Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0002870 | OGI:02006710 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:1984004-1987219 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcagttcaggctggtgatcttggttctgctcctctcctgctcgcttcagctgcttcgcgcgtttccattccccatcccgttctttggccccttcacgagcccacaagacggtatttttttgcaacacttgtcagttgtcaccaagattttgatttcagacaagatgattttgatgtgatttcgtcgcttgcagttgatgcgataaacgagctgtacgcgtcgctgggctcgcctgacctccatggctgggcttcttcaggaggagacccctgcatggaagcatggcagggggtgcaatgccttggacccaacatcactgcaatgtaagtgtaagcttagcttcactctcacttatgctgctggtaattactgattattagaatgcttgactcttattgatgctgctgataattaccaatggttactctgaatctgtaatttctgacgaaagtatcaacctgacagagagctcagaggtgcaggcctgggaggaaagctgagtgagacgctggggaagttcactgccatgacagcattgtactgacttgcacaatgcatttttttcatatctgatgtctctagttcttgttcttgctttgatcactgtatgattgttgggacagggatctgagcagcaaccgcattgggggagtgattcctgagagcttaccacctgcagtaaaacaactgtgagatgcaggcagatgtgttggttgagttcttcagagatcagcatctgtggacaattggtgaagcttactgatggttgttcttggattgtgttctgcaggaatttatcttcgaatagtctcagtggcaaactcccagattcgatggcgaagctgaactcgctttcgacactgtgagtattatcctccttaattgtgtgcagtaatgttctttgtttatctctgaatttgcaatgtgtccgcaacttgtaggcatgttcagaacaatcagctcactggcacacttgatgttctaggagatcttcccctgaaagacttgtaatcactacatcaattcacacatgctctgtccaggaaaaaaaatcacacatatttaccttgatgcatttctcacctgatcctctcatgatttactaatatttgcagggatatagagaacaatcttttctcaggaccaatcccagagaaactgatcaacatcccaaaatttctgtaaatctctcagccttcctcaagaacagtagaatttaatctagtggcatcccagtctgacacaacagttggttcttgattgtgtgcaggagaaacggcaaccatcttaccatccccacgatgcccggctcttctccaactccggataccatccccggctctcctccgactccggcggcagcggtggcggcgcctcgatcaggtgcttcacaccctcctatatatgtaattccggccactccacatggcgctgcacagggtgaccctccgagacacggcaagaaggtctcgccggcgaaagccgccggattcagcatcctcgccgccggctcactgaccattgccgtggtcctgatcgtcttcgccgtgtcgaaacggcggcgggagacgtctcttcatggaggatttctgagaggagttgagatgagcactccggattggagtgggaagccttcaggacaaagtgcagttgtcaaggtagacaaagaacaaagcacaggtatatacaccgactgaaaactggagtatttcctatcttgggcccacatgtcagtgacatattaagaggtcaatcttagaacaattattaatgctcaaaaaattcagtacataaaacgctagcttgtgcagtcatctcatctacattttaatcattttgtttgttgtgttgatcactgaagttgctgaagagaaggataccaagggtagcatttcttcatatcagaagaatgttcaggagagtttacaaaaccatcctttgcaattcaagttcacaatcttcacagttgcatccttgcaacagtataccaacagtttcagtgagcagaatctgatgaggcaaaccctgttcggaaaaatctacctagcagagcagcaagacatcaaggtatctaatcaactgtaccctgaaatctccattccattcctacatggattgaacaagtttatttcttgatcagttgtaatcaagatcttgtcatttcatctctgatctctctacaccttatactagtttgcagtactgaagcttgacgaagcgatggcgagaatgccggtggacgagttcttgaggatggttcagagaatctctgaactccagcatcccaacatcgaggagcttgcaggatgctgcgtcgagcacggacagaggctgctcgtctacaagcatttcagcgatgaaactctcgacgacatgatccatctgaagaaactggcatcatcagacgatcctgctgccaagatcactcttccatgggatgcccgggtagctgtcgcactcgaagctgcgaaagctctagagtacgccattgccatgatcatcttcaatttgctgaataattcgagtgtttgtcttgctggcttctgaatctgaagtgagtaatcggtaatcgcttctgccattgctgttcttgcgttaggtacctccacgaaggtggtcagagacaggttgtgcaccagcatttcaggcctgaacatgtgctcgtcgacggcgagatgcgtgtgcgcgtgtccggctgcggccttgctgcggctgtgaaatccggcttggatcttcaggtaatcgtttcgtagacaccgcttgatcgatcagcttgttcttggatgtgcatctgatcgatcggtgtcgatttgagcagtcggaatgctggctcgacgcgctgagctacgagccaccggaggcggcggcggcgccatggacggacaagggcgacgtgtacagcttcggggtggtgatgctgcagcttctgacggggcggaggccttacgacggcgcgcggccgcggggcgagaggcggctggtggcgtgggcgagctcgcggctgcacgacctgacggcgctggagaagatggccgacccgcgcctcgggacgccggcgacggtcaggtccatgtcgcggttcgccgacgtcatcagccggtgcacgcagcaggaagcggagttccggccggccatgtcgcaggtggtgcaggatctgcggcgcgcgctgcagcctgcacgcgatgcttgcggacagcagagctgcagcaactga
