Basic Info
Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_02g0004640 OGI:02001930 | 10/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr02:3212728-3216514
Gene Symbol -
DNA seq

atggcgatttttgtttacgtccaggaatttttacaacgtagcccctgtattagcgtggcactccgtttccctcccctccgccaagccgccgccacctcctatccagcgaagcgagagggcggcgccgcggcgaggagcggaaacctcgaggtgaggttagccatgtctctttccctcctgattcgagccgcggccagaaggcgggaggaaatcccccgaatcaaaacccccgtagccggccgctgaacagctcgcgtccagatgaatcgcgtcgctgttctctctgcagccgcctcctcttagatcgatttgctgcctgattaacttgtcctttgtagaatttatgtcaggaggtctagttagaaggaaggattgtgtagagtgtagctgcttcatgtcagatttgggatgtggcgcggcatgagttcttttgtctgcaacgatttatgacatttctcaattcagtattgctgtttcactagttgcagattgtgatcccctcatggcaaattgcagagatagttgtttaaatatagtcacaaaattaatacaagaatgtttacattcatgtgtaatattgtcaagacttatgtactggcagatttcagtttacttcagttccttcttttttttgaggagaacaacttcagttccttctgattttctactttggagcagactgtattaactgaattttacgagcatatcaccagctggtaaaatcagcttttcctgggtattcaactatttatcctgatgggggtggaaccactcgagatcaccacacagttaagacggttatagtaagtacaaagtcgcagctgttgctttgcttgttttatttctatggcccattgcatatctacaagccattaatccagtacatgttattgactttctctatcgtaatcggtttaaccgaaaatatctagatacaactatctgatcatatagcactcctattccaaagaatacacaaaaagcaatcacagggacgaccttgttgatgtaatctatttttgagcttgggggagacaaatctgcttctgctacattgcaacggtgcaaaagcatcgggctgcatagctctgggtttccagcaaaactagaacttggaaatgtgctgaactggcctccaattggtacagacccttttagatcattgtaggaaacattgaattcagaaaggaagtgaaggttcaccagtgctggagggattgcacctgtcagatgattgtatgacaggtctagaaccatcagattcttgaggttgctgatcgattgtgggatctccctgtttaggttgttgaagctcaagttgagtgaaacgagtgctttcaactcaccgatctcattggggatcacaccagtgaatttgttgttacctagattcagcattttagggagagcagtggccgtatggtactgaaaacacaaacatgcacctgcatagactgaaaacgggaagccccttgggactgagctatctgaaacattgtccgattttagcattggcatctccattagtgctgctggtatttctcctgtaaggctattattggatatgtctacatacttaaggaagtttaggctattgatccaggttggtataggtccactgagtttattgttgtataaagctaaaactttcaatttttttagctttgataaccactttggaatttttccagaaagtgtacagtcatttatgctaagacccttaatattctcaaaaccatcaattgtttcatcctgtggcatagcttcatgcatgaagtttcccccgattagcaaggtagtgaggttccttaagctcttgagtatgtgaattgtatttgtgatatttgtgaaattgttgtaggaaagtgacacgaaggcgatggacttcaaatttcctattttatttgtaagctggccgtgaagcctattggaagatagccgtaaccaagtcaaattactgcatgaatagatgctttctggaattatgccagtgaagtaatttgtggacaaatctagtgttttcagatttggcaggttggagaagttaaccttagcaagctctcccgtgaaactgttgctcctgaggttgatggttgctagatttgtgcaattgcccaaggatgatggcaactctccagataagttgttgttattcatgtgaagctcctctagtctcttcaactggcctatagaatttgggatcttgccactgaatctattccatccaagatgaacaaaaacaagattgatgagctttacaacgagagcatcatcaattgttccttgcaatccattgttagcgaaagagaggtactccaatgatgtggcattgaagagatcaccagggaaagaccctttgatgttgttgtcatcagccttgagcagtctaagggcagaacatttacctattccaggggggatgttgccactgaactggttgtacccaagatcaagaacagcaaaagatgtcgagctgctgcagaaggaggaaggtatgtgccctgtaaaactgttgttgctcgcattgattgcgaccaggttcctcattttctcccatgtgatggatggaaactctcctgtaaaccggttgcttgagatattcagtacctgcagtggctggtcagatactgatggattcaactcttgcaggtccccgctgaggcgattgaagctgacatcaaggacgacgatgctaccagaggacatcaactctgctggaaggccaccagatagggagttgtacgacaggttgaggcgcgacaagctggtaagctctcccagtgacggtgagatttgcccttcgaggcctttagaggctagatggacctcaattacaaccccatcttcgttgcaggtgatgccttcccacacacagcagtccgtgccattctgccacgacatggcgatgccaccgtcttgcgacagctcagcaatgaaccggaggagggagctcttctcctgctcgacgcaagccatggcggaggtggccacggcgagaagcagcagcaataatgcagcagtagcgaggccagaggaaggcatcgctagcctgcttctccacggagaatgttgtgccatctgcatgatctctctcatcggagctgcgtttggagttatacgtggcaatctggaagctaaaatgttcgtgaaaacgacactgtttcaggataataatgcacatggctgctttcttgacctaacgcgtttgagtctttgcgactggcatatttgagggtacgtggtagtgatgtgactcattctatcacgttgtttttgtttattgttttcattctcttttcagtttatatagtagaggtccctgccttcccggttcgagtttttgttcctagttctctgtcgttctactctgaaatttcaacaatttcgtgtgaaatgtttcatgttaagaactcaggttccgtttgttgtcgattccagtctagttcagttgtgtattaaattaccaccagaacacatctgcttgcgatggcaattcatgtttgcaatgtgcactgctactttgcacaattgcatcccttatgttaagttcgaatttgtgctcagattaaccctgcgttttcacttacctttcactttcaacttttgcctctgaataactatgttctcacttgttcggttagttgtctcatatgaactggaacggcagaattttaacgttgagatgattgaaatctgtggtttgttcggagagaacgctgtgctcccgcggcctcttcaccacgccgccaggctgggaccgctgccgccgtcgatctccactctttag

More
CDS seq

atggcgatttttgtttacgtccaggaatttttacaacgtagcccctgtattagcgtggcactccgtttccctcccctccgccaagccgccgccacctcctatccagcgaagcgagagggcggcgccgcggcgaggagcggaaacctcgaggtgaggtctagaaccatcagattcttgaggttgctgatcgattgtgggatctccctgtttaggttgttgaagctcaagttgagtgaaacgagtgctttcaactcaccgatctcattggggatcacaccagaaagtgacacgaaggcgatggacttcaaatttcctattttatttgttggagaagttaaccttagcaagctctcccgtgaaactgttgctcctgagtctcttcaactggcctatagaatttgggatcttgccactgaatctattccatccaagatgaacaaaaacaagattgatgagctttacaacgagagcatcatcaattgttccttgcaatccattgttagcgaaagagagagatcaccagggaaagaccctttgatgttgttgtcatcagccttgagcagtctaagggcagaacatttacctattccaggggggatgttgccactgaactggttgtacccaagatcaagaacagcaaaagatgtcgagctgctgcagaaggaggaaggtatgtgccctgtaaaactgttgttgctcgcattgattgcgaccaggttcctcattttctcccatgtgatggatggaaactctcctgtaaaccggttgcttgagatattcagtacctgcagtggctggtcagatactgatggattcaactcttgcaggtccccgctgaggcgattgaagctgacatcaaggacgacgatgctaccagaggacatcaactctgctggaaggccaccagatagggagttgtacgacaggttgaggcgcgacaagctggtaagctctcccagtgacggtgagatttgcccttcgaggcctttagaggctagatggacctcaattacaaccccatcttcgttgcaggtgatgccttcccacacacagcagtccgtgccattctgccacgacatggcgatgccaccgtcttgcgacagctcagcaatgaaccggaggagggagctcttctcctgctcgacgcaagccatggcggaggtggccacggcgagaagcagcagcaataatgcagcagtagcgaggccagaggaaggcatcgctagcctgcttctccacggagaatgttgtgccatctgcatgatctctctcatcggagctgcgtttggagttatacgtggcaatctggaagctaaaatgttcgtgaaaacgacactgtttcaggataataatgcacatggctgctttcttgacctaacgctttatatagtagaggtccctgccttcccgaattttaacgttgagatgattgaaatctgtggtttgttcggagagaacgctgtgctcccgcggcctcttcaccacgccgccaggctgggaccgctgccgccgtcgatctccactctttag

More
Protein seq

MAIFVYVQEFLQRSPCISVALRFPPLRQAAATSYPAKREGGAAARSGNLEVRSRTIRFLRLLIDCGISLFRLLKLKLSETSAFNSPISLGITPESDTKAMDFKFPILFVGEVNLSKLSRETVAPESLQLAYRIWDLATESIPSKMNKNKIDELYNESIINCSLQSIVSERERSPGKDPLMLLSSALSSLRAEHLPIPGGMLPLNWLYPRSRTAKDVELLQKEEGMCPVKLLLLALIATRFLIFSHVMDGNSPVNRLLEIFSTCSGWSDTDGFNSCRSPLRRLKLTSRTTMLPEDINSAGRPPDRELYDRLRRDKLVSSPSDGEICPSRPLEARWTSITTPSSLQVMPSHTQQSVPFCHDMAMPPSCDSSAMNRRRELFSCSTQAMAEVATARSSSNNAAVARPEEGIASLLLHGECCAICMISLIGAAFGVIRGNLEAKMFVKTTLFQDNNAHGCFLDLTLYIVEVPAFPNFNVEMIEICGLFGENAVLPRPLHHAARLGPLPPSISTL
Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_02g0004640 OsLima_02g0004640.03 Chr02 3214976 3216514 + NAM
CDS seq

atgagctttacaacgagagcatcatcaattgttccttgcaatccattgttagcgaaagagaggtactccaatgatgtggcattgaagagatcaccagggaaagaccctttgatgttgttgtcatcagccttgagcagtctaagggcagaacatttacctattccaggggggatgttgccactgaactggttgtacccaagatcaagaacagcaaaagatgtcgagctgctgcagaaggaggaaggtatgtgccctgtaaaactgttgttgctcgcattgattgcgaccaggttcctcattttctcccatgtgatggatggaaactctcctgtaaaccggttgcttgagatattcagtacctgcagtggctggtcagatactgatggattcaactcttgcaggtccccgctgaggcgattgaagctgacatcaaggacgacgatgctaccagaggacatcaactctgctggaaggccaccagatagggagttgtacgacaggttgaggcgcgacaagctggtaagctctcccagtgacggtgagatttgcccttcgaggcctttagaggctagatggacctcaattacaaccccatcttcgttgcaggtgatgccttcccacacacagcagtccgtgccattctgccacgacatggcgatgccaccgtcttgcgacagctcagcaatgaaccggaggagggagctcttctcctgctcgacgcaagccatggcggaggtggccacggcgagaagcagcagcaataatgcagcagtagcgaggccagaggaaggcatcgctagcctgcttctccacggagaatgttgtgccatctgcatgatctctctcatcggagctgcgtttggagttatacgtggcaatctggaagctaaaatgttcgtgaaaacgacactgtttcaggataataatgcacatggctgctttcttgacctaacgctttatatagtagaggtccctgccttcccgaattttaacgttgagatgattgaaatctgtggtttgttcggagagaacgctgtgctcccgcggcctcttcaccacgccgccaggctgggaccgctgccgccgtcgatctccactctttag

More
Protein seq

MSFTTRASSIVPCNPLLAKERYSNDVALKRSPGKDPLMLLSSALSSLRAEHLPIPGGMLPLNWLYPRSRTAKDVELLQKEEGMCPVKLLLLALIATRFLIFSHVMDGNSPVNRLLEIFSTCSGWSDTDGFNSCRSPLRRLKLTSRTTMLPEDINSAGRPPDRELYDRLRRDKLVSSPSDGEICPSRPLEARWTSITTPSSLQVMPSHTQQSVPFCHDMAMPPSCDSSAMNRRRELFSCSTQAMAEVATARSSSNNAAVARPEEGIASLLLHGECCAICMISLIGAAFGVIRGNLEAKMFVKTTLFQDNNAHGCFLDLTLYIVEVPAFPNFNVEMIEICGLFGENAVLPRPLHHAARLGPLPPSISTL

More
Gene Transcript Chromosome Start End Strand Source
OsLima_02g0004640 OsLima_02g0004640.01 Chr02 3212728 3216514 + NAM
CDS seq

