Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0047870 | OGI:01125960 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:44678910-44686241 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctgagatggaagaagcatcaagctagcagtcgatcgatcaatggcaggtggagcgtggttgcagttgcaggtggcgctcctcctcctggtggctctcatcttctcaaccttgtcgccatcggaagcagaagcagctgcggctacttctactaatttgcggcgtcggcaggaggtgcagagcctcctcaagcgcctcaacaagcctcctctcgcaaccattcaggtacctacctaccatttccttttgtgtttttcacatctagctagctagaatgagtacttcatgtagaATatatatatatgcacttctcatctagttgcaaactacaaatatgataaattaaccctatgcagagcccagatggagatatcatagactgtgtgcacatctccaaacagcctgcgttcgatcatcctctcctcaagaaccacacaatccaggtgaattcattaagcaccattatattatgtatatattgcccgccccctaatttcaaatataatttcactctacaccaccaatataatgcatgcatgacatcttcactctacaccaccgatttcagatgcggccttctatccagccaagtggcatgtatggtgaagtggcacgtccattcacccaaacatggaatcaaaatggcgaaaagtgtcccgacaacaccataccaatccgaaggaccaaggaggaggatgtcatgagggccacctctgttgcaacgtttggcaagaagacgcacgggagccatcaccctcgcttggctggtgtcacagatggccaccacgtaccaccctcatctcatattacaactagcttgtctttctagctcgatattggatgattacaaaataaattttcttatttaatctcctattaagcagtatggtgtagcatctgcaattggggatgctaactactacggaaccaaagcgacaatcaatttgtggcaaccaacgattgcaacatctggtgatttcagtctggcccagctatggatctcagcgggctcctatcaaaacaaggaccttaataccattgaagcaggatggcaggtatgtgagaccttaagagcaggatcaatacaagagctagctgctagcttcataatctttccatgtcatcaagagctaacagagagacaacttgtataataattacacataaacatatacttcattaatatatagcccacttctcatacacacacaaagcttagagtctgtgctatagttggctgtaaatctgtagcccactattcttctatctctcctcttatctctcctccaagtaagcataaatgtgatgtggcaatttttgaagcttgcttatgtcacttattatactcgctctaagtgcatcagaggggaaaacgttctattaaatcctacatgcatgccttgcagtttccatgcatgatacatatactagactaggttctcgatctattcatgcaagctcttgtctttgtgcatgccctgatgtccatgttatctacagttagcattgtagataactttctactgattccatgttcagttaataggagtatataaggatgccacaattaatgtacctatgtcccaaaatatttgttgttctaggttgtttagcaaagtataaggtttggtaagaaaaaactatagtgcccttactaaatgatgtaaagttgggtatgagagggtagttgggggtaggatatgatagagaaaattttgaattggaggtgattgatgtggcaaaagataccctaaagtaacaagcttttggggataaattttgaatcctaaagtggtcattattttgggatagaggaagtaactaagtaatctcgataattgtccatcttatggatatctatgtactaaggacatcttcatgtgcatgtaaaggtaatcttaagtattaaattaatatttgtaatccaactttatatattggaaaatcttcataatgtgtatggggactttgaatcttcatgctaaaaggattattagaatttttttatccttggtgggccccaacttaagatgaagaagtgatctcataatcctttcgtcccaatataagtgcaacctactacagatgtgcaactatccagattcatagtcctcacatgtgtactatgttgaacttatattgggacgtagctagggcgtatattgtagcatttgctacatgtaaaaagacacatggctatgagtcccaccttatggtcattgtgtgcttaaacattgaggatgccctaacatcatgatactgttgtatgtatgagtcctaagctttaattttgcaatggttgtgctttctcttatggtgatggcgttgatttatctacgttattgtttcaggtgtacccagctctctatagggatgaaaaaactagattcttcatctattggactgtaagatatataaacataacatatattcctttttaccattattattagtaacaattaatatttcacccatgttctattgcggtgggaattaattaatggcataaaggtactaatggaatatatattgtagcgtgatgcatatgaccaaacgggatgttacaatctagcgtgctcagggttcatccagacaaacacgcaggtcgtcatcggtggcagcatatcccctgtctccatctatggtggctcacaatatgagtacgattatttagtttggaaggtaaaatgtacacaaaaattaagctctttaacactcaaagcatatagacaaaatcaaattcttcatgaatgggcacggagaatctgtgtcatctagctactgatcttgtccttccttaatgcacctttaattcagacttgagttgaagccacaactaactgttgctctagcttatcaggaaaccacacagatggaatcgcagttgtccctatgcactcacgtaatagattaagatttgatgcaaatgcaggaccgttaagttagccatttgaagaaatgttcagacgaataatcttaatatataatcagtttctgcaaggatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataggatggctgttttgtactcccgggagtacatacaccctcccctgatagtggatcatccaataggatccaatttaccagattgaaaaaaaaatgattaataaataaataatgtaattaacaatcggactaataatttgaaaattagtccgcctgttgcatgcaaagtagttacgtttgcattgcacctttttttttgcttcataatattcggtatatatatgtaccagaaccaacgttgaaaatgccttttcttttttagtatccggtatatactgtatgtttatgtgtatgatttagtatgtacaccgtattacatttttttgttgttggattgtatgcatttttttaatatccagtatgtatatacttgatcttttttagtatggcatatacttttttatgttagtaacagtatatacctttttaaattaggagagcaatatatactttttttaatccggtatatactggactagatcatgtactggttggttgtaggtactacgtaccgctttaatttctttgtaggattcagtatatactagaccaaatactgtttttttaggtacgatagctcttccttttttcagggagagtagtagtctttaagtagcagtgtatactattttattttagtaagtcagtaggagtacatactgattttaaacttagttgaagtatatacttgttttaacttagtataagtatataacttcttttaattagtaccagtatatgctacatacttttcaattactagtatatactttttatgagtatatactgttcttaaacttaattagtagccgtatatattttttttatagtaagttaattagaaggagtgcacactgtttttaaacttagtagcagtatataccttttttaacttagtaacagtacatacctttttttcaagttagtaccagtatatagtttttaatgagtatatttttgaacaaacataaagatgtttgataaggaaaaaaatcaaaacaacttataatatgaaatgaagggagtagtataggtaTtttttttccacgtaatagtacgtaccatttttttcttatagaatagaacaatacgtaaatttggtatgtgtagggttgctaattttgaataaactgtatcagtcaatgattgataaagaagtgtcgtcaatcactggcaaagtattgggttgctgcattctgaataaagctaaatgaatgaaatacgctagaagtgcactgaattctgaatagacaattctacatgcaggctaacaaaatcggttagcatcgatgggatcacaccaaacacgcgccagagagggaaatgagtattaatgtgctagcttgctagatcaacggaatcacggactcagcgccgtcgccaaacgaccatacatgctggagtgttctgttgtcagcaccatctatgcccatgatagatgtgtctcgcatctgcatgcaccaaacaaatgcattcatcataggcttaatcattctatatatcaatgtcatacttcatgtttgcatcctcgtctgcaaacaataccagagatatacccaatagaaaaaggaagattatgtattatcattctattggaaaaaattaatcaaacaaaaccggaagaaggaagaaagggcttgccttgatcgttgcacgggcactaaggtcaccggcgctagcttcgatcggtcagccaaggtgaagccaccgccccctccgcgtagacagcgtcaccgcacgggccaccgatggatcgatgccgtgataccgtcgccacaagggccggcaccgcctgggaacgccgtgttgctgcagatgaatattgtcgccgcatcccagcaaatcaccgatggatgttgccgccggcgtggttgctcgatccccaatggatcgtgccgtacctccgctttgagtcgccggtagctagcgctcgatccgaatacagcggagagagcgagctgttgccgtcgcggatgggatgggaaccaagggatttatacgactggttcagaaccgattagtgcgggataattaaacattaggagaatattctttaaaaaaatggaaacgggtccggtgagtgcatccgctaacagggttgatcgtgggtggctactgatcaacggtggatgggagcaggtgtacgtactcctgggagtatagaatcattttcctatatatatatatatatatatatatatatatatatatatatatatggcaacatatcctatgcacacaggccctcacgtgtacacacgtgtacaccaactaaaaaatgtcaccaaaaaatctagaaaaaatcatacccatactttcaattgtattacacctagggttaaaatcttaacgtcaaattcattatattttagccgtaacaaaaaaaacaaaaaatctgacagttttaaggttgtaattttgtcagaattttatcttttttgttattctctatgtagaatgaatttgaagatgcgactttgcacgtagatgtaatactattgaaagtacatgtatgaatttttctagaatttttcgtgataatttttagttggtgtacacggtgtgtacacgcgagggcctgtgtgcataggatacgctccctatatatatatatatatatatatatatatacacacacacacacacacatactggttacatgttcgtgctaacggtaagcaaatgctaattaaacaaacgcttgcaacacatattgtagcatcgagtgtgtgaatacaagtatccatacactagtataaaacaacatttttctagcggccaaaataggttcttgctggtgataggcggcaccaccggcgacctaaggttagtgaaaataatgaattttgactggcgcagacgtccaagctgagaaggtcgtttgtgaaaaagtgattttcgctgacgatggcttaaagagacccgctagaaaaaaaaatatttttaggtaaggcgagggagccgaggggacgagatctggtgggcgatgggaccttttaatacattaaaaaaaattcgaggctagattgggcgaaggagggggtcgcattgaggctaggcagagggggcaccgctaggggcgtgagcggaggggcggcgatggggtgaccggctactgctcccgtgatctggcagcgactgcggagggcaaggagggagacatcgttggcagccgtttgccacaattcggtggtgggcgaggagggagggaggtgtcggcggcgctagagatggagcacaatcggaggggacggcactgggggtgcagggagtagggttgcacggccgtcaagtggaggggtaggagtgcgaaggatcgatctgttcgttggatctcgcgatcgtacggttaatattccgtgggtctgcttgggtgaggattcaagaccaccactacgtttttttataagtagtagagagatatatactgttgcgtaatcaacaatattaatataatatatatcttgctcctgtatatactatataatataagtttgctgaagaacataaaaagtatgcgacaccatttgaaccgatcatacgataccatttgattctgtgttagctagtttctagtgatttagcaggtgtaattctttgtttagttttcttgtttctttgtctctgagaaacgcctaggggttttctgactagctcacaaggtggtgggctagtcggcatgggtttgaagcctcaccctttttatttatttgatattaggtcattccctaatatttcttatttccttgcccctagctaatctattgaaaaagtctgtccttgcaccccataaataaataatcttaattaaactaactaactaattatattaattccctgatcatatgtgtgtgtaattaatctccagtaagtaaattaattaatttgcaggacctagcgggtggtaattggtggttgcaagtgcaaggcaaatatgtgggttactggccatcgtccatcttcacccacttgcagacaggcgttgctgacactgtagaatggggcggggagttgaattcgcctcgaagtaccacacccatgggcagtggacatttccctaaggaaggattcggcaaggccacctacagcaaagcaatccaagttgttgattcctccaacaatcttaaatcaccaaatggtgtgagcttgatagctccactacccaattgctataacgtcatgactggttcctctagtaccacaagctggggcacttacatctactatggcggatctggatgcccttga
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| CDS seq | atggcaggtggagcgtggttgcagttgcaggtggcgctcctcctcctggtggctctcatcttctcaaccttgtcgccatcggaagcagaagcagctgcggctacttctactaatttgcggcgtcggcaggaggtgcagagcctcctcaagcgcctcaacaagcctcctctcgcaaccattcagagcccagatggagatatcatagactgtgtgcacatctccaaacagcctgcgttcgatcatcctctcctcaagaaccacacaatccagatgcggccttctatccagccaagtggcatgtatggtgaagtggcacgtccattcacccaaacatggaatcaaaatggcgaaaagtgtcccgacaacaccataccaatccgaaggaccaaggaggaggatgtcatgagggccacctctgttgcaacgtttggcaagaagacgcacgggagccatcaccctcgcttggctggtgtcacagatggccaccacgtgtacccagctctctatagggatgaaaaaactagattcttcatctattggactcgtgatgcatatgaccaaacgggatgttacaatctagcgtgctcagggttcatccagacaaacacgcaggtcgtcatcggtggcagcatatcccctgtctccatctatggtggctcacaatatgagtacgattatttagtttggaaggacctagcgggtggtaattggtggttgcaagtgcaaggcaaatatgtgggttactggccatcgtccatcttcacccacttgcagacaggcgttgctgacactgtagaatggggcggggagttgaattcgcctcgaagtaccacacccatgggcagtggacatttccctaaggaaggattcggcaaggccacctacagcaaagcaatccaagttgttgattcctccaacaatcttaaatcaccaaatggtgtgagcttgatagctccactacccaattgctataacgtcatgactggttcctctagtaccacaagctggggcacttacatctactatggcggatctggatgcccttga
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| Protein seq | MAGGAWLQLQVALLLLVALIFSTLSPSEAEAAAATSTNLRRRQEVQSLLKRLNKPPLATIQSPDGDIIDCVHISKQPAFDHPLLKNHTIQMRPSIQPSGMYGEVARPFTQTWNQNGEKCPDNTIPIRRTKEEDVMRATSVATFGKKTHGSHHPRLAGVTDGHHVYPALYRDEKTRFFIYWTRDAYDQTGCYNLACSGFIQTNTQVVIGGSISPVSIYGGSQYEYDYLVWKDLAGGNWWLQVQGKYVGYWPSSIFTHLQTGVADTVEWGGELNSPRSTTPMGSGHFPKEGFGKATYSKAIQVVDSSNNLKSPNGVSLIAPLPNCYNVMTGSSSTTSWGTYIYYGGSGCP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0047870 | OsLima_01g0047870.02 | Chr01 | 44678912 | 44679736 | + | NAM | ||
| CDS seq | atggcaggtggagcgtggttgcagttgcaggtggcgctcctcctcctggtggctctcatcttctcaaccttgtcgccatcggaagcagaagcagctgcggctacttctactaatttgcggcgtcggcaggaggtgcagagcctcctcaagcgcctcaacaagcctcctctcgcaaccattcagagcccagatggagatatcatagactgtgtgcacatctccaaacagcctgcgttcgatcatcctctcctcaagaaccacacaatccagatgcggccttctatccagccaagtggcatgtatggtgaagtggcacgtccattcacccaaacatggaatcaaaatggcgaaaagtgtcccgacaacaccataccaatccgaaggaccaaggaggaggatgtcatgagggccacctctgttgcaacgtttggcaagaagacgcacgggagccatcaccctcgcttggctggtgtcacagatggccaccacgtaccaccctcatctcatattacaactagcttgtctttctag
