Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsIR64_01g0047010 OGI:01125720 | 16/16 IR 64 | OsIR64RS1 | Gramene(+IsoSeq) Chr01:43962133-43967168
Gene Symbol -
DNA seq

ACAAGCTGTAACAAATATTTTCTGTAATGTATTATATATGGAAATTGTTTCAGCATTACCCAAGACACAGCAATCAGACAGACAGAGGTAGCGAACCAACAGGCAGTAGCTAAGCAAAACTGCAAAAGGAGATGTGGGGAAGAAAAGAAGGCAGGCAGCAACCTGTAATAAAAGTCGGTGCCTGGAAAGAAATGTTGACGAAACTGATGGGGATGCTGGTACATGAAAGATATGTGCCGGTACATGAAGATGCCTATGCGATAATATTCGGCATGTATTATTGTTGGCAGAGTGCGAGGAGCATCTTCAAAGACCAAATATCTTGAGCATATAATCATCATATCGCTGCTCTCTGTTACCAATCTTTGTCTTGCCAAACTCCGTCAAGCATGGAGTGCTTGAACTGACCCAGCTGGGAATCTATCCATCCAATCTAAGCTGCCATCACATTCAGCCACAGTTTTTGCCCTCTGCCTCTGCTGAAAATCCATCGCTCGAGCAACTCTGCAAATAAACGAAAGAACAGGTTATTGAACCACGCACGTGAAAAGATGACCAAGACAAGGAAAAGCAACCAATAGTTTTTTTTTTCAAGTAAGGGAAAAGGCATCGAATAGTTCGTTTCAAAAGAAAGAAATATCAGGGTATCATATGCATGATGATAACTTTTCAGTTAGTGGAAACGTGTTACATGTACCAGAATACTACTTGCAGCATCTACAGATGGATCCAAAATTGTTCAGATTATATTTCAAAACCTTTAGAGCATTGCCTCAAATTCATGTGACCATCTAATAACGCTAAGTAACATTTCAGAAAAAGTTTCTAGCTGTTTTTATTCATGCTGCGGCACAACATTACACAATGTCTAGTAAGATGAATCAAAGTTATACTTTGGGGCTCCTCCCCACAGTGGTTCAGTAAAAAAAAAAAAGGAATCAAAGTTTCTGTGGGTAAGAAAGGACAAAATATTGTTCACTTAATTTCCACTGAAATTAACAAACATAACATGCCTGGGATTTCTTAATATTGTCACACTTAACAGAAAACGAAAAACATTGCACACACTTGGTCCCAGGTCAGCACATGATTGAAGGTAGCTATTATTATTGTCAAAGGGAGAAAACAACTCAATGATTTCTACTGCAAGTGATAAGAAGAAACTGCCCATGGAACTTAGCTTTAGTTAAAGTCTAGGTAGCCAAATTATGCAAGAGATGACGGTTAGGTCGTGTGCTGCCTAACAAATTTGAATGAAGAAAGACAACAAGATGAAACAAATAAGATTCGTTCAAATTTGTCAGAGGTAGGGAATAAGATTCTCGCTTATCCTCCAAAAATGCACATCCTCCTTCGCCTATAAAAGAGGACAAGAAAACATAGCTTCCGCAAACCAGTTCCATCCCTTCCTACACTTCCTCAATACCTTTACAAGGAGCCAGGCAACAATGTCTCACTCTCATAATCAGGTCCTCTATTTCCAAGCCCAAAGAAAGGTCAGATTTCAGGATAACCAAGCCAATATTATGAAGGAAGTACCAATAGGAACAAATGAGAAGTTGGTGCATGACCAAAGGATGAAAGATGACAAGAACAAGGATGTAGATTCAGTAGCTTCAGACTTCATCAAGCTCAAGCACAGGGCTTGGGCACTGCAGAAGAGCGCAAGCATGTATCAACCTTCTTAAATGCGGTTCCAATAGTATGGTATTCTCCACTTATGCGTCTTCACTACATAGGCTCTGGTTTGAATAAGACATGTTGCTTGAAAGAGCCATGGCTATCGCCAAGTTGTGCTACTATGGTATTGCTATTTGCAATATATGAATAAGAAAGTATTGTGTCTGTACTATTATTTGCCGCACGCCCGCACAAATGTATGTGATACCTTTTATGTTAACATGACCATATTTTAAATTGTTAATATTGCAATGTGGAACTAGACTACTATTGTTTGCAGCAGGATGTACAGCATACCTTTTTTTGTGAATATGAGGGCATTTTATTTATACTATTATCGTTCCGACATATTTCTATTTGAAAAGTTACAAAGTTAAAAGCAGCGAACAGAACCAGGTCAACCACTTTTGCCAAACCCTGTCAAGAACAACATAGCACGCAAGCCCTCATGGCTACAAGTGGGTATTGATGCACATCAGACAACAAAGGAGTCAGACGCTTTTGAGGAACCTTTGTTCGTCCTAATGTAAAAGAAAATAGATTTCCTGACATATTAATCTTCTCTAACCAGCTAAGAGGAAGCAAACCTATGGACCATTAAGTTCCTGATTTCTCCTTTAAGTTACAATGCAAAATCGATCAACAAGGTGTTTTATCCCAAAAAGGAATAAAAAAAGGTGCGATTGCAATCCCAAATTAATGCTAGACCATAGCTGCATATAACTTAGAAAAATAATTATGCTGACAAAATAACTTTCACAAGCATGTTGTAGGAACCAAAGGCTTGTGAGTAGGAAATAATGTGATTATAACATAGCCACTGACATAAGTCAAGAGTTTTTCCCTCTGATAAGGGATTATATAGCATCATCGACTCATCGTGTATGTGGTGCTAATTGATGTCATCACTGAACACCAAGGAATGATATAACACCATTTGATATTTGGTGTTGTATCCTGCAGTATAATCTATCAATTATCAAGTATTACTACAAAGGCAGAGCTTCGAAAAAAAGACTATAGCATTATGGCATAGTTTGGCAGCAAACTATGGAGTTTTTATCGCTAACGATAGTTGAGGCAAGGATTCAAATTCTGCTTTTCCAAAAAAAAAAAAAAAATCTCCAGACTTGGCTAGAAGTGGCCAATTACTGGTCAAATATAAGCCATACCTTTTTGTCCCGGCTTTTCTTTTGAATAACGACATCTAATAACAAATACAGAAATAACATATTCTTTCTGGTATTTTCTGCTCATGGAACGGTGGTATCGACCTCTCTTAATATGTGCAGGCAACATTACTGGTACTATAGTAGTATTACTGGAAGAATTTCCAATGTACGTTCACCAAAAAAATGTGCAGATGTGCTTTAATTTGAATGGTAACTTTAGGAAAGGCCATCTATGTAGCTGCAATGATACTGTCAACAGTAAAAGAAACAAGTGTGGCACAGGAAAGTTAATTCAGCAAAAATATCCTTTAGATGTGGCAACTATCACACCATGATTACTAAACAACATCTAGTGAGTATAAAAAGGTAGGTGCTTGCCGTAATCTCACCAATAATTTCTTGCACTTCATCAAGCCGCACTCTCACTTTCAACTTTTATTGATTCAAACAACTCGGTGACATCAGGATGCTTGCGGATATGGAAAGGGCATTTATACAGTAAATCCTGAGCTTCTGAATATCTTCCCTCTGTGAAAAATGACTTGAAAACATGCAGATAGGCAGTGGGTGATGGGTACTTGTTATTCACCGTCAAGGCCTTGAGAAACTGCCTTGCATCATCAAATGTCCCGTACTTGGCGATGTGAGTAGGGAATGGGTCTGCAAAAGGTGGGAACTTGCGTGCTTTCATTGATCTCAGGAGACCCAGAGCCTCCTCAAGTTTCTTTACCCTCAGCAATTCACCAATTATATGCTTGTAAGTGCCTTGCCAAGGGCTCAAGTTGGCCTTGTCTACCATCTCAACAAAGAAAGCATACGACGCATCAATCTTATCATCGCTACAGAGACCTTTCACCATTACATCCAACAAAGCCGCATCTGCCTCCAAATTCTTCTCAACCATTTCCGTGAAGTACTGCAGGGCCTTTTCCACCTCCCCAGCCGCACAGTGACCTTGGATCAACATGGTCCAAGTCTTTAAGTCGGGGACACACCCTTCAGCCTCCATTTCATCAAGCGCTTTGCGAGCTTCATCAAACCTGTTTGCCTTGCAGAGCCCAAAGATCAGTTGGCTATACGTAATATTGTCTGGCTGATGACCTTCGCCTTTCATCCTCTTCACGATCTCGGCAGCCTCATCAAACCTCCCATTACTCGTCAGCGCCCTATGGATGCCATCAAAAACATCCTTAGTCTTGAACTCCCACACCGCCTCGAACTTCCTAACCACACGATAGACCAGCTCAAGGTCCGGCGAAGGCCCCAGAGCAATGCGCCTGATGAGCACCGGACCATCCTGCTTCGATGGCTTGTAAGGACCATCCATCATGAGCTCATAGAGCTCCACGGCCTCCGTGAGCATGTGGCGCTTCTGGAACTGCCTCGAGAGCTTCACATAGGTGTCGATATCGACATGAATCCCGTCGGCCTTCATCTCTTGGATGAGGTCCCAGAACTCCCGCATGGACTCCTCTCGCCCGAGCACCCTCACCATGGCATTGTAAGACACCGAACCGTGCTTGTACCCAATCTGACGCCCCGCCCACCTGAAGAAGGCTAGAGCCTTGATCGGATGGTCCCTCACCTCCCGGAGCACCCTGGCCACGGCGGTCTCCGTTAGCGGCAGGTCGACGCCCTCCAGCTTCTCGTCGAGCTCCGCGCTAGCATCCGAATCCGAGCCATCCTCGAGGGCACGGACGGCGTCGGCGGCGGCGGAGGTGGGGGTCCCACCCTTGGCGTCCTCCTGGGCCTTGGCGTAGTGGGCGGTGAGGGAGGCGTAGTCGGCGGTGAGGCTGGCCTTCTTGAAGGAGGCGAGGGCGGCGAGGTAGGTGCCCTGGTCGATGGAGTGGCCGGCGTCGTTCATGTCGCGGAGGAAGGGCCAGAAGTGGGAGTGCGCGGAGGTGGGGTGGGAGGCGAGGGTGCGGAGCATGAGGTTGTAGGCGGCGGATCCCAGCGGGTGGCCGCCGGCCTGGGAGCGGCGGAAGAAGGCGAGCGCGACGGAGGGGTCCTTGGAGAGGGTGCGGAGGGAGTAGAGGACGGATTCCGGGGTCGGGGCGGTGGCGGTGGCGGCGGCGGTGGAGAAGAGGCGGCGGAGGCGGGAGAAGGCGGTGGGCGGCGGCGGCGGCGCCATCTCTCTCTCAGTTGGGGTTTCTCTAGGGCTTTTGGTTACTCAAGGTGCTCGAC

