Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0006780 | OGI:02014330 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:4867482-4870340 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cacccatggccatggtgcaagacgtcaccggctacctatgcctctccttggctctcctcttgctcactctcgtcctccacaaggtggcgaggaaggcgaccggtaatggcgccggcaagccgaggcttccgccggggccgtggcggctgccggtcatcggcaacctccaccaggtcgcgatgggcggcccgctcgtccaccgcaccatggccgacctggcgcgccggctcgacgcgccgctcatgtcgctcaggctcggcgagctccgcgtcgtcgtcgcctcgtccgccgacgccgccagggagatcaccaagacgcacgacgtcgcgttcgcgacgcggccgtggagccccaccatccgcgtcctgatgagcgacggcgtcgggctggtgttcgcgccctacggcgcgctgtggcggcagctccgcaagatcgccatggtggagctcctcagcgcgcgccgcgtccagtcgttccgccgcatccgggaggacgaggtcggccgcctcgtcgccgacgtcgccgcggcgcagcccggcgaggccgtgaacgtcagcgagcggatcacggcgctcatctccgactcggcggtgcgcaccatcatgggcgacaggttcgagaagcgggacgaattcctggagggtctcgccgagggggacaggatagcctccgggttcagcctcggcgacctgttcccgtcgtcgaggctggccagcttcgtcggcggcacgacgcggcgggcggaggcgaaccaccgcaagaacttcgggctgatagagtgcgctctgaggcagcacgaggagcggagggccgccggcgccgtggacgacgacgaggacctcgtcgatgtgcttctcagggttcagaaggaagggagcctccaagtgcccctcaccatgggcaatatcaaagccgttatccttgtaagttggcaagtacttgttcttacctcttccccttttcccctgcgaaatcactaatacgcgctcggtcgctgaaatctcggcgaggcgatcggttttttttcttgccgttacctttccatttttgccagactcctgtgctcgagatctttgtttttttccgtcgcttttttggctgtttttttctgttaccgaatggtgacgcgcggcgatcagcccgttccccatgatcttttttttttttcactcgcattacttttctgtttttagtaagtttatataactaaaggtggtacacatcaaatttacacaactaaaatttatatacccaaagtttatacatcccaaagtttataggttaaaagtttatatacccggttcaaattcgaattcgaatttgtaagtataaagtttattcacatgaatatatttttcaagtgtattagatttctttttatattttttaaatggtttaaaattgatagtgtggtagaaaagggagacgtgtgcggggtgggacgcgggtgctgatagttttttttttatcgcttaaccctccctccagcgagcgatcgcgtactaggaccatccttttccctatggataatgataatagtattatctcccttaattttgataggacttattttattcaattttaacatcttcgacaccaaagcttaaacttttaattggttgcaaaatagtacaaccttaataactactccatctgttcacaaatacagataattttaagcccttttgacttgtccaaaaatattaatgagtttaaagtactttttgtcttatcaatcatttatttttcaatcgtatcaccaatcactttctggatctataatccctatattcgtgaacggatggaatataagacatattttaccaaaccccttttacctgagtgcacttaaaattttactactgttaatgtaaaaatctataaagttttacctttaataataaaattaaataaccttaactgatgaatgggggagcatatgaaaataaaaaaaaaggtatgcacactgaacaaagaaagtaattgataagatattgttttttacgtatatgggaaatcatgttttttccatgcatataggaactttttggtgctgggagcgagacatcagcaagtacacttcattgggcgatgactgagctcataatgaatccaaaagtgatgctgaaggcacaagatgagttaagtaacgtcatcaaaggaaagcaaacaatatctgaagatgacttagttgaactgaggtacttaaaacttgttatcaaagagactttaaggttacatcctgtggtgccactacttctccctagggaatgtcgggagacatgtgaggtcatggggtacgatatccccataggtactactatgcttgttaatgtgtgggcaatcggtagagaccctaagtattgggaggacgctgagacattcagacccgagcgatttgaggatggacatatagacttcaaaggaacagattttgaatttataccgtttggagctgggcgaaggaagtgccctggtatggcatttgctgaagcaatcatggagctcgttctagcctcgcttctctatcactttgattgggagcttcctgatgggatctcgccgaccaaggtggacatgatggaggagttgggtgcaactattcgaaaaaagaatgatctttatctcgttccaactgttcgtgtgcctatgtcgactgccctgtagctgtttacacttaagagacaaaatatttgtctcatctgtacgcgcctatatgataaactatgtaacttttgatggattgatgtactcctactttgcatcctactcattctacattattactttaaatttagttattaaactatttaatttatttatataatcaagattttaactcgtgacaataatttgata