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| CDS seq | atgcagttcaggctggtgatcttggttctgctcctctcctgctcgcttcagctgcttcgcgcgtttccattccccatcccgttctttggccccttcacgagcccacaagacgttgatgcgataaacgagctgtacgcgtcgctgggctcgcctgacctccatggctgggcttcttcaggaggagacccctgcatggaagcatggcagggggtgcaatgccttggacccaacatcactgcaatagagctcagaggtgcaggcctgggaggaaagctgagtgagacgctggggaagttcactgccatgacagcattggatctgagcagcaaccgcattgggggagtgattcctgagagcttaccacctgcagtaaaacaactgaatttatcttcgaatagtctcagtggcaaactcccagattcgatggcgaagctgaactcgctttcgacactgcatgttcagaacaatcagctcactggcacacttgatggtgaccctccgagacacggcaagaaggtctcgccggcgaaagccgccggattcagcatcctcgccgccggctcactgaccattgccgtggtcctgatcgtcttcgccgtgtcgaaacggcggcgggagacgtctcttcatggaggatttctgagaggagttgagatgagcactccggattggagtgggaagccttcaggacaaagtgcagttgtcaaggtagacaaagaacaaagcacagttgctgaagagaaggataccaagggtagcatttcttcatatcagaagaatgttcaggagagtttacaaaaccatcctttgcaattcaagttcacaatcttcacagttgcatccttgcaacagtataccaacagtttcagtgagcagaatctgatgaggcaaaccctgttcggaaaaatctacctagcagagcagcaagacatcaagtttgcagtactgaagcttgacgaagcgatggcgagaatgccggtggacgagttcttgaggatggttcagagaatctctgaactccagcatcccaacatcgaggagcttgcaggatgctgcgtcgagcacggacagaggctgctcgtctacaagcatttcagcgatgaaactctcgacgacatgatccatctgaagaaactggcatcatcagacgatcctgctgccaagatcactcttccatgggatgcccgggtagctgtcgcactcgaagctgcgaaagctctagagtacctccacgaaggtggtcagagacaggttgtgcaccagcatttcaggcctgaacatgtgctcgtcgacggcgagatgcgtgtgcgcgtgtccggctgcggccttgctgcggctgtgaaatccggcttggatcttcagtcggaatgctggctcgacgcgctgagctacgagccaccggaggcggcggcggcgccatggacggacaagggcgacgtgtacagcttcggggtggtgatgctgcagcttctgacggggcggaggccttacgacggcgcgcggccgcggggcgagaggcggctggtggcgtgggcgagctcgcggctgcacgacctgacggcgctggagaagatggccgacccgcgcctcgggacgccggcgacggtcaggtccatgtcgcggttcgccgacgtcatcagccggtgcacgcagcaggaagcggagttccggccggccatgtcgcaggtggtgcaggatctgcggcgcgcgctgcagcctgcacgcgatgcttgcggacagcagagctgcagcaactga
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| Protein seq | MQFRLVILVLLLSCSLQLLRAFPFPIPFFGPFTSPQDVDAINELYASLGSPDLHGWASSGGDPCMEAWQGVQCLGPNITAIELRGAGLGGKLSETLGKFTAMTALDLSSNRIGGVIPESLPPAVKQLNLSSNSLSGKLPDSMAKLNSLSTLHVQNNQLTGTLDGDPPRHGKKVSPAKAAGFSILAAGSLTIAVVLIVFAVSKRRRETSLHGGFLRGVEMSTPDWSGKPSGQSAVVKVDKEQSTVAEEKDTKGSISSYQKNVQESLQNHPLQFKFTIFTVASLQQYTNSFSEQNLMRQTLFGKIYLAEQQDIKFAVLKLDEAMARMPVDEFLRMVQRISELQHPNIEELAGCCVEHGQRLLVYKHFSDETLDDMIHLKKLASSDDPAAKITLPWDARVAVALEAAKALEYLHEGGQRQVVHQHFRPEHVLVDGEMRVRVSGCGLAAAVKSGLDLQSECWLDALSYEPPEAAAAPWTDKGDVYSFGVVMLQLLTGRRPYDGARPRGERRLVAWASSRLHDLTALEKMADPRLGTPATVRSMSRFADVISRCTQQEAEFRPAMSQVVQDLRRALQPARDACGQQSCSN |
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| Function | Protein STRUBBELIG-RECEPTOR FAMILY 8 [UniProtKB/Swiss-Prot:Q6R2J8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0002870 | OsLima_02g0002870.01 | Chr02 | 1984004 | 1987219 | + | NAM | ||
