Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0047680 | OGI:01125720 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:44566134-44571163 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taacaaatattttctgtaatgtattatatatggaaattgtttcagcattacccaagacacagcaatcagacagacagaggtagcgaaccaacaggcagtagctaagcaaaactgcaaaagaagatgtggggaagaaaagaaggcaggcagcaacctgtagtaaaagtcggtgcctggaaagaaatgttgacgaaactgatggggatgctggtacatgaagatatgtgccggtacatgaagatgcctatgcgataatattcggcatgtattattgttggcagagtgcgaggagcatcttcaaagaccaaatatcttgagcatataatcatcatatcgctgctctctgttaccaatctttgtcttgccAaactccgtcaagcatggagtgcttgaactgacccagctgggaatctatccatccaatctaagctgccatcacattcagccacagtttttgccctctgCctctgctgaaaatccatcgctcgagcaactctgcAaataaacgaaagaacaggttattgaaccacgcacgtgaaaagatgaccaagacaaggaaaagcaaccaatagtttttttttcaagtaagggaaaaggcatcgaatagttcgtttcaaaagaaagaaatatcagggtatcatatgcatgatgataacttttcagttagtggaaacgtgttacatgtaccagaatactacttgcagcatctacaggtggatccaaaattgttcagattatatttcaaaacctttagagcattgcctcaaattcatgtgaccatctaataacgctaagtaacatttcagaaaaagtttctagctgtttttattcatgctgcggcacaacattacacaatgtctagtaagatgaatcaaagttatactttggggctcctccccacagtggttcagtAaaaaaaaaaaaaaggaatcaaagtttctgtgggtaagaaaggacaaaatattgttcacttaatttccactgaaattaacaaacataacatgcctgggatttcttaatattgtcacacttaacagaaaacgaaaaacattgcacacacttggtcccaggtcagcacatgattgaaggtagctattattattgtcaaagggagaaaacaactcaatgatttctactgcaagtgataagaagaaactgcccatggaacttagctttagttaaagtctaggtagccaaattatgcaagagatgacggttaggtcgtgtgctgcctaacaaatttgaatgaagaaagacaacaagatgaaacaaataagattcgttcaaatttgtcagaggtagggaataagattctcacttatcctccaaaaatgcacattctccttcgcctataaaagaggacaagaaaacatagcttccgcaaaccagttccatcccttcctacacttcctcaatacctttacaaggagccaggcaacaatgtctcactctcataatcaggtcctctatttccaagcccaaagaaaggtcagatttcaggataaccaagccaatattatgaaggaagtaccaataggaacaaatgagaagttggtgcatgaccaaaggatgaaagatgacaagaacaaggatgtagattcagtagcttcagacttcatcaagctcaagcacagggcttgggcactgcagaagagcgcaagcatgtatcaaccttcttAaatgcggttccaatagtatggtattctccacttatgcgtcttcactacataggctctggtttgaataagacatgttgcttgaaagagccatggctatcgccaagttgtgctactatggtattgctatttgcaatatatgaataagaaagtattgtgtctgtactattatttgccgcacgcccgcacaaatgtatgtgataccttttatgttaacatgaccatattttaaattgttaatattgcaatgtggaactagactactattgtttgcagcaggatgtacagcatacctttttttgtgaatatgagggcattttAtttatactattatcgttccgacatatttctatttgaaaagttacaaagttaaaagcagcgaacagaaccaggtcaaccacttttgccaaaccctgtcaagaacaacatagcacgcaagccctcatggctacaagtgggtattgatgcacatcagacaacaaaggagtcagacgcttttgaggaacctttgttcgtcctaatgtaaaagaaaatagatttcctgacatattaatcttctctaaccagctaagaggaagcaaacctatggaccattaagttcctgatttctcctttaagttacaatgcaaaatcgatcaacaaggtgttttatcccaaaaaggaataaaaaaaggtgcgattgcaatcccaaattaatgctagaccatagatgcatataacttagaaaaataattatgctgacaaaataactttcacaagcatgttgtaggaaccaaaggcttgtgagtaggaaataatgtgattataacatagccactgacataagtcaagagtttttccctctgataagggattatatagcatcatcgactcatcgtgtatgtggtgctaattgatgtcatcactgaacaccaaggaatgatataacaccatttgatatttggtgttgtatcctgcagtataatctatcaattatcaagtattactacaaaggcagagcttcgAaaaaaagactataacattatggcataatttggcagcaaactatggagtttttatcgctaacgatagttgaggcaaggattcaaattctgcttttccAAaaaaaaaaataaaaaatctccagacttggctagaagtggccaattactggtcaaatataagccataccTttttgtcccggcttttcttttgaataacgacatctaataacaaatacagaaataacatattctttctggtattttctgctcatggaacggtggtatcgacctctcttaatatgtgcaggcaacattattggtactatagtagtattactggaagaatttccaatgtacgttcaccaaaaaaatgtgcagatgtgctttaatttgaatggtaactttaggaaaggccatctatgcagctgcaatgatactgtcaacagtaaaagaaacaagtgtggcacaggaaagttaattcagcaaaaatatcctttagatgtggcaactatcacaccatgattactaaacaacatctagtgagtataaaaaggtaggtgcttgccgtaatctcaccaataatttcttgcacttcatcaagccgcactctcactttcaacttttattgattcaaacaactcggtgacatcaggatgcttgcggatatggaaagggcatttatacagtaaatcctgagcttctgaatatcttccctctgtgaaaaatgacttgaaaacatgcagataggcagtgggtgatgggtacttgttattcaccgtcaaggccttgagaaactgccttgcatcatcaaatgtcccgtacttggcgatgtgagtagggaatgggtctgcaaaaggtgggaacttgcgtgctttcattgatctcaggagacccagagcctcctcaagtttctttaccctcagcaattcaccaattatatgcttgtaagtgccttgccaagggctcaagttggccttgtctaccatctcaacaaagaaagcatacgacgcatcaatcttatcatcgctacagagacctttcaccattacatccaacaaagccgcatctgcctccaaattcttctcaaccatttccgtgaagtactgcaGggccttttccacctccccagccgcacagtgaccttggatcaacatGgtccaagtctttaagtcGgggacacacccttcagcctccatttcatcaagcgctttgcgagcttcatcaaacctgtttgccttgcagagcccaaagatcagttggctatacgtaatattgtctggctgatgaccttcgcctttcatcctcttcacgatctcggcagcctcatcaaacctcccattactcgtcagcgccctatggatgccatcaaaaacatccttagtcttgaactcccacaccgcctcgaacttcctaaccacacgatagaccagctcaaggtccggcgaaggccccagagcaatgcgcctgatgagcaccggaccatcctgcttcgatggcttgtaaggaccatccatcatgagctcatagagctccacggcctccgtgagcatgtggcgcttctggaactgcctcgagagcttcacataggtgtcgatatcgacatgaatcccgtcggccttcatctcttggatgaggtcccagaactcccgcatggactcctctcgcccgagcaccctcaccatggcattgtaagacaccgaaccgtgcttgtacccaatctgacgccccgcccacctgaagaaggctagagccttgatcggatggtccctcacctcccggagcaccctggccacggcggtctccgtgagcggcaggtcgacgccctccagcttctcgtcgagctccgcgctagcatccgaatccgagccatcctcgagggcacggacggcgtcggcggcggcggaggtgggggtcccacccttggcgtgctcctgggccttggcgtagtgggcggtgagggaggcgtagtcggcggtgaggctggccttcttgaaggaggcgagggcggcgaggtaggtgccctggtcgatggagtggccggcgtcgttcatgtcgcggaggaagggccagaagtgggagtgcgcggaggtggggtgggaggcgagggtgcggagcatgaggttgtaggcggcggatcccagcgggtggccgccggcctgggagcggcggaagaaggcgagcgcgacggaggggtccttggagagggtgcggagggagtagaggacggattccggggtcggggcggtggcggtggcggcggcggtggagaagaggcggcggaggcgggagaaggcggtgggcggcggcggcggcgccatctctctctcagttggggtttctctagggcttttggttactcaaggtgctcgac
More
|
||||||||||
| CDS seq | atggcgccgccgccgccgcccaccgccttctcccgcctccgccgcctcttctccaccgccgccgccaccgccaccgccccgaccccggaatccgtcctctactccctccgcaccctctccaaggacccctccgtcgcgctcgccttcttccgccgctcccaggccggcggccacccgctgggatccgccgcctacaacctcatgctccgcaccctcgcctcccaccccacctccgcgcactcccacttctggcccttcctccgcgacatgaacgacgccggccactccatcgaccagggcacctacctcgccgccctcgcctccttcaagaaggccagcctcaccgccgactacgcctccctcaccgcccactacgccaaggcccaggagcacgccaagggtgggacccccacctccgccgccgccgacgccgtccgtgccctcgaggatggctcggattcggatgctagcgcggagctcgacgagaagctggagggcgtcgacctgccgctcacggagaccgccgtggccagggtgctccgggaggtgagggaccatccgatcaaggctctagccttcttcaggtgggcggggcgtcagattgggtacaagcacggttcggtgtcttacaatgccatggtgagggtgctcgggcgagaggagtccatgcgggagttctgggacctcatccaagagatgaaggccgacgggattcatgtcgatatcgacacctatgtgaagctctcgaggcagttccagaagcgccacatgctcacggaggccgtggagctctatgagctcatgatggatggtccttacaagccatcgaagcaggatggtccggtgctcatcaggcgcattgctctggggccttcgccggaccttgagctggtctatcgtgtggttaggaagttcgaggcggtgtgggagttcaagactaaggatgtttttgatggcatccatagggcgctgacgagtaatgggaggtttgatgaggctgccgagatcgtgaagaggatgaaaggcgaaggtcatcagccagacaatattacgtatagccaactgatctttgggctctgcaaggcaaacaggtttgatgaagctcgcaaagcgcttgatgaaatggaggctgaagggtgtgtcccCgacttaaagacttggacCatgttgatccaaggtcactgtgcggctggggaggtggaaaaggccCtgcagtacttcacggaaatggttgagaagaatttggaggcagatgcggctttgttggatgtaatggtgaaaggtctctgtagcgatgataagattgatgcgtcgtatgctttctttgttgagatggtagacaaggccaacttgagcccttggcaaggcacttacaagcatataattggtgaattgctgagggtaaagaaacttgaggaggctctgggtctcctgagatcaatgaaagcacgcaagttcccaccttttgcagacccattccctactcacatcgccaagtacgggacatttgatgatgcaaggcagtttctcaaggccttgacggtgaataacaagtacccatcacccactgcctatctgcatgttttcaagtcatttttcacagagggaagatattcagaagctcaggatttactgtataaatgccctttccatatccgcaagcatcctgatgtcaccgagttgtttgaatcaataaaagttgaaagtgagagtgcggcttga
More
|
||||||||||
| Protein seq | MAPPPPPTAFSRLRRLFSTAAATATAPTPESVLYSLRTLSKDPSVALAFFRRSQAGGHPLGSAAYNLMLRTLASHPTSAHSHFWPFLRDMNDAGHSIDQGTYLAALASFKKASLTADYASLTAHYAKAQEHAKGGTPTSAAADAVRALEDGSDSDASAELDEKLEGVDLPLTETAVARVLREVRDHPIKALAFFRWAGRQIGYKHGSVSYNAMVRVLGREESMREFWDLIQEMKADGIHVDIDTYVKLSRQFQKRHMLTEAVELYELMMDGPYKPSKQDGPVLIRRIALGPSPDLELVYRVVRKFEAVWEFKTKDVFDGIHRALTSNGRFDEAAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTWTMLIQGHCAAGEVEKALQYFTEMVEKNLEADAALLDVMVKGLCSDDKIDASYAFFVEMVDKANLSPWQGTYKHIIGELLRVKKLEEALGLLRSMKARKFPPFADPFPTHIAKYGTFDDARQFLKALTVNNKYPSPTAYLHVFKSFFTEGRYSEAQDLLYKCPFHIRKHPDVTELFESIKVESESAA |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [UniProtKB/Swiss-Prot:Q9STK5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0047680 | OsLima_01g0047680.01 | Chr01 | 44566134 | 44571163 | - | NAM | ||
| CDS seq | atggcgccgccgccgccgcccaccgccttctcccgcctccgccgcctcttctccaccgccgccgccaccgccaccgccccgaccccggaatccgtcctctactccctccgcaccctctccaaggacccctccgtcgcgctcgccttcttccgccgctcccaggccggcggccacccgctgggatccgccgcctacaacctcatgctccgcaccctcgcctcccaccccacctccgcgcactcccacttctggcccttcctccgcgacatgaacgacgccggccactccatcgaccagggcacctacctcgccgccctcgcctccttcaagaaggccagcctcaccgccgactacgcctccctcaccgcccactacgccaaggcccaggagcacgccaagggtgggacccccacctccgccgccgccgacgccgtccgtgccctcgaggatggctcggattcggatgctagcgcggagctcgacgagaagctggagggcgtcgacctgccgctcacggagaccgccgtggccagggtgctccgggaggtgagggaccatccgatcaaggctctagccttcttcaggtgggcggggcgtcagattgggtacaagcacggttcggtgtcttacaatgccatggtgagggtgctcgggcgagaggagtccatgcgggagttctgggacctcatccaagagatgaaggccgacgggattcatgtcgatatcgacacctatgtgaagctctcgaggcagttccagaagcgccacatgctcacggaggccgtggagctctatgagctcatgatggatggtccttacaagccatcgaagcaggatggtccggtgctcatcaggcgcattgctctggggccttcgccggaccttgagctggtctatcgtgtggttaggaagttcgaggcggtgtgggagttcaagactaaggatgtttttgatggcatccatagggcgctgacgagtaatgggaggtttgatgaggctgccgagatcgtgaagaggatgaaaggcgaaggtcatcagccagacaatattacgtatagccaactgatctttgggctctgcaaggcaaacaggtttgatgaagctcgcaaagcgcttgatgaaatggaggctgaagggtgtgtcccCgacttaaagacttggacCatgttgatccaaggtcactgtgcggctggggaggtggaaaaggccCtgcagtacttcacggaaatggttgagaagaatttggaggcagatgcggctttgttggatgtaatggtgaaaggtctctgtagcgatgataagattgatgcgtcgtatgctttctttgttgagatggtagacaaggccaacttgagcccttggcaaggcacttacaagcatataattggtgaattgctgagggtaaagaaacttgaggaggctctgggtctcctgagatcaatgaaagcacgcaagttcccaccttttgcagacccattccctactcacatcgccaagtacgggacatttgatgatgcaaggcagtttctcaaggccttgacggtgaataacaagtacccatcacccactgcctatctgcatgttttcaagtcatttttcacagagggaagatattcagaagctcaggatttactgtataaatgccctttccatatccgcaagcatcctgatgtcaccgagttgtttgaatcaataaaagttgaaagtgagagtgcggcttga
More
|
|||||||
| Protein seq | MAPPPPPTAFSRLRRLFSTAAATATAPTPESVLYSLRTLSKDPSVALAFFRRSQAGGHPLGSAAYNLMLRTLASHPTSAHSHFWPFLRDMNDAGHSIDQGTYLAALASFKKASLTADYASLTAHYAKAQEHAKGGTPTSAAADAVRALEDGSDSDASAELDEKLEGVDLPLTETAVARVLREVRDHPIKALAFFRWAGRQIGYKHGSVSYNAMVRVLGREESMREFWDLIQEMKADGIHVDIDTYVKLSRQFQKRHMLTEAVELYELMMDGPYKPSKQDGPVLIRRIALGPSPDLELVYRVVRKFEAVWEFKTKDVFDGIHRALTSNGRFDEAAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTWTMLIQGHCAAGEVEKALQYFTEMVEKNLEADAALLDVMVKGLCSDDKIDASYAFFVEMVDKANLSPWQGTYKHIIGELLRVKKLEEALGLLRSMKARKFPPFADPFPTHIAKYGTFDDARQFLKALTVNNKYPSPTAYLHVFKSFFTEGRYSEAQDLLYKCPFHIRKHPDVTELFESIKVESESAA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.180284 | 0.158655 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0970900 | RBH | 2.195400 | 3.299183 | 2.554726 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g73950 | RBH | 1.472819 | 2.204170 | 0.652497 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0970900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0048580 | RBH | 0.123414 | 3.405683 | 3.002828 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0048070 | RBH | 0.219839 | 2.298841 | 2.052095 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0048460 | RBH | 0.981365 | 6.916632 | 6.366072 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0048000 | RBH | 0.284202 | 0.278208 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0047540 | RBH | 1.097320 | 6.021354 | 8.347736 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0704600 | RBH | 2.899381 | 5.425348 | 2.023723 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0047010 | RBH | 0.336688 | 0.230790 | 0.501966 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0705400 | RBH | 2.0249915 | 3.7019985 | 11.1206575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0000980 | SBH | 0.0 | 0.048199 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0047470 | RBH | 0.352026 | 10.506351 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0047780 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0047740 | RBH | 0.320886 | 0.718405 | 0.720045 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0047490 | RBH | 0.000000 | 0.605533 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G047820 | RBH | 0.396567 | 3.588328 | 0.935275 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0047570 | RBH | 1.243272 | 8.627350 | 2.931453 |