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CDS seq

ATGGCGCCGCCGCCGCCGCCCACCGCCTTCTCCCGCCTCCGCCGCCTCTTCTCCACCGCCGCCGCCACCGCCACCGCCCCGACCCCGGAATCCGTCCTCTACTCCCTCCGCACCCTCTCCAAGGACCCCTCCGTCGCGCTCGCCTTCTTCCGCCGCTCCCAGGCCGGCGGCCACCCGCTGGGATCCGCCGCCTACAACCTCATGCTCCGCACCCTCGCCTCCCACCCCACCTCCGCGCACTCCCACTTCTGGCCCTTCCTCCGCGACATGAACGACGCCGGCCACTCCATCGACCAGGGCACCTACCTCGCCGCCCTCGCCTCCTTCAAGAAGGCCAGCCTCACCGCCGACTACGCCTCCCTCACCGCCCACTACGCCAAGGCCCAGGAGGACGCCAAGGGTGGGACCCCCACCTCCGCCGCCGCCGACGCCGTCCGTGCCCTCGAGGATGGCTCGGATTCGGATGCTAGCGCGGAGCTCGACGAGAAGCTGGAGGGCGTCGACCTGCCGCTAACGGAGACCGCCGTGGCCAGGGTGCTCCGGGAGGTGAGGGACCATCCGATCAAGGCTCTAGCCTTCTTCAGGTGGGCGGGGCGTCAGATTGGGTACAAGCACGGTTCGGTGTCTTACAATGCCATGGTGAGGGTGCTCGGGCGAGAGGAGTCCATGCGGGAGTTCTGGGACCTCATCCAAGAGATGAAGGCCGACGGGATTCATGTCGATATCGACACCTATGTGAAGCTCTCGAGGCAGTTCCAGAAGCGCCACATGCTCACGGAGGCCGTGGAGCTCTATGAGCTCATGATGGATGGTCCTTACAAGCCATCGAAGCAGGATGGTCCGGTGCTCATCAGGCGCATTGCTCTGGGGCCTTCGCCGGACCTTGAGCTGGTCTATCGTGTGGTTAGGAAGTTCGAGGCGGTGTGGGAGTTCAAGACTAAGGATGTTTTTGATGGCATCCATAGGGCGCTGACGAGTAATGGGAGGTTTGATGAGGCTGCCGAGATCGTGAAGAGGATGAAAGGCGAAGGTCATCAGCCAGACAATATTACGTATAGCCAACTGATCTTTGGGCTCTGCAAGGCAAACAGGTTTGATGAAGCTCGCAAAGCGCTTGATGAAATGGAGGCTGAAGGGTGTGTCCCCGACTTAAAGACTTGGACCATGTTGATCCAAGGTCACTGTGCGGCTGGGGAGGTGGAAAAGGCCCTGCAGTACTTCACGGAAATGGTTGAGAAGAATTTGGAGGCAGATGCGGCTTTGTTGGATGTAATGGTGAAAGGTCTCTGTAGCGATGATAAGATTGATGCGTCGTATGCTTTCTTTGTTGAGATGGTAGACAAGGCCAACTTGAGCCCTTGGCAAGGCACTTACAAGCATATAATTGGTGAATTGCTGAGGGTAAAGAAACTTGAGGAGGCTCTGGGTCTCCTGAGATCAATGAAAGCACGCAAGTTCCCACCTTTTGCAGACCCATTCCCTACTCACATCGCCAAGTACGGGACATTTGATGATGCAAGGCAGTTTCTCAAGGCCTTGACGGTGAATAACAAGTACCCATCACCCACTGCCTATCTGCATGTTTTCAAGTCATTTTTCACAGAGGGAAGATATTCAGAAGCTCAGGATTTACTGTATAAATGCCCTTTCCATATCCGCAAGCATCCTGATGTCACCGAGTTGTTTGAATCAATAAAAGTTGAAAGTGAGAGTGCGGCTTGA

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Protein seq

MAPPPPPTAFSRLRRLFSTAAATATAPTPESVLYSLRTLSKDPSVALAFFRRSQAGGHPLGSAAYNLMLRTLASHPTSAHSHFWPFLRDMNDAGHSIDQGTYLAALASFKKASLTADYASLTAHYAKAQEDAKGGTPTSAAADAVRALEDGSDSDASAELDEKLEGVDLPLTETAVARVLREVRDHPIKALAFFRWAGRQIGYKHGSVSYNAMVRVLGREESMREFWDLIQEMKADGIHVDIDTYVKLSRQFQKRHMLTEAVELYELMMDGPYKPSKQDGPVLIRRIALGPSPDLELVYRVVRKFEAVWEFKTKDVFDGIHRALTSNGRFDEAAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTWTMLIQGHCAAGEVEKALQYFTEMVEKNLEADAALLDVMVKGLCSDDKIDASYAFFVEMVDKANLSPWQGTYKHIIGELLRVKKLEEALGLLRSMKARKFPPFADPFPTHIAKYGTFDDARQFLKALTVNNKYPSPTAYLHVFKSFFTEGRYSEAQDLLYKCPFHIRKHPDVTELFESIKVESESAA

Function Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [UniProtKB/Swiss-Prot:Q9STK5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsIR64_01g0047010 OsIR64_01g0047010.01 Chr01 43962133 43967168 - NAM
CDS seq

ATGGCGCCGCCGCCGCCGCCCACCGCCTTCTCCCGCCTCCGCCGCCTCTTCTCCACCGCCGCCGCCACCGCCACCGCCCCGACCCCGGAATCCGTCCTCTACTCCCTCCGCACCCTCTCCAAGGACCCCTCCGTCGCGCTCGCCTTCTTCCGCCGCTCCCAGGCCGGCGGCCACCCGCTGGGATCCGCCGCCTACAACCTCATGCTCCGCACCCTCGCCTCCCACCCCACCTCCGCGCACTCCCACTTCTGGCCCTTCCTCCGCGACATGAACGACGCCGGCCACTCCATCGACCAGGGCACCTACCTCGCCGCCCTCGCCTCCTTCAAGAAGGCCAGCCTCACCGCCGACTACGCCTCCCTCACCGCCCACTACGCCAAGGCCCAGGAGGACGCCAAGGGTGGGACCCCCACCTCCGCCGCCGCCGACGCCGTCCGTGCCCTCGAGGATGGCTCGGATTCGGATGCTAGCGCGGAGCTCGACGAGAAGCTGGAGGGCGTCGACCTGCCGCTAACGGAGACCGCCGTGGCCAGGGTGCTCCGGGAGGTGAGGGACCATCCGATCAAGGCTCTAGCCTTCTTCAGGTGGGCGGGGCGTCAGATTGGGTACAAGCACGGTTCGGTGTCTTACAATGCCATGGTGAGGGTGCTCGGGCGAGAGGAGTCCATGCGGGAGTTCTGGGACCTCATCCAAGAGATGAAGGCCGACGGGATTCATGTCGATATCGACACCTATGTGAAGCTCTCGAGGCAGTTCCAGAAGCGCCACATGCTCACGGAGGCCGTGGAGCTCTATGAGCTCATGATGGATGGTCCTTACAAGCCATCGAAGCAGGATGGTCCGGTGCTCATCAGGCGCATTGCTCTGGGGCCTTCGCCGGACCTTGAGCTGGTCTATCGTGTGGTTAGGAAGTTCGAGGCGGTGTGGGAGTTCAAGACTAAGGATGTTTTTGATGGCATCCATAGGGCGCTGACGAGTAATGGGAGGTTTGATGAGGCTGCCGAGATCGTGAAGAGGATGAAAGGCGAAGGTCATCAGCCAGACAATATTACGTATAGCCAACTGATCTTTGGGCTCTGCAAGGCAAACAGGTTTGATGAAGCTCGCAAAGCGCTTGATGAAATGGAGGCTGAAGGGTGTGTCCCCGACTTAAAGACTTGGACCATGTTGATCCAAGGTCACTGTGCGGCTGGGGAGGTGGAAAAGGCCCTGCAGTACTTCACGGAAATGGTTGAGAAGAATTTGGAGGCAGATGCGGCTTTGTTGGATGTAATGGTGAAAGGTCTCTGTAGCGATGATAAGATTGATGCGTCGTATGCTTTCTTTGTTGAGATGGTAGACAAGGCCAACTTGAGCCCTTGGCAAGGCACTTACAAGCATATAATTGGTGAATTGCTGAGGGTAAAGAAACTTGAGGAGGCTCTGGGTCTCCTGAGATCAATGAAAGCACGCAAGTTCCCACCTTTTGCAGACCCATTCCCTACTCACATCGCCAAGTACGGGACATTTGATGATGCAAGGCAGTTTCTCAAGGCCTTGACGGTGAATAACAAGTACCCATCACCCACTGCCTATCTGCATGTTTTCAAGTCATTTTTCACAGAGGGAAGATATTCAGAAGCTCAGGATTTACTGTATAAATGCCCTTTCCATATCCGCAAGCATCCTGATGTCACCGAGTTGTTTGAATCAATAAAAGTTGAAAGTGAGAGTGCGGCTTGA

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Protein seq

MAPPPPPTAFSRLRRLFSTAAATATAPTPESVLYSLRTLSKDPSVALAFFRRSQAGGHPLGSAAYNLMLRTLASHPTSAHSHFWPFLRDMNDAGHSIDQGTYLAALASFKKASLTADYASLTAHYAKAQEDAKGGTPTSAAADAVRALEDGSDSDASAELDEKLEGVDLPLTETAVARVLREVRDHPIKALAFFRWAGRQIGYKHGSVSYNAMVRVLGREESMREFWDLIQEMKADGIHVDIDTYVKLSRQFQKRHMLTEAVELYELMMDGPYKPSKQDGPVLIRRIALGPSPDLELVYRVVRKFEAVWEFKTKDVFDGIHRALTSNGRFDEAAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTWTMLIQGHCAAGEVEKALQYFTEMVEKNLEADAALLDVMVKGLCSDDKIDASYAFFVEMVDKANLSPWQGTYKHIIGELLRVKKLEEALGLLRSMKARKFPPFADPFPTHIAKYGTFDDARQFLKALTVNNKYPSPTAYLHVFKSFFTEGRYSEAQDLLYKCPFHIRKHPDVTELFESIKVESESAA

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.336688 0.230790 0.501966

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0970900 RBH 2.195400 3.299183 2.554726
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g73950 RBH 1.472819 2.204170 0.652497
Nipponbare | IRGSP 1.0 | RAP-db Os01g0970900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0048580 RBH 0.123414 3.405683 3.002828
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0048070 RBH 0.219839 2.298841 2.052095
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0048460 RBH 0.981365 6.916632 6.366072
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0048000 RBH 0.284202 0.278208 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0047540 RBH 1.097320 6.021354 8.347736
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0704600 RBH 2.899381 5.425348 2.023723
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0000950 SBH 0.0 0.0 0.146662
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0705400 RBH 2.0249915 3.7019985 11.1206575
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0047680 RBH 0.180284 0.158655 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0047470 RBH 0.352026 10.506351 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0047780 RBH 0.000000 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0047740 RBH 0.320886 0.718405 0.720045
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0047490 RBH 0.000000 0.605533 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G047820 RBH 0.396567 3.588328 0.935275
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0047570 RBH 1.243272 8.627350 2.931453
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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