Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0020880 | OGI:02001240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:22420283-22424943 | ||||||||
| Gene Symbol | XIK1, OsXIK1 | ||||||||||
| DNA seq | ctactgaagctctgagaactgagatgacctgaaaattctgcaatttatcaggctccgttttgaatgtcaggcaaacagtaagcaattctcagcttatctcatgaacaatttcaaaaatgataaaaccaaaccgttttaagcagctactacttatcatcactgaaacataccaacacaaggagagcagagacaaaagatgcatctgaaaactttgatactaaacatacaattatacagtatttgctagaataggagaacaagaagcctcattgccatgtagtcagagaaaatggtagccatgtataccatccatcataaatcttagagattcgtattacaatttacaacaaagcagattgatcaaacaaggtagcatagtaagcacaagaacatcaccagcaacacgtattagggtcgtgtacaaaatgcaggtatgtttgacaaccacgcaattaacaccaacgaagtagagagaacacaaatcatcatacaagtgatgctttataatacttgacaagttgacattaacaggtgcaatagactgacctacctatggtgtgaattgccacattcttgtggggaaaaaaccctgagcaacatgagaaacagcaattttctgacaacattcactggtagtacgcagggatgattatgtcaacatgtagatggtcaggattgctaggtccttcagctgtagaaaacatccgagttacatgttgcattgttggacgacgtgatgggttggggtccaagcactggacagcagccatgatcactctaaatatttcacttgctgtctcagctttaggaagtgggatccgggcgtccaacaaatccttcaatgttgtactttccttggccatggagaaggacaaaaggaaatcaccaggatgatgccccatgaacagctcaaagacaagcactccgaagctataaacatcgcatttctctgtcacccttgttgtgtatgcaagctctgccatgtaaaaatttaagactttgtttcaacaaatttgcatatgtaaatagtatagaaggcattcgatgctatttttacaaaatgagatgcaaatttgcctaattgtatctaatatactactatgaatcaaagatatactagtaagacgaatactttaacagttagctcgaatatttgtcagagttacaaactaatatacaaaaggacaaagcaactgatttagtacaaatttacctggggcaaggtaacctttggtcccagcaagcttcgtgcagttcgatgcctccacatctagaactttggctataccaaaatcagatatgcaagctctgaattcctgatcgagcaaaatgttgttgcttgttatatctcgatggactatgggtgcaaagcaatcatgatgtatgtaagacaaagcattagcaacatctttgacaatacttatccttcgcatccaatccaattcaatcgcaatgttatggttctccaaatatcttgacaagcttcctctatccatgtattcgtagacaagaaatttgccgtggactgaagaacagtacccaaagagcttcacaatatttcgatgccgaattctcgtcaaagcatctatttctcgcttaaatattagctcgtcatattccatcatatgaattttctttactgcaaatatctcacctgttggtaactgagctctgtagacagatccatttcccccagttccaatgcagtgagtttcgttgaaatattttgttgtttcaaaaatctgcctgcatgcttctcctccctcaaagttccagactgaaaacacttttgcgtctccaactccattttcgctttgttccccatatttcttccttttgcattgccatgccactagtgacatgataaacacaatagacatgccagcagcaccaactataccaagtaaaatggatttgaatttctttccctggccacctttctgattaaggtcgcaagggggtaaagctttgactgtaccacacaactttttattgtgcatgaaccactcaatcggagcttcttccaagaagttaatatgtggcactggcccttccaaattattatatgatacatccagggatgagagactgatcataccctgaaatgatgatggtatgctgccgttcagtgtgttgtgtgaaagattcagagcttcgagcatgctcaaagcacccagctgacttggtatgatcccagaaaatgaattgtcacttagatccaacaattcttggaggcttaccaacatccctagtttaacaggaatgcttccatcgaggcgattatggcctagccttagtaatctaagtttcaaacagttctcaatcgatccatgtatctgtccacttaggttgtttgatgacaagtctaaatactccaaattttgtagagagcctacttcctttggtatggttccctggagcatgttgtttgcaaggctcaaattgaatagagacactacgttacaaatttctggtggaatgtgtccttcaatttcattcgatgaaacatcaagtctccctaactgagacaatttccccatgctcgatggtatgactccagtaatacgattatttgatgcacgtagagtggtaagtttggcgcactcaccccagcgatgagataattgtccatatagtttatttgagctcatgtcaatatagacaaggtttggatgaaggcccatctcggagatatctccttcaagttgatttcgctcaagacgaactctaaccagggttttgcagtttagcaagcttgttggcaatggcccaaccaggttgttatcctgagcagtgaaattctgtagctggcctccagcgcacagacccaatggtaattcaccagaaaggttgttttgatcgatatgcaaaatatttagattcattaagctgctaatttctttaggaatggatccagaaagttggttagaacgaatatgtaaggcagtgagtttagtcaaattccctaagctgttcgggatggaacctgtgagcatgttttcactaaggtataagttctctaaatttaccaagttacctagttcttgagaaatacacccagaaagttggtttctccaaacagataaggtggagagtctaggcaaattccctaagctgtttgggatggaacctgtgagcatgtttccagaaaggctcaagatactgagtttagtgaaattccctatgttgtttgggatgaaacctgtgagcacgttgtcataaagtgataaattctttaagcccaccaagtaacctagttcttgaggaatgtgcccggaaagttgatttctagaaagatccaagaaagagagtttagtcaaattccctaagctattcgggatggaacctgtgagcatgttttcactcagatataagctctctaaattcaacattttacctagttcttgagaaatgtacccagatagttggtttctccaaagagataagatggagagtttagtcaaattacaaatgttatttgggatagaacccgtcaaggtgtttccagaaaggctcaagacactaagttcggtcaaattccctaagctgtttgggatggaacctatgagcttgttatcgtaaagttgtaggtcctttaagttcaacagggaacctagttcttgaggaatgtgccaagaaagtttgttgctttgaagatacaagaaacagagtttagccaaattccctaagttgtttggaatgtgcccggaaagttgattagaattaagttttaaggacctcaacctcactaaattaccaatttgctccggaatatgtccagagaggttattatctgaaagatccaaggacttgagctcctttaagttaatgatcttggttggaatggaatcaacaagactgttttgactaagattaaggtattctaggctcactaaatctcccagctcatggggaattggaccagttaattggttactggatagtgctaaaacctttagatttgacaaagatgatttattgttatatttacctggcttgtttgtcatgaacaagctgtctagacgaccaataatgttgttgttggacaaatccaatctaatcaacttactgaggaacccaatttcagaaggtatatgaccacccagttgattgcttgacaagtttaggctcacaagcctttttagactacatatttcctttggtattgaactcgaaagaaaattattgcttagcactaagaacctcagctttgttaaagatgttaaacctagttggaataaggagccccttatctgatttttgtgcaggatcaaggctctgagctctttgagagacatgatactctgagggatcatccctgtaagcctgttgtgtgaaaggttgatgcttgtcagggtcgtcagggccgagaagttgagggcctccagtgagcctctaagcctcactccgtgcagagtgatcttggtgatcaccctttgcccttgtagtgtgccacacctgatgccacgccagttgttgcatggccatgccttgctatcccacgactgcaggggttgctgggtttgcagggtggtcttccaggcaataagcgctgcagcttgctcatcgatggatggcacggcaatggcatgaaggagaacaagtgaggatagtagtatacctaatggcaggatcaatttctggggagataagtgttccat
More
|
||||||||||
| CDS seq | atggaacacttatctccccagaaattgatcctgccattaggtatactactatcctcacttgttctccttcatgccattgccgtgccatccatcgatgagcaagctgcagcgcttattgcctggaagaccaccctgcaaacccagcaacccctgcagtcgtgggatagcaaggcatggccatgcaacaactggcgtggcatcaggtgtggcacactacaagggcaaagggtgatcaccaagatcactctgcacggagtgaggcttagaggctcactggaggccctcaacttctcggccctgacgaccctgacaagcatcaacctttcacacaacaggcttacagggatgatccctcagagtatcatgtctctcaaagagctcagagccttgatcctgcacaaaaatcagataaggggctccttattccaactaggtttaacatctttaacaaagctgaggttcttagtgctaagcaataattttctttcgagttcaataccaaaggaaatatgtagtctaaaaaggcttgtgagcctaaacttgtcaagcaatcaactgggtggtcatataccttctgaaattgggttcctcagtaagttgattagattggatttgtccaacaacaacattattggtcgtctagacagcttgttcatgacaaacaagccaggtaaatataacaataaatcatctttgtcaaatctaaaggttttagcactatccagtaaccaattaactggtccaattccccatgagctgggagatttagtgagcctagaataccttaatcttagtcaaaacagtcttgttgattccattccaaccaagatcattaacttaaaggagctcaagtccttggatctttcagataataacctctctggacatattccggagcaaattggtaatttagtgaggttgaggtccttaaaacttaattctaatcaactttccgggcacattccaaacaacttagggaatttggctaaactctgtttcttgtatcttcaaagcaacaaactttcttggcacattcctcaagaactaggttccctgttgaacttaaaggacctacaactttacgataacaagctcataggttccatcccaaacagcttagggaatttgaccgaacttagtgtcttgagcctttctggaaacaccttgacgggttctatcccaaataacatttgtaatttgactaaactctccatcttatctctttggagaaaccaactatctgggtacatttctcaagaactaggtaaaatgttgaatttagagagcttatatctgagtgaaaacatgctcacaggttccatcccgaatagcttagggaatttgactaaactctctttcttggatctttctagaaatcaactttccgggcacattcctcaagaactaggttacttggtgggcttaaagaatttatcactttatgacaacgtgctcacaggtttcatcccaaacaacatagggaatttcactaaactcagtatcttgagcctttctggaaacatgctcacaggttccatcccaaacagcttagggaatttgcctagactctccaccttatctgtttggagaaaccaactttctgggtgtatttctcaagaactaggtaacttggtaaatttagagaacttataccttagtgaaaacatgctcacaggttccatcccgaacagcttagggaatttgactaaactcactgccttacatattcgttctaaccaactttctggatccattcctaaagaaattagcagcttaatgaatctaaatattttgcatatcgatcaaaacaacctttctggtgaattaccattgggtctgtgcgctggaggccagctacagaatttcactgctcaggataacaacctggttgggccattgccaacaagcttgctaaactgcaaaaccctggttagagttcgtcttgagcgaaatcaacttgaaggagatatctccgagatgggccttcatccaaaccttgtctatattgacatgagctcaaataaactatatggacaattatctcatcgctggggtgagtgcgccaaacttaccactctacgtgcatcaaataatcagcttcagtag
More
|
||||||||||
| Protein seq | MEHLSPQKLILPLGILLSSLVLLHAIAVPSIDEQAAALIAWKTTLQTQQPLQSWDSKAWPCNNWRGIRCGTLQGQRVITKITLHGVRLRGSLEALNFSALTTLTSINLSHNRLTGMIPQSIMSLKELRALILHKNQIRGSLFQLGLTSLTKLRFLVLSNNFLSSSIPKEICSLKRLVSLNLSSNQLGGHIPSEIGFLSKLIRLDLSNNNIIGRLDSLFMTNKPGKYNNKSSLSNLKVLALSSNQLTGPIPHELGDLVSLEYLNLSQNSLVDSIPTKIINLKELKSLDLSDNNLSGHIPEQIGNLVRLRSLKLNSNQLSGHIPNNLGNLAKLCFLYLQSNKLSWHIPQELGSLLNLKDLQLYDNKLIGSIPNSLGNLTELSVLSLSGNTLTGSIPNNICNLTKLSILSLWRNQLSGYISQELGKMLNLESLYLSENMLTGSIPNSLGNLTKLSFLDLSRNQLSGHIPQELGYLVGLKNLSLYDNVLTGFIPNNIGNFTKLSILSLSGNMLTGSIPNSLGNLPRLSTLSVWRNQLSGCISQELGNLVNLENLYLSENMLTGSIPNSLGNLTKLTALHIRSNQLSGSIPKEISSLMNLNILHIDQNNLSGELPLGLCAGGQLQNFTAQDNNLVGPLPTSLLNCKTLVRVRLERNQLEGDISEMGLHPNLVYIDMSSNKLYGQLSHRWGECAKLTTLRASNNQLQ |
||||||||||
| Function | Probable leucine-rich repeat receptor-like protein kinase At1g35710 [UniProtKB/Swiss-Prot:Q9LP24] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0020880 | OsLima_02g0020880.01 | Chr02 | 22420283 | 22424943 | - | NAM | ||
| CDS seq | atggaacacttatctccccagaaattgatcctgccattaggtatactactatcctcacttgttctccttcatgccattgccgtgccatccatcgatgagcaagctgcagcgcttattgcctggaagaccaccctgcaaacccagcaacccctgcagtcgtgggatagcaaggcatggccatgcaacaactggcgtggcatcaggtgtggcacactacaagggcaaagggtgatcaccaagatcactctgcacggagtgaggcttagaggctcactggaggccctcaacttctcggccctgacgaccctgacaagcatcaacctttcacacaacaggcttacagggatgatccctcagagtatcatgtctctcaaagagctcagagccttgatcctgcacaaaaatcagataaggggctccttattccaactaggtttaacatctttaacaaagctgaggttcttagtgctaagcaataattttctttcgagttcaataccaaaggaaatatgtagtctaaaaaggcttgtgagcctaaacttgtcaagcaatcaactgggtggtcatataccttctgaaattgggttcctcagtaagttgattagattggatttgtccaacaacaacattattggtcgtctagacagcttgttcatgacaaacaagccaggtaaatataacaataaatcatctttgtcaaatctaaaggttttagcactatccagtaaccaattaactggtccaattccccatgagctgggagatttagtgagcctagaataccttaatcttagtcaaaacagtcttgttgattccattccaaccaagatcattaacttaaaggagctcaagtccttggatctttcagataataacctctctggacatattccggagcaaattggtaatttagtgaggttgaggtccttaaaacttaattctaatcaactttccgggcacattccaaacaacttagggaatttggctaaactctgtttcttgtatcttcaaagcaacaaactttcttggcacattcctcaagaactaggttccctgttgaacttaaaggacctacaactttacgataacaagctcataggttccatcccaaacagcttagggaatttgaccgaacttagtgtcttgagcctttctggaaacaccttgacgggttctatcccaaataacatttgtaatttgactaaactctccatcttatctctttggagaaaccaactatctgggtacatttctcaagaactaggtaaaatgttgaatttagagagcttatatctgagtgaaaacatgctcacaggttccatcccgaatagcttagggaatttgactaaactctctttcttggatctttctagaaatcaactttccgggcacattcctcaagaactaggttacttggtgggcttaaagaatttatcactttatgacaacgtgctcacaggtttcatcccaaacaacatagggaatttcactaaactcagtatcttgagcctttctggaaacatgctcacaggttccatcccaaacagcttagggaatttgcctagactctccaccttatctgtttggagaaaccaactttctgggtgtatttctcaagaactaggtaacttggtaaatttagagaacttataccttagtgaaaacatgctcacaggttccatcccgaacagcttagggaatttgactaaactcactgccttacatattcgttctaaccaactttctggatccattcctaaagaaattagcagcttaatgaatctaaatattttgcatatcgatcaaaacaacctttctggtgaattaccattgggtctgtgcgctggaggccagctacagaatttcactgctcaggataacaacctggttgggccattgccaacaagcttgctaaactgcaaaaccctggttagagttcgtcttgagcgaaatcaacttgaaggagatatctccgagatgggccttcatccaaaccttgtctatattgacatgagctcaaataaactatatggacaattatctcatcgctggggtgagtgcgccaaacttaccactctacgtgcatcaaataatcagcttcagtag
More
|
|||||||
| Protein seq | MEHLSPQKLILPLGILLSSLVLLHAIAVPSIDEQAAALIAWKTTLQTQQPLQSWDSKAWPCNNWRGIRCGTLQGQRVITKITLHGVRLRGSLEALNFSALTTLTSINLSHNRLTGMIPQSIMSLKELRALILHKNQIRGSLFQLGLTSLTKLRFLVLSNNFLSSSIPKEICSLKRLVSLNLSSNQLGGHIPSEIGFLSKLIRLDLSNNNIIGRLDSLFMTNKPGKYNNKSSLSNLKVLALSSNQLTGPIPHELGDLVSLEYLNLSQNSLVDSIPTKIINLKELKSLDLSDNNLSGHIPEQIGNLVRLRSLKLNSNQLSGHIPNNLGNLAKLCFLYLQSNKLSWHIPQELGSLLNLKDLQLYDNKLIGSIPNSLGNLTELSVLSLSGNTLTGSIPNNICNLTKLSILSLWRNQLSGYISQELGKMLNLESLYLSENMLTGSIPNSLGNLTKLSFLDLSRNQLSGHIPQELGYLVGLKNLSLYDNVLTGFIPNNIGNFTKLSILSLSGNMLTGSIPNSLGNLPRLSTLSVWRNQLSGCISQELGNLVNLENLYLSENMLTGSIPNSLGNLTKLTALHIRSNQLSGSIPKEISSLMNLNILHIDQNNLSGELPLGLCAGGQLQNFTAQDNNLVGPLPTSLLNCKTLVRVRLERNQLEGDISEMGLHPNLVYIDMSSNKLYGQLSHRWGECAKLTTLRASNNQLQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0615400 | SBH | 1.810530 | 3.247144 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g34800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0615400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020930 | SBH | 0.224015 | 0.0 | 1.065708 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021010 | SBH | 0.036886 | 0.207486 | 0.122091 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020990 | SBH | 0.000000 | 0.323324 | 0.581727 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020740 | SBH | 0.027518 | 0.028389 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020660 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0309400 | SBH | 1.595126 | 0.842302 | 3.992793 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020380 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0369700 | SBH | 0.00825 | 0.0766175 | 0.0391675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015480 | RBH | 0.926235 | 0.429352 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020620 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021060 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020750 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021020 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020750 | RBH | 0.0 | 0.0 | 0.0 |