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| CDS seq | atggccatggtgcaagacgtcaccggctacctatgcctctccttggctctcctcttgctcactctcgtcctccacaaggtggcgaggaaggcgaccggtaatggcgccggcaagccgaggcttccgccggggccgtggcggctgccggtcatcggcaacctccaccaggtcgcgatgggcggcccgctcgtccaccgcaccatggccgacctggcgcgccggctcgacgcgccgctcatgtcgctcaggctcggcgagctccgcgtcgtcgtcgcctcgtccgccgacgccgccagggagatcaccaagacgcacgacgtcgcgttcgcgacgcggccgtggagccccaccatccgcgtcctgatgagcgacggcgtcgggctggtgttcgcgccctacggcgcgctgtggcggcagctccgcaagatcgccatggtggagctcctcagcgcgcgccgcgtccagtcgttccgccgcatccgggaggacgaggtcggccgcctcgtcgccgacgtcgccgcggcgcagcccggcgaggccgtgaacgtcagcgagcggatcacggcgctcatctccgactcggcggtgcgcaccatcatgggcgacaggttcgagaagcgggacgaattcctggagggtctcgccgagggggacaggatagcctccgggttcagcctcggcgacctgttcccgtcgtcgaggctggccagcttcgtcggcggcacgacgcggcgggcggaggcgaaccaccgcaagaacttcgggctgatagagtgcgctctgaggcagcacgaggagcggagggccgccggcgccgtggacgacgacgaggacctcgtcgatgtgcttctcagggttcagaaggaagggagcctccaagtgcccctcaccatgggcaatatcaaagccgttatccttgaactttttggtgctgggagcgagacatcagcaagtacacttcattgggcgatgactgagctcataatgaatccaaaagtgatgctgaaggcacaagatgagttaagtaacgtcatcaaaggaaagcaaacaatatctgaagatgacttagttgaactgaggtacttaaaacttgttatcaaagagactttaaggttacatcctgtggtgccactacttctccctagggaatgtcgggagacatgtgaggtcatggggtacgatatccccataggtactactatgcttgttaatgtgtgggcaatcggtagagaccctaagtattgggaggacgctgagacattcagacccgagcgatttgaggatggacatatagacttcaaaggaacagattttgaatttataccgtttggagctgggcgaaggaagtgccctggtatggcatttgctgaagcaatcatggagctcgttctagcctcgcttctctatcactttgattgggagcttcctgatgggatctcgccgaccaaggtggacatgatggaggagttgggtgcaactattcgaaaaaagaatgatctttatctcgttccaactgttcgtgtgcctatgtcgactgccctgtag
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| Protein seq | MAMVQDVTGYLCLSLALLLLTLVLHKVARKATGNGAGKPRLPPGPWRLPVIGNLHQVAMGGPLVHRTMADLARRLDAPLMSLRLGELRVVVASSADAAREITKTHDVAFATRPWSPTIRVLMSDGVGLVFAPYGALWRQLRKIAMVELLSARRVQSFRRIREDEVGRLVADVAAAQPGEAVNVSERITALISDSAVRTIMGDRFEKRDEFLEGLAEGDRIASGFSLGDLFPSSRLASFVGGTTRRAEANHRKNFGLIECALRQHEERRAAGAVDDDEDLVDVLLRVQKEGSLQVPLTMGNIKAVILELFGAGSETSASTLHWAMTELIMNPKVMLKAQDELSNVIKGKQTISEDDLVELRYLKLVIKETLRLHPVVPLLLPRECRETCEVMGYDIPIGTTMLVNVWAIGRDPKYWEDAETFRPERFEDGHIDFKGTDFEFIPFGAGRRKCPGMAFAEAIMELVLASLLYHFDWELPDGISPTKVDMMEELGATIRKKNDLYLVPTVRVPMSTAL |
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| Function | Cytochrome P450 71D8 [UniProtKB/Swiss-Prot:O81974] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0006780 | OsLima_02g0006780.01 | Chr02 | 4867482 | 4870340 | + | NAM | ||
| CDS seq | atggccatggtgcaagacgtcaccggctacctatgcctctccttggctctcctcttgctcactctcgtcctccacaaggtggcgaggaaggcgaccggtaatggcgccggcaagccgaggcttccgccggggccgtggcggctgccggtcatcggcaacctccaccaggtcgcgatgggcggcccgctcgtccaccgcaccatggccgacctggcgcgccggctcgacgcgccgctcatgtcgctcaggctcggcgagctccgcgtcgtcgtcgcctcgtccgccgacgccgccagggagatcaccaagacgcacgacgtcgcgttcgcgacgcggccgtggagccccaccatccgcgtcctgatgagcgacggcgtcgggctggtgttcgcgccctacggcgcgctgtggcggcagctccgcaagatcgccatggtggagctcctcagcgcgcgccgcgtccagtcgttccgccgcatccgggaggacgaggtcggccgcctcgtcgccgacgtcgccgcggcgcagcccggcgaggccgtgaacgtcagcgagcggatcacggcgctcatctccgactcggcggtgcgcaccatcatgggcgacaggttcgagaagcgggacgaattcctggagggtctcgccgagggggacaggatagcctccgggttcagcctcggcgacctgttcccgtcgtcgaggctggccagcttcgtcggcggcacgacgcggcgggcggaggcgaaccaccgcaagaacttcgggctgatagagtgcgctctgaggcagcacgaggagcggagggccgccggcgccgtggacgacgacgaggacctcgtcgatgtgcttctcagggttcagaaggaagggagcctccaagtgcccctcaccatgggcaatatcaaagccgttatccttgaactttttggtgctgggagcgagacatcagcaagtacacttcattgggcgatgactgagctcataatgaatccaaaagtgatgctgaaggcacaagatgagttaagtaacgtcatcaaaggaaagcaaacaatatctgaagatgacttagttgaactgaggtacttaaaacttgttatcaaagagactttaaggttacatcctgtggtgccactacttctccctagggaatgtcgggagacatgtgaggtcatggggtacgatatccccataggtactactatgcttgttaatgtgtgggcaatcggtagagaccctaagtattgggaggacgctgagacattcagacccgagcgatttgaggatggacatatagacttcaaaggaacagattttgaatttataccgtttggagctgggcgaaggaagtgccctggtatggcatttgctgaagcaatcatggagctcgttctagcctcgcttctctatcactttgattgggagcttcctgatgggatctcgccgaccaaggtggacatgatggaggagttgggtgcaactattcgaaaaaagaatgatctttatctcgttccaactgttcgtgtgcctatgtcgactgccctgtag
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| Protein seq | MAMVQDVTGYLCLSLALLLLTLVLHKVARKATGNGAGKPRLPPGPWRLPVIGNLHQVAMGGPLVHRTMADLARRLDAPLMSLRLGELRVVVASSADAAREITKTHDVAFATRPWSPTIRVLMSDGVGLVFAPYGALWRQLRKIAMVELLSARRVQSFRRIREDEVGRLVADVAAAQPGEAVNVSERITALISDSAVRTIMGDRFEKRDEFLEGLAEGDRIASGFSLGDLFPSSRLASFVGGTTRRAEANHRKNFGLIECALRQHEERRAAGAVDDDEDLVDVLLRVQKEGSLQVPLTMGNIKAVILELFGAGSETSASTLHWAMTELIMNPKVMLKAQDELSNVIKGKQTISEDDLVELRYLKLVIKETLRLHPVVPLLLPRECRETCEVMGYDIPIGTTMLVNVWAIGRDPKYWEDAETFRPERFEDGHIDFKGTDFEFIPFGAGRRKCPGMAFAEAIMELVLASLLYHFDWELPDGISPTKVDMMEELGATIRKKNDLYLVPTVRVPMSTAL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.318506 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0184900 | SBH | 0.000000 | 0.444793 | 1.521383 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g09220 | SBH | 0.000000 | 0.290844 | 0.438793 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0184900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006490 | SBH | 0.0 | 1.991726 | 1.326611 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0006650 | SBH | 0.000000 | 0.247685 | 1.030326 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0006430 | RBH | 0.0 | 0.000000 | 0.672735 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0006370 | SBH | 0.011247 | 0.020465 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006420 | RBH | 1.352356 | 4.581595 | 5.586592 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0081400 | RBH | 1.12522 | 11.593083 | 0.532187 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006370 | SBH | 0.000000 | 0.095334 | 0.684129 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0083000 | RBH | 4.397418 | 2.520571 | 0.099118 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0023840 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0006340 | RBH | 0.000000 | 12.116674 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0006660 | SBH | 0.746377 | 3.657747 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006670 | SBH | 0.388017 | 0.148740 | 0.122075 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0006370 | RBH | 0.657172 | 7.011458 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006530 | RBH | 0.038728 | 0.338339 | 0.781826 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006500 | SBH | 0.000000 | 1.786373 | 6.333513 |
