatcacaacccatgtgttcaccactgataggtccaatgggatgagccttctgtggttcctcgtccagatagagtttcaccatgggaactagagccacttgctgtgagtaattcacagccatcacctcagccaccggcaagaaataagcgggctcggcctcctgcttcgagttcaattgctccagaactacctccggtcttcggtatgtttttactaagatattgctacagattgtgcttctgctttaaggtgatagctagtactgttttagcaatagaaaccttgcagtgtactgcttgtctgtctcttcaattgctgtctgctttgcatgtctaacctcttctgttcctaacttaggtttgtggaaatcttcagctgagtccacacaaggcttctcattttcgggactacagcgaacacaggaactatatccttcaagccccaatccgatcttctcaacatcattaaatgttggattcagtacaaagaatgagccatctgctctaagcaacaagcatttttactggccaatgagagagacaagagccgactcttactctgctagcatcagcaaagttccatctgaaaagaagcaagagcctagttcggctggctgcagattgtttggaatcgagataagctctgctgtggaagctacatctccactggctgctgtttctggtgttggtcaagaccaaccagctgcctcagtagatgctgagtctgatcagctctcacaaccatcacatgccaacaaatctgatgctccagcggcaagcagtgagccatctccccatgagactcagagtcggcaagtgaggagctgcaccaaggtaatgagggttatttttgcttgcaatactcaatatcctcttgtggacagcggagtaattaataattggtcttcttgcaggtcatcatgcaaggaatggcagttggaagggcagtggacctgacaaggctccatggatatgatgatcttcgctgcaagttagaagagatgtttgatatccaaggagagctctctgctagcctaaagaaatggaaggttgtttacacagatgatgaggatgatatgatgctggttggggatgacccttggccgtatgtacccttatccctgttcaattaattacttcattttttgaattccttgagccttaactaattacatttcgattgttgccactgcagtgaattttgcagcatggtgaaaaggatatacatctacacctacgaggaagccaagcaacttactcccaagtcgaagctgccgatcattggcgacgccatcaagccaaacccaaacaaacaatcgcccgagtctgacatgcctcacagtgacctggacagcactgcccccgtcaccgataaggattgctgaatgctaacctggccatatttcccttcagttttttttttccatcttgggatgttgagcatgggggccaatgcccatgatccttgggacttctaagagttatccgctggttggttcgtgggcccgaaggacaccgtctgcatctaccatggttcatgcatcatgcatagctgcccctggaccagtgtggatcccatgccaggaaggatggctggggaggcagcatttccatcacctggcactccctgcgtgattggcccatccgtgtttaattctgctgtgtGggggGTAGTAGGAGCCATGGCATCCTTTGTCCAGTGCTCAGTTTTGGTAAAGTGGTGACTGGTGGTAGACCTGCAAGAACGGGGCCCGGGCCTCGCCATCTCTCGCTGCACCAGTAAATAGAGTGTCAAGCATTCATGTTCCTTTCTTCCTGCAATGCATGGAGTATCATCATCCGTAGCTAAGCATCAGTTCTTCTccccccccccccccttgcatcctgttcgcagctccggtgccgccactggagctgttcgttttaacccagcggcattccttcttttcttttttttttaccgggtggtgtttttgctttcggaagtcggagcatttgctaagttttttttcctacgctgtgctttcctcctgctgaatgtacctgtgcttttcctcctcgtggaagccatccaaatctatgacaattttctgtactcacttacctgcatgtacataggaatggaaatggaactggactgaactgaacctgatatgccgcttctcatcattgtgatgctgttctttttctgtgatagtggagttctttttctgctgtggcgtgatgggggtaatctgcgtgccaaggcctttttgtttccctttgctttgtactagtggagaatatgtctttatggctaatctgtgatgatgtgctcatctcctgacataaggcaaggcttgctctgcctgtcggaatgattgttctgcgtgccaatgccgtgacct
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| CDS seq | atggctggctccgtcgttgctgctgctgctgccggcggcggtggcacagggagctcttgcgatgcgttgtacagggagctatggcatgcttgcgctgggccgttggtcacagtgcctcgccaaggcgaattggtttactacttcccccagggccatatggaacagcttgaggcatctacagaccaacagcttgaccagcatctgcctttgtttaacctgccatctaagatcctctgcaaagtggtcaatgtagaacttagggctgaaaccgattcagatgaggtttatgctcaaattatgctgcaaccagaagcagatcaaaatgaactcaccagcccaaaacctgagccacatgaacctgaaaaatgcaatgtccattccttctgcaagactttgactgcttcagatacaagcacccatggtggattttcagttcttaggaggcatgcagaagaatgtcttcctcccctggacatgactcagaatccaccatggcaagagcttgtggctagagatctccatggaaacgagtggcatttccgtcacatctttcgaggacaacctaggaggcatctgcttacaactggctggagtgtttttgttagctcaaaaagattagttgctggtgacgcattcatctttctgagaggtgagaatggagagctacgagttggtgtcaggaggctcatgaggcaactaaataacatgccatcatcagtaatatcaagtcatagtatgcatcttggagtcctagcaactgcatcacatgctatatccaccggaactctcttttctgttttctacaaaccaagaacaagtcagtctgagtttgttgtgagtgctaacaagtaccttgaagctaaaaacagcaagatatctgttggaatgaggtttaagatgagattcgagggcgatgaagctcctgaaagaaggtttagtggaacaattattggtgttgggagcatgtcaacgtctccatgggcaaattctgactggagatctttgaaggtccaatgggatgagccttctgtggttcctcgtccagatagagtttcaccatgggaactagagccacttgctgtgagtaattcacagccatcacctcagccaccggcaagaaataagcgggctcggcctcctgcttcgagttcaattgctccagaactacctccggtcttcggtttgtggaaatcttcagctgagtccacacaaggcttctcattttcgggactacagcgaacacaggaactatatccttcaagccccaatccgatcttctcaacatcattaaatgttggattcagtacaaagaatgagccatctgctctaagcaacaagcatttttactggccaatgagagagacaagagccgactcttactctgctagcatcagcaaagttccatctgaaaagaagcaagagcctagttcggctggctgcagattgtttggaatcgagataagctctgctgtggaagctacatctccactggctgctgtttctggtgttggtcaagaccaaccagctgcctcagtagatgctgagtctgatcagctctcacaaccatcacatgccaacaaatctgatgctccagcggcaagcagtgagccatctccccatgagactcagagtcggcaagtgaggagctgcaccaaggtcatcatgcaaggaatggcagttggaagggcagtggacctgacaaggctccatggatatgatgatcttcgctgcaagttagaagagatgtttgatatccaaggagagctctctgctagcctaaagaaatggaaggttgtttacacagatgatgaggatgatatgatgctggttggggatgacccttggcctgaattttgcagcatggtgaaaaggatatacatctacacctacgaggaagccaagcaacttactcccaagtcgaagctgccgatcattggcgacgccatcaagccaaacccaaacaaacaatcgcccgagtctgacatgcctcacagtgacctggacagcactgcccccgtcaccgataaggattgctga
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| Protein seq | MAGSVVAAAAAGGGGTGSSCDALYRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFNLPSKILCKVVNVELRAETDSDEVYAQIMLQPEADQNELTSPKPEPHEPEKCNVHSFCKTLTASDTSTHGGFSVLRRHAEECLPPLDMTQNPPWQELVARDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSQSEFVVSANKYLEAKNSKISVGMRFKMRFEGDEAPERRFSGTIIGVGSMSTSPWANSDWRSLKVQWDEPSVVPRPDRVSPWELEPLAVSNSQPSPQPPARNKRARPPASSSIAPELPPVFGLWKSSAESTQGFSFSGLQRTQELYPSSPNPIFSTSLNVGFSTKNEPSALSNKHFYWPMRETRADSYSASISKVPSEKKQEPSSAGCRLFGIEISSAVEATSPLAAVSGVGQDQPAASVDAESDQLSQPSHANKSDAPAASSEPSPHETQSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKSKLPIIGDAIKPNPNKQSPESDMPHSDLDSTAPVTDKDC |
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| Function | Auxin response factor 7 [UniProtKB/Swiss-Prot:Q6YVY0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0021170 | OsLima_02g0021170.01 | Chr02 | 22654931 | 22660989 | + | NAM | ||
| CDS seq | atggctggctccgtcgttgctgctgctgctgccggcggcggtggcacagggagctcttgcgatgcgttgtacagggagctatggcatgcttgcgctgggccgttggtcacagtgcctcgccaaggcgaattggtttactacttcccccagggccatatggaacagcttgaggcatctacagaccaacagcttgaccagcatctgcctttgtttaacctgccatctaagatcctctgcaaagtggtcaatgtagaacttagggctgaaaccgattcagatgaggtttatgctcaaattatgctgcaaccagaagcagatcaaaatgaactcaccagcccaaaacctgagccacatgaacctgaaaaatgcaatgtccattccttctgcaagactttgactgcttcagatacaagcacccatggtggattttcagttcttaggaggcatgcagaagaatgtcttcctcccctggacatgactcagaatccaccatggcaagagcttgtggctagagatctccatggaaacgagtggcatttccgtcacatctttcgaggacaacctaggaggcatctgcttacaactggctggagtgtttttgttagctcaaaaagattagttgctggtgacgcattcatctttctgagaggtgagaatggagagctacgagttggtgtcaggaggctcatgaggcaactaaataacatgccatcatcagtaatatcaagtcatagtatgcatcttggagtcctagcaactgcatcacatgctatatccaccggaactctcttttctgttttctacaaaccaagaacaagtcagtctgagtttgttgtgagtgctaacaagtaccttgaagctaaaaacagcaagatatctgttggaatgaggtttaagatgagattcgagggcgatgaagctcctgaaagaaggtttagtggaacaattattggtgttgggagcatgtcaacgtctccatgggcaaattctgactggagatctttgaaggtccaatgggatgagccttctgtggttcctcgtccagatagagtttcaccatgggaactagagccacttgctgtgagtaattcacagccatcacctcagccaccggcaagaaataagcgggctcggcctcctgcttcgagttcaattgctccagaactacctccggtcttcggtttgtggaaatcttcagctgagtccacacaaggcttctcattttcgggactacagcgaacacaggaactatatccttcaagccccaatccgatcttctcaacatcattaaatgttggattcagtacaaagaatgagccatctgctctaagcaacaagcatttttactggccaatgagagagacaagagccgactcttactctgctagcatcagcaaagttccatctgaaaagaagcaagagcctagttcggctggctgcagattgtttggaatcgagataagctctgctgtggaagctacatctccactggctgctgtttctggtgttggtcaagaccaaccagctgcctcagtagatgctgagtctgatcagctctcacaaccatcacatgccaacaaatctgatgctccagcggcaagcagtgagccatctccccatgagactcagagtcggcaagtgaggagctgcaccaaggtcatcatgcaaggaatggcagttggaagggcagtggacctgacaaggctccatggatatgatgatcttcgctgcaagttagaagagatgtttgatatccaaggagagctctctgctagcctaaagaaatggaaggttgtttacacagatgatgaggatgatatgatgctggttggggatgacccttggcctgaattttgcagcatggtgaaaaggatatacatctacacctacgaggaagccaagcaacttactcccaagtcgaagctgccgatcattggcgacgccatcaagccaaacccaaacaaacaatcgcccgagtctgacatgcctcacagtgacctggacagcactgcccccgtcaccgataaggattgctga
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| Protein seq | MAGSVVAAAAAGGGGTGSSCDALYRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFNLPSKILCKVVNVELRAETDSDEVYAQIMLQPEADQNELTSPKPEPHEPEKCNVHSFCKTLTASDTSTHGGFSVLRRHAEECLPPLDMTQNPPWQELVARDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSQSEFVVSANKYLEAKNSKISVGMRFKMRFEGDEAPERRFSGTIIGVGSMSTSPWANSDWRSLKVQWDEPSVVPRPDRVSPWELEPLAVSNSQPSPQPPARNKRARPPASSSIAPELPPVFGLWKSSAESTQGFSFSGLQRTQELYPSSPNPIFSTSLNVGFSTKNEPSALSNKHFYWPMRETRADSYSASISKVPSEKKQEPSSAGCRLFGIEISSAVEATSPLAAVSGVGQDQPAASVDAESDQLSQPSHANKSDAPAASSEPSPHETQSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKSKLPIIGDAIKPNPNKQSPESDMPHSDLDSTAPVTDKDC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.430690 | 0.322092 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0557200 | RBH | 2.310193 | 2.278573 | 4.440837 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35140 | RBH | 1.452808 | 1.412048 | 1.045288 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0557200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021230 | RBH | 1.047556 | 23.984810 | 13.169680 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021310 | RBH | 0.486426 | 5.560241 | 3.495675 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021300 | RBH | 2.010610 | 31.212339 | 15.140638 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021040 | RBH | 0.261424 | 1.226090 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020960 | RBH | 7.287668 | 34.012310 | 36.323898 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0408100 | SBH | 4.725002 | 13.9637 | 3.2096425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020700 | RBH | 0.405696 | 1.770365 | 2.143976 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0436800 | SBH | 6.3481835 | 8.433467 | 22.739783 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0014350 | RBH | 0.287175 | 0.839113 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020910 | RBH | 0.933475 | 21.195974 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021360 | RBH | 12.178769 | 29.786707 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021060 | RBH | 1.371332 | 1.773113 | 2.177823 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020890 | RBH | 0.582246 | 25.562094 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021320 | RBH | 0.537870 | 12.845299 | 11.459402 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021070 | RBH | 1.135256 | 28.076780 | 12.831821 |