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| Protein seq | MAGGAWLQLQVALLLLVALIFSTLSPSEAEAAAATSTNLRRRQEVQSLLKRLNKPPLATIQSPDGDIIDCVHISKQPAFDHPLLKNHTIQMRPSIQPSGMYGEVARPFTQTWNQNGEKCPDNTIPIRRTKEEDVMRATSVATFGKKTHGSHHPRLAGVTDGHHVPPSSHITTSLSF |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0047870 | OsLima_01g0047870.01 | Chr01 | 44678910 | 44686241 | + | NAM | ||
| CDS seq | atggcaggtggagcgtggttgcagttgcaggtggcgctcctcctcctggtggctctcatcttctcaaccttgtcgccatcggaagcagaagcagctgcggctacttctactaatttgcggcgtcggcaggaggtgcagagcctcctcaagcgcctcaacaagcctcctctcgcaaccattcagagcccagatggagatatcatagactgtgtgcacatctccaaacagcctgcgttcgatcatcctctcctcaagaaccacacaatccagatgcggccttctatccagccaagtggcatgtatggtgaagtggcacgtccattcacccaaacatggaatcaaaatggcgaaaagtgtcccgacaacaccataccaatccgaaggaccaaggaggaggatgtcatgagggccacctctgttgcaacgtttggcaagaagacgcacgggagccatcaccctcgcttggctggtgtcacagatggccaccacgtgtacccagctctctatagggatgaaaaaactagattcttcatctattggactcgtgatgcatatgaccaaacgggatgttacaatctagcgtgctcagggttcatccagacaaacacgcaggtcgtcatcggtggcagcatatcccctgtctccatctatggtggctcacaatatgagtacgattatttagtttggaaggacctagcgggtggtaattggtggttgcaagtgcaaggcaaatatgtgggttactggccatcgtccatcttcacccacttgcagacaggcgttgctgacactgtagaatggggcggggagttgaattcgcctcgaagtaccacacccatgggcagtggacatttccctaaggaaggattcggcaaggccacctacagcaaagcaatccaagttgttgattcctccaacaatcttaaatcaccaaatggtgtgagcttgatagctccactacccaattgctataacgtcatgactggttcctctagtaccacaagctggggcacttacatctactatggcggatctggatgcccttga
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| Protein seq | MAGGAWLQLQVALLLLVALIFSTLSPSEAEAAAATSTNLRRRQEVQSLLKRLNKPPLATIQSPDGDIIDCVHISKQPAFDHPLLKNHTIQMRPSIQPSGMYGEVARPFTQTWNQNGEKCPDNTIPIRRTKEEDVMRATSVATFGKKTHGSHHPRLAGVTDGHHVYPALYRDEKTRFFIYWTRDAYDQTGCYNLACSGFIQTNTQVVIGGSISPVSIYGGSQYEYDYLVWKDLAGGNWWLQVQGKYVGYWPSSIFTHLQTGVADTVEWGGELNSPRSTTPMGSGHFPKEGFGKATYSKAIQVVDSSNNLKSPNGVSLIAPLPNCYNVMTGSSSTTSWGTYIYYGGSGCP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.048710 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0973100 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g74160 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0973100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0048770 | RBH | 0.206448 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0048260 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0048650 | RBH | 0.263876 | 0.0 | 0.414848 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0048190 | RBH | 0.068047 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0047720 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0706000 | RBH | 0.076713 | 0 | 0.0071745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0047190 | RBH | 0.269133 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0707600 | RBH | 1.825145 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020310 | SBH | 0.0 | 3.430022 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0047660 | RBH | 0.167802 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0047960 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0047920 | RBH | 1.117014 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0047680 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G048010 | RBH | 0.040238 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0047760 | RBH | 0.0 | 0.0 | 0.722093 |