atggcgatttttgtttacgtccaggaatttttacaacgtagcccctgtattagcgtggcactccgtttccctcccctccgccaagccgccgccacctcctatccagcgaagcgagagggcggcgccgcggcgaggagcggaaacctcgaggtgaggtctagaaccatcagattcttgaggttgctgatcgattgtgggatctccctgtttaggttgttgaagctcaagttgagtgaaacgagtgctttcaactcaccgatctcattggggatcacaccagaaagtgacacgaaggcgatggacttcaaatttcctattttatttgttggagaagttaaccttagcaagctctcccgtgaaactgttgctcctgagtctcttcaactggcctatagaatttgggatcttgccactgaatctattccatccaagatgaacaaaaacaagattgatgagctttacaacgagagcatcatcaattgttccttgcaatccattgttagcgaaagagagagatcaccagggaaagaccctttgatgttgttgtcatcagccttgagcagtctaagggcagaacatttacctattccaggggggatgttgccactgaactggttgtacccaagatcaagaacagcaaaagatgtcgagctgctgcagaaggaggaaggtatgtgccctgtaaaactgttgttgctcgcattgattgcgaccaggttcctcattttctcccatgtgatggatggaaactctcctgtaaaccggttgcttgagatattcagtacctgcagtggctggtcagatactgatggattcaactcttgcaggtccccgctgaggcgattgaagctgacatcaaggacgacgatgctaccagaggacatcaactctgctggaaggccaccagatagggagttgtacgacaggttgaggcgcgacaagctggtaagctctcccagtgacggtgagatttgcccttcgaggcctttagaggctagatggacctcaattacaaccccatcttcgttgcaggtgatgccttcccacacacagcagtccgtgccattctgccacgacatggcgatgccaccgtcttgcgacagctcagcaatgaaccggaggagggagctcttctcctgctcgacgcaagccatggcggaggtggccacggcgagaagcagcagcaataatgcagcagtagcgaggccagaggaaggcatcgctagcctgcttctccacggagaatgttgtgccatctgcatgatctctctcatcggagctgcgtttggagttatacgtggcaatctggaagctaaaatgttcgtgaaaacgacactgtttcaggataataatgcacatggctgctttcttgacctaacgctttatatagtagaggtccctgccttcccgaattttaacgttgagatgattgaaatctgtggtttgttcggagagaacgctgtgctcccgcggcctcttcaccacgccgccaggctgggaccgctgccgccgtcgatctccactctttag

More
Protein seq

MAIFVYVQEFLQRSPCISVALRFPPLRQAAATSYPAKREGGAAARSGNLEVRSRTIRFLRLLIDCGISLFRLLKLKLSETSAFNSPISLGITPESDTKAMDFKFPILFVGEVNLSKLSRETVAPESLQLAYRIWDLATESIPSKMNKNKIDELYNESIINCSLQSIVSERERSPGKDPLMLLSSALSSLRAEHLPIPGGMLPLNWLYPRSRTAKDVELLQKEEGMCPVKLLLLALIATRFLIFSHVMDGNSPVNRLLEIFSTCSGWSDTDGFNSCRSPLRRLKLTSRTTMLPEDINSAGRPPDRELYDRLRRDKLVSSPSDGEICPSRPLEARWTSITTPSSLQVMPSHTQQSVPFCHDMAMPPSCDSSAMNRRRELFSCSTQAMAEVATARSSSNNAAVARPEEGIASLLLHGECCAICMISLIGAAFGVIRGNLEAKMFVKTTLFQDNNAHGCFLDLTLYIVEVPAFPNFNVEMIEICGLFGENAVLPRPLHHAARLGPLPPSISTL

More
Gene Transcript Chromosome Start End Strand Source
OsLima_02g0004640 OsLima_02g0004640.02 Chr02 3212728 3214827 + NAM
CDS seq

atggcgatttttgtttacgtccaggaatttttacaacgtagcccctgtattagcgtggcactccgtttccctcccctccgccaagccgccgccacctcctatccagcgaagcgagagggcggcgccgcggcgaggagcggaaacctcgaggtgaggtctagaaccatcagattcttgaggttgctgatcgattgtgggatctccctgtttaggttgttgaagctcaagttgagtgaaacgagtgctttcaactcaccgatctcattggggatcacaccagaaagtgacacgaaggcgatggacttcaaatttcctattttatttgttggagaagttaaccttagcaagctctcccgtgaaactgttgctcctgaggttgatggttgctag

More
Protein seq

MAIFVYVQEFLQRSPCISVALRFPPLRQAAATSYPAKREGGAAARSGNLEVRSRTIRFLRLLIDCGISLFRLLKLKLSETSAFNSPISLGITPESDTKAMDFKFPILFVGEVNLSKLSRETVAPEVDGC
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.000000 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0156300 SBH 0.000000 0.000000 0.796858
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os02g0156300 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0004111 SBH 0.101891 1.419222 2.715559
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0004480 SBH 0.0 0.000000 0.000000
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0004350 SBH 0.000000 0.000000 1.866116
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0004220 SBH 0.000000 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0018600 SBH 0.000000 0.000000 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0049900 SBH 0.9587415 4.7533395 3.668093
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0004290 SBH 0.000000 0.314814 0.120547
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0051900 SBH 2.271668 9.3980925 14.4844895
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0004510 RBH 0.000000 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0004150 RBH 0.000000 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0004430 RBH 0.000000 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0004380 RBH 0.000000 0.000000 0.147911
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0004300 RBH 0.000000 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G004230 RBH 0.000000 0.0 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0004160 RBH 0.000000 0.000000 0.000000
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.