| CDS seq | atgcagttcaggctggtgatcttggttctgctcctctcctgctcgcttcagctgcttcgcgcgtttccattccccatcccgttctttggccccttcacgagcccacaagacgttgatgcgataaacgagctgtacgcgtcgctgggctcgcctgacctccatggctgggcttcttcaggaggagacccctgcatggaagcatggcagggggtgcaatgccttggacccaacatcactgcaatagagctcagaggtgcaggcctgggaggaaagctgagtgagacgctggggaagttcactgccatgacagcattggatctgagcagcaaccgcattgggggagtgattcctgagagcttaccacctgcagtaaaacaactgaatttatcttcgaatagtctcagtggcaaactcccagattcgatggcgaagctgaactcgctttcgacactgcatgttcagaacaatcagctcactggcacacttgatggtgaccctccgagacacggcaagaaggtctcgccggcgaaagccgccggattcagcatcctcgccgccggctcactgaccattgccgtggtcctgatcgtcttcgccgtgtcgaaacggcggcgggagacgtctcttcatggaggatttctgagaggagttgagatgagcactccggattggagtgggaagccttcaggacaaagtgcagttgtcaaggtagacaaagaacaaagcacagttgctgaagagaaggataccaagggtagcatttcttcatatcagaagaatgttcaggagagtttacaaaaccatcctttgcaattcaagttcacaatcttcacagttgcatccttgcaacagtataccaacagtttcagtgagcagaatctgatgaggcaaaccctgttcggaaaaatctacctagcagagcagcaagacatcaagtttgcagtactgaagcttgacgaagcgatggcgagaatgccggtggacgagttcttgaggatggttcagagaatctctgaactccagcatcccaacatcgaggagcttgcaggatgctgcgtcgagcacggacagaggctgctcgtctacaagcatttcagcgatgaaactctcgacgacatgatccatctgaagaaactggcatcatcagacgatcctgctgccaagatcactcttccatgggatgcccgggtagctgtcgcactcgaagctgcgaaagctctagagtacctccacgaaggtggtcagagacaggttgtgcaccagcatttcaggcctgaacatgtgctcgtcgacggcgagatgcgtgtgcgcgtgtccggctgcggccttgctgcggctgtgaaatccggcttggatcttcagtcggaatgctggctcgacgcgctgagctacgagccaccggaggcggcggcggcgccatggacggacaagggcgacgtgtacagcttcggggtggtgatgctgcagcttctgacggggcggaggccttacgacggcgcgcggccgcggggcgagaggcggctggtggcgtgggcgagctcgcggctgcacgacctgacggcgctggagaagatggccgacccgcgcctcgggacgccggcgacggtcaggtccatgtcgcggttcgccgacgtcatcagccggtgcacgcagcaggaagcggagttccggccggccatgtcgcaggtggtgcaggatctgcggcgcgcgctgcagcctgcacgcgatgcttgcggacagcagagctgcagcaactga
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| Protein seq | MQFRLVILVLLLSCSLQLLRAFPFPIPFFGPFTSPQDVDAINELYASLGSPDLHGWASSGGDPCMEAWQGVQCLGPNITAIELRGAGLGGKLSETLGKFTAMTALDLSSNRIGGVIPESLPPAVKQLNLSSNSLSGKLPDSMAKLNSLSTLHVQNNQLTGTLDGDPPRHGKKVSPAKAAGFSILAAGSLTIAVVLIVFAVSKRRRETSLHGGFLRGVEMSTPDWSGKPSGQSAVVKVDKEQSTVAEEKDTKGSISSYQKNVQESLQNHPLQFKFTIFTVASLQQYTNSFSEQNLMRQTLFGKIYLAEQQDIKFAVLKLDEAMARMPVDEFLRMVQRISELQHPNIEELAGCCVEHGQRLLVYKHFSDETLDDMIHLKKLASSDDPAAKITLPWDARVAVALEAAKALEYLHEGGQRQVVHQHFRPEHVLVDGEMRVRVSGCGLAAAVKSGLDLQSECWLDALSYEPPEAAAAPWTDKGDVYSFGVVMLQLLTGRRPYDGARPRGERRLVAWASSRLHDLTALEKMADPRLGTPATVRSMSRFADVISRCTQQEAEFRPAMSQVVQDLRRALQPARDACGQQSCSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0136900 | RBH | 0.102624 | 0.000000 | 0.250827 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g04430 | RBH | 0.069400 | 0.000000 | 0.064568 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0136900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0002870 | RBH | 0.0 | 0.000000 | 0.166305 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0002950 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0002890 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0002860 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0002890 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0033200 | RBH | 0.8676095 | 1.62432 | 0.2837155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0002800 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0034200 | RBH | 0.816869 | 1.75368 | 1.23817 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0002800 | RBH | 0.0 | 1.894981 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0002870 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0002960 | RBH | 0.104849 | 0.119643 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0002920 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G002900 | RBH | 0.0 | 0.0 | 0.403689 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0002850 | RBH | 0.0 | 0.0 | 0.0 |
