Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0004680 | OGI:02009420 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3240407-3242907 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagaaaactatggcatacaagctgagtagaaggttctagtagcttctagacaagtagaggaagaggaagggtagagaggaagatcgacaagggagcccaccggctgcccaagtcgccgccgccgccgccgttgccggttcgatcgatctgttcgatgcccttcccttgctattgctgttgttttgtattggtgtgtcttgggcctgcttgggcttcttggtgaatggccgacccagcccacgatgttgcgttggttcctaacaaccttgttgatattctgctttcttgagatagagtaggctgtagctgcttcttcggaattgcaatggtgcaaacgcatagggttgcatagctttgggttcttagcaaaactagaacttggaaatgtgttgaagtggcctccaattggtacaattccttcaaggtcattgtaagaaatattgaaatttataaaggaagatagtttcactagtatctccaataggattgtgcctgtcagatggttggtagacaggtcgagcaccttcagattcttgaggttgctgatccattgtgggatctccctgcttaagttgttgaagcacaagttgagtgaaagcggtgctttcaactgaacaatctccacggagatcacaccacttaatttgttgttacccagattcaacattttggggaatgcgctggcgtgtggtactgaaaacacaaacatgcactcacataaactgtaaagggaagaaatcgataacatggcagcttcaagtggcatgtggaagaaattgataaaaaccgtactaatgtaaatactgaaaataaaattacagtgggtttggactagattgagttattgacacagttaacttcttcagttcaacagtcttacataattatattatgtaaattttacatctgcaacaaattggcttctcttaacacataaaaaccttccaaattatctctctgtgtacttgaataactggtgcacagttcaattggagctgttgattgatttcactgaagcttggactacaagaaatcatcaggccatggcgggagatagtgatggctgtcattttgtcacaggtctgggttggtttgatatgcttcatttgatacatattggtatgactggaccaaatatgatcaaaactgaagcagagctagaaaaaccttgataggacaatctgatcatatagcacccctacacaaaagaatgcgccaaaggaaatcataaagacaaatggtgatacaatcttgtcattagtttgttttgtggagacaaacggtgtttctgctaaaccacaatggtgtgcgagcataggaccacacaaccttgggttcccatcaaagctagtacttgggaatgtgctaagctgtcctgcatttggaactggcccttcaaggtcattgttagaaatgttgaatgctgaaagaaagtgcagtttattcagcccatcaggaattgtaccagtgagattattgcttgacaaatcaagcacctgcaggtttgtgaggttgtagattgattctggtatgtctccagataatctgttgaagctcaaattgagtaatagaagtgccttcaattgaccaatctcgtcggggatcatgccagtgaagttattgatgcctagattcatcactttaggcaaagcactggttattcgatattgaagtaatggagctgtaaaaacaggcagctcaaataactgtggtgcagcattatctgttttgaacattggcatctccattaaggcttttggaatttctcctgaaaggctgttgtttgatacatctagatagaagagaaagtttaggctaccgatccagtcaggtatttgtccagtaagttgattctgatataaaaataacaccatcaaatttgtgagctttgataaccaatgtggtattcttcctgacaacatgcagttggtcagggaaaggacctgaagattctcaaaaccatcaattatatcaccctctggcatggcttcgtgcttgaagtttctgccaatgaataaggcagtgaggttcctgcaactctgaagtttctgaaatgttcttgtgatatttgtgagagagagatcaacaagtgatagaaaagtgaggtgcttcagactgcctatcctctctgataactgcccatggaatctattgtaagacagtcgtaatgcagttagatttctgcatgagtagatgctttctggaactgttccagagaagttgttccaaacaacgtctaaagttttcagattgggcagtgtggagaagttcaccatgttgagctccccgctgaagctgttgctccgaaggttgatggttacaaggtttgtgcagtcactcaaagttgatggcagctccccagacatcatgttgttgttcagatggaaatcctccagtctcttgatctgtcctatggaccgtgggatgctgccaatgagcttatttcctccaagatcaagggtgatcaaatttatgagcttgatgatgccgtcaattga
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| CDS seq | atggagaaaactatggcatacaagctgagtagaagaggaagaggaagggtagagaggaagatcgacaagggagcccaccggctgcccaagtcgccgccgccgccgccgttgccgattgggcagtgtggagaagttcaccatgttgagctccccgctgaagctgttgctccgaaggttgatggttacaagatggaaatcctccagtctcttgatctgtcctatggaccgtgggatgctgccaatgagcttatttcctccaagatcaagggtgatcaaatttatgagcttgatgatgccgtcaattga |
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| Protein seq | MEKTMAYKLSRRGRGRVERKIDKGAHRLPKSPPPPPLPIGQCGEVHHVELPAEAVAPKVDGYKMEILQSLDLSYGPWDAANELISSKIKGDQIYELDDAVN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0004680 | OsLima_02g0004680.01 | Chr02 | 3240407 | 3242907 | + | NAM | ||
| CDS seq | atggagaaaactatggcatacaagctgagtagaagaggaagaggaagggtagagaggaagatcgacaagggagcccaccggctgcccaagtcgccgccgccgccgccgttgccgattgggcagtgtggagaagttcaccatgttgagctccccgctgaagctgttgctccgaaggttgatggttacaagatggaaatcctccagtctcttgatctgtcctatggaccgtgggatgctgccaatgagcttatttcctccaagatcaagggtgatcaaatttatgagcttgatgatgccgtcaattga
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| Protein seq | MEKTMAYKLSRRGRGRVERKIDKGAHRLPKSPPPPPLPIGQCGEVHHVELPAEAVAPKVDGYKMEILQSLDLSYGPWDAANELISSKIKGDQIYELDDAVN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004100 | RBH | 0.078662 | 0.438656 | 0.389170 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004200 | SBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004150 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0003980 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004100 | RBH | 0.420097 | 5.365288 | 6.411112 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0049900 | SBH | 0.9587415 | 4.7533395 | 3.668093 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004020 | RBH | 0.142303 | 0.000000 | 0.706958 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0051900 | SBH | 2.271668 | 9.3980925 | 14.4844895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004190 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004200 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004250 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004220 | SBH | 0.067925 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004030 | SBH | 0.000000 | 2.348010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004290 | SBH | 0.000000 | 0.804911 | 0.220259 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004230 | RBH | 0.000000 | 0.000000 | 0.000000 |
