Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0047380 | OGI:01041690 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:44371514-44374424 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caatcaaagagcaagggaaaaaaagatgacagaaaatcagtataattctatctcttttttcatattgaacttcttgctgaatgttcttatatgaataaaagtatgattttgcagattagcattagttatcagctgaaaaatcaaaaatgggattttaggaagcaacaaggaagatctcaagcaaagataccttcagatataccacttcagtatggcatcgtagaggatcttgattctgaattgatatttgatttcaagaatgcagatgcaagtggacatcactgcatacaaattatgacagaatgctttcatgaaaacatattgcacgctccagttgttgaacataaaaatgaggaaggtccctattcaatttggcatgagccctacacaggcaatcttaagtcatatctggaatcaacttcattagggactaatatgatgcatgggagcaaagttatgctgccaacacctatgctacaaagtattataaggtttgcaatgtctttagccttacataatacatgatgaactgtaaactcatttaattatgttattgtttcagcaaaatttttgatggtatggagctgctgaggctgtgtggaaagtaccatgggaatttttctctggagaatacatattatctcataaaggaacgtaaaattgttgtaaagcttgcaaactttaaaaagaaaggtgagaaaaatctattgattatgtcaacaaatcgccatgtggatagaaacaaattagggatatgtaagcacattatttagatggcttctgtaataaaatcaatatttaatttcagagacgaagagctctacccgagtataccaggctgaggacttccaagctattggtgtcgcactgcaggagatctcgaaattcgctaaagaacataaatattatcgttttgactgcagtcaaattgatgatcttgctgaagatctcagagagtttgctttgtaagtatgtagtgacctaaactacagagtaaataatttcagtatatgttctgatgtatgctaaaattatgccgtagttgtgtcacaaatattgagatgtccaagtaagctgtgtctattgtaaaccaattcgtgatggcaagtctcggaatcttggtgtttttggttaaacaatactgtcatatttcttttttctgtagaatggagtgatgatcgtgtaatttggatggtcttgagtcacacgttttcaatttggctaggcagtttttgtttttgttcccacttcatcaatggtcaagcaggtttttgctaagcagttcatattcagaaatagcgtcttgcatgattccttgtggctgccataaaaccatgaacaatgtaaatgatcattgcatcgaactgcatgggaggaaaacttgattcctcacaaggatacctctgaactcaattcgtaagattgcgagtagatttttaatttttcttctggcataggctggttaatctagccttttagatctcggaacatttcaataccagtgcaattgaagaactaatgacataaatagtttaacaatgttttttatactattactaagtatgcacctgcaatgagaatactttctagaaattgagagtataataactttgtctaaagagataaattcatgattcattgtgctacattgtctgttacgtagtggacagttagattctatcaaggaaaagatcagaaggcatcctttcttctgggattatgataaaaggaagttccttctcatttctgaagttccactggccatgatcagtgcatcattccgatcgaagattcaggaatgtaaagatttgtgtattgtcccttggggtaaagatgactatgacgggttaattgagttgatggatggctaccgagttgataagagcatgcctaaatttgataagaagagcagagttgattatgtcctatgtataagtgggatgtacgcccatgagaaggaattgaaggtattatgttttgttaattaccttctgttacatgtttgaagtaaataaagttaacttttgttaatttctgcttacatgtttgcagtaaataaagttaacttattactgtaaattacaggcacaagttaaagtcgatagggtcatcatggaaagaaatcccgggctattcttacttctgaattctttgttgccaagctcttgaagacttcaatgcaagcgataatcaattttttgaaggtaatgccatgtagcattgcacgtttcttacccaaacttgcaacctgtctacgctttagccattttagctactgctgcaatctttttaaaggacataactttttagaggaattactacagtcattgaagtgttcttttagttgatttagctgttacacatgttaaatgatctgttcttggatcattgcttgattaggttgttttgtgggcatgcgttgtctaatggatctttttctagatgactgttgagtgacttggccaggtctaggctgaaagagtgcagagagacaggtaattgacgacctgcttgattatatttcttaggttgttttgcaggcatgcaattatctaggatgaaagagtgcagagagacggggaggtggtgaggagaaggtggacagggagctttagatcagtgtcttgacaatgctgagaacatgtagctgtcctgcctcatttcttaggaatgtttttctctgagtacttgctcagcagggggaaacccagaacacagccatctatttgtgctttgaaggggatgggataattggatgcaaccctgtgcagagatttgtggggatgtttggctgactattttgcctaggcaacggtagtgtttgagtatggggtaaatatgttaggtggataatttgttggtttgctatcttgtgaagtgggggtttaggattttgagagttccttttttt
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| CDS seq | atgacagaatgctttcatgaaaacatattgcacgctccagttgttgaacataaaaatgaggaaggtccctattcaatttggcatgagccctacacaggcaatcttaagtcatatctggaatcaacttcattagggactaatatgatgcatgggagcaaagttatgctgccaacacctatgctacaaagtattataagcaaaatttttgatggtatggagctgctgaggctgtgtggaaagtaccatgggaatttttctctggagaatacatattatctcataaaggaacgtaaaattgttgtaaagcttgcaaactttaaaaagaaagagacgaagagctctacccgagtataccaggctgaggacttccaagctattggtgtcgcactgcaggagatctcgaaattcgctaaagaacataaatattatcgttttgactgcagtcaaattgatgatcttgctgaagatctcagagagtttgcttttggacagttagattctatcaaggaaaagatcagaaggcatcctttcttctgggattatgataaaaggaagttccttctcatttctgaagttccactggccatgatcagtgcatcattccgatcgaagattcaggaatgtaaagatttgtgtattgtcccttggggtaaagatgactatgacgggttaattgagttgatggatggctaccgagttgataagagcatgcctaaatttgataagaagagcagagttgattatgtcctatgtataagtgggatgtacgcccatgagaaggaattgaaggcacaagttaaagtcgatagggtcatcatggaaagaaatcccgggctattcttacttctgaattctttgttgccaagctcttga
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| Protein seq | MTECFHENILHAPVVEHKNEEGPYSIWHEPYTGNLKSYLESTSLGTNMMHGSKVMLPTPMLQSIISKIFDGMELLRLCGKYHGNFSLENTYYLIKERKIVVKLANFKKKETKSSTRVYQAEDFQAIGVALQEISKFAKEHKYYRFDCSQIDDLAEDLREFAFGQLDSIKEKIRRHPFFWDYDKRKFLLISEVPLAMISASFRSKIQECKDLCIVPWGKDDYDGLIELMDGYRVDKSMPKFDKKSRVDYVLCISGMYAHEKELKAQVKVDRVIMERNPGLFLLLNSLLPSS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0047380 | OsLima_01g0047380.01 | Chr01 | 44371514 | 44374424 | + | NAM | ||
| CDS seq | atgacagaatgctttcatgaaaacatattgcacgctccagttgttgaacataaaaatgaggaaggtccctattcaatttggcatgagccctacacaggcaatcttaagtcatatctggaatcaacttcattagggactaatatgatgcatgggagcaaagttatgctgccaacacctatgctacaaagtattataagcaaaatttttgatggtatggagctgctgaggctgtgtggaaagtaccatgggaatttttctctggagaatacatattatctcataaaggaacgtaaaattgttgtaaagcttgcaaactttaaaaagaaagagacgaagagctctacccgagtataccaggctgaggacttccaagctattggtgtcgcactgcaggagatctcgaaattcgctaaagaacataaatattatcgttttgactgcagtcaaattgatgatcttgctgaagatctcagagagtttgcttttggacagttagattctatcaaggaaaagatcagaaggcatcctttcttctgggattatgataaaaggaagttccttctcatttctgaagttccactggccatgatcagtgcatcattccgatcgaagattcaggaatgtaaagatttgtgtattgtcccttggggtaaagatgactatgacgggttaattgagttgatggatggctaccgagttgataagagcatgcctaaatