Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0020310 | OGI:01065240 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:21757447-21760356 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aagcaagcactgcagcgagccgaagaagcttagctttaagcagcagctagcaatggcagcagcaagggcgtgcttggtggtggcgctcctcctcctggtggctctcttctcgccatcggaagctacttcgtctacttctttgcggcggcggcaggtgcggagcctcctcaagcgcctcaacaagcctcccctcgcaacctttcaggtacgtacctttggcatttcacatctagttgcatgcaaactagctaattatatactacgacttattacatatatgatcataaattaactggcatgcagagcctagatggagatatcatagattgtgtgcacatctccaatcaacctgcattcgaccatcctcttctcaaggaccatacaatccaggtgaattaacttcatatataattccactctacaccatcaatataatgcatgcatgatatcttcacgtacgaataatataatgtatgcatgatatctttatgaacgaataatgtatatgtgtggcggtttcagatgcgaccttctatccagccaagtggcctatatggagaagcaacacgtccattcacccaaacatggaatcagaatggcgaaaagtgccctgacaatactataccgatccgaaggaccaaggaggaggatgtcatgagggccacctctgttacaacgtttggcaagaagacgcacggcgggagccctcaccctcactctcacttgggtggtgtcacggacggccaccacgtatagtaccaccctcagatcatattacaattaacttgtcttcctcgattttggattattattattattattattattattattattattattattattattattattattattattattattgtagttttcaaaataaaatttcttatttaatattccattgagcagtatggtgtagcatatgcgactggggattccaactactacggaaccaaagtgaccatcaatgtgtggcaaccaacgattgcaacattcggtgatttcagcttgtcccagctatggatcacagcgggctcctatgaaaacaaggaccttaataccattgaagcaggatggcaggtacatgacacctaaagagcaagatcaatacaagagctagttaccttcaaaatatttccatgtcatcaagagctaacatagagccaactagtacaatagttacacataaacatacacacatcattaatatacgaccaacctcttatacacattaatgtctaacttgaagtttgtggtacaactgattgtaactttgtagctcgcttttgttctttctcgcctctcatctctccttcacacaagtataaatatgatgtggtaatttttaaagcctgcttatgtcacttatatattgtgcttgctctaagtagttctattaaatcctatctgcatgtcttacagttttcatgcatggtacatatactagactaggttctcaatccattcatgcaagctcttgtctttgtgcttgccctgacatccatgttatctacagatagcatcgaagataattttctacagatttcatgttcaatttttatatatataaggatgccacaattaatataactacataatcttgataagtgaccagtcttatggatatctatctactaataacatcatagtttgttgtacaagtcctaagcattaattttgcaatgattgtgcattctcttacgatgatgtctctgagctatctatattaatgtttcaggtgtacccagctatgtacggggatgataaaactagactcttcatctattggactgtaagatatacgaacataacacatatatgtatattcctttactattagtaacaattaatatttcgtccctgttctattacggtggggaattaattgatagcacaaaggtactaatggaatatatattgtagcgtgatgcatataacacaacgggatgttacaatctagcgtgctcagggttcatccagacaaacccgcagttcgtcatcggtggcagcttatcccctgtctccatctatggcagcacacaatatgagtatgattatttagtttggaaggtaaacagtaaacaaaaattaaactctttatcattcaaagcatatatacaaaatcaaattcttcaagaataggcatggagaatctgtgccatctagccactcatcttgtccttcctctagtaaatgatgaatgaatgaatacaatttgcaggacccagcggggggcaactggtggttgcaactgcaaggcaattatgtgggctactggccatcatccatctttaccctcctgcagacaggcgttgccgatactgtggaatggggtggggaggtgtattctcctcaaattaccgcacccatgggcagtggacatttccctgaggaagggtttggcaaggccacctacagtagagcaatccaagttgttgattcctccaaccatctcaaaccaccaaatggtgtgggcttgatagcctcgctgcccaattgctataatatcatgactggttcctccagtaccactagttggggcacttacatttactatggtggacctgggtgccctcaaaactcccaaattgaagtgatgtagagagagatcgagctcacgatcaaactacgtacatcacattaataatttacatgtagtactacacgatcaacatcgctcgctcgcccaataatatagtattgttggatagggtctatactagctaatattacatgccgcatgtcaagctctgattgctagtacgtatgtatatgtatacatttgcatgtattggtaagaggtttgaaccaagctagcattacaagctggcaataaatgtattgtcacagtttactggaagttatgttatggaatatacttatttaatcattagttattac
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| CDS seq | atggcagcagcaagggcgtgcttggtggtggcgctcctcctcctggtggctctcttctcgccatcggaagctacttcgtctacttctttgcggcggcggcaggtgcggagcctcctcaagcgcctcaacaagcctcccctcgcaacctttcagagcctagatggagatatcatagattgtgtgcacatctccaatcaacctgcattcgaccatcctcttctcaaggaccatacaatccagatgcgaccttctatccagccaagtggcctatatggagaagcaacacgtccattcacccaaacatggaatcagaatggcgaaaagtgccctgacaatactataccgatccgaaggaccaaggaggaggatgtcatgagggccacctctgttacaacgtttggcaagaagacgcacggcgggagccctcaccctcactctcacttgggtggtgtcacggacggccaccactatggtgtagcatatgcgactggggattccaactactacggaaccaaagtgaccatcaatgtgtacccagctatgtacggggatgataaaactagactcttcatctattggactcgtgatgcatataacacaacgggatgttacaatctagcgtgctcagggttcatccagacaaacccgcagttcgtcatcggtggcagcttatcccctgtctccatctatggcagcacacaatatgagtatgattatttagtttggaaggacccagcggggggcaactggtggttgcaactgcaaggcaattatgtgggctactggccatcatccatctttaccctcctgcagacaggcgttgccgatactgtggaatggggtggggaggtgtattctcctcaaattaccgcacccatgggcagtggacatttccctgaggaagggtttggcaaggccacctacagtagagcaatccaagttgttgattcctccaaccatctcaaaccaccaaatggtgtgggcttgatagcctcgctgcccaattgctataatatcatgactggttcctccagtaccactagttggggcacttacatttactatggtggacctgggtgccctcaaaactcccaaattgaagtgatgtag
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| Protein seq | MAAARACLVVALLLLVALFSPSEATSSTSLRRRQVRSLLKRLNKPPLATFQSLDGDIIDCVHISNQPAFDHPLLKDHTIQMRPSIQPSGLYGEATRPFTQTWNQNGEKCPDNTIPIRRTKEEDVMRATSVTTFGKKTHGGSPHPHSHLGGVTDGHHYGVAYATGDSNYYGTKVTINVYPAMYGDDKTRLFIYWTRDAYNTTGCYNLACSGFIQTNPQFVIGGSLSPVSIYGSTQYEYDYLVWKDPAGGNWWLQLQGNYVGYWPSSIFTLLQTGVADTVEWGGEVYSPQITAPMGSGHFPEEGFGKATYSRAIQVVDSSNHLKPPNGVGLIASLPNCYNIMTGSSSTTSWGTYIYYGGPGCPQNSQIEVM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0020310 | OsLima_01g0020310.01 | Chr01 | 21757466 | 21760356 | + | NAM | ||
| CDS seq | atggcagcagcaagggcgtgcttggtggtggcgctcctcctcctggtggctctcttctcgccatcggaagctacttcgtctacttctttgcggcggcggcaggtgcggagcctcctcaagcgcctcaacaagcctcccctcgcaacctttcagagcctagatggagatatcatagattgtgtgcacatctccaatcaacctgcattcgaccatcctcttctcaaggaccatacaatccagatgcgaccttctatccagccaagtggcctatatggagaagcaacacgtccattcacccaaacatggaatcagaatggcgaaaagtgccctgacaatactataccgatccgaaggaccaaggaggaggatgtcatgagggccacctctgttacaacgtttggcaagaagacgcacggcgggagccctcaccctcactctcacttgggtggtgtcacggacggccaccactatggtgtagcatatgcgactggggattccaactactacggaaccaaagtgaccatcaatgtgtacccagctatgtacggggatgataaaactagactcttcatctattggactcgtgatgcatataacacaacgggatgttacaatctagcgtgctcagggttcatccagacaaacccgcagttcgtcatcggtggcagcttatcccctgtctccatctatggcagcacacaatatgagtatgattatttagtttggaaggacccagcggggggcaactggtggttgcaactgcaaggcaattatgtgggctactggccatcatccatctttaccctcctgcagacaggcgttgccgatactgtggaatggggtggggaggtgtattctcctcaaattaccgcacccatgggcagtggacatttccctgaggaagggtttggcaaggccacctacagtagagcaatccaagttgttgattcctccaaccatctcaaaccaccaaatggtgtgggcttgatagcctcgctgcccaattgctataatatcatgactggttcctccagtaccactagttggggcacttacatttactatggtggacctgggtgccctcaaaactcccaaattgaagtgatgtag
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| Protein seq | MAAARACLVVALLLLVALFSPSEATSSTSLRRRQVRSLLKRLNKPPLATFQSLDGDIIDCVHISNQPAFDHPLLKDHTIQMRPSIQPSGLYGEATRPFTQTWNQNGEKCPDNTIPIRRTKEEDVMRATSVTTFGKKTHGGSPHPHSHLGGVTDGHHYGVAYATGDSNYYGTKVTINVYPAMYGDDKTRLFIYWTRDAYNTTGCYNLACSGFIQTNPQFVIGGSLSPVSIYGSTQYEYDYLVWKDPAGGNWWLQLQGNYVGYWPSSIFTLLQTGVADTVEWGGEVYSPQITAPMGSGHFPEEGFGKATYSRAIQVVDSSNHLKPPNGVGLIASLPNCYNIMTGSSSTTSWGTYIYYGGPGCPQNSQIEVM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0020310 | OsLima_01g0020310.02 | Chr01 | 21757447 | 21760347 | + | IsoSeq | ||
| CDS seq | atgtgggctactggccatcatccatctttaccctcctgcagacaggcgttgccgatactgtggaatggggtggggaggtgtattctcctcaaattaccgcacccatgggcagtggacatttccctgaggaagggtttggcaaggccacctacagtagagcaatccaagttgttgattcctccaaccatctcaaaccaccaaatggtgtgg
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| Protein seq | MWATGHHPSLPSCRQALPILWNGVGRCILLKLPHPWAVDISLRKGLARPPTVEQSKLLIPPTISNHQMVW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr01 | 21758424 | 21759194 | + | OsLima_01g0020310.02 | OsLima_01g0020310.01,OsLima_01g0020310.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.430022 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0550800 | RBH | 0.0 | 0.0 | 0.384483 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g37000 | RBH | 0.0 | 0.0 | 0.098529 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0550800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0021130 | RBH | 0.0 | 339.028320 | 21.158550 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020740 | RBH | 0.0 | 9.957548 | 0.300304 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0021070 | RBH | 0.0 | 133.912277 | 19.184370 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0020460 | RBH | 0.000000 | 3.103508 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0020340 | RBH | 0.000000 | 22.999359 | 10.156430 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0349700 | SBH | 0.03557 | 0.6466685 | 0.322902 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0020290 | RBH | 0.0 | 17.204107 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0344600 | RBH | 14.8292385 | 15.107785 | 0.005795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0011420 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020220 | RBH | 0.0 | 15.480530 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0020470 | RBH | 0.0 | 165.302200 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0020380 | RBH | 0.0 | 7.830809 | 0.148702 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0020260 | RBH | 0.0 | 40.822987 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G020910 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0020640 | RBH | 0.0 | 189.511703 | 0.997985 |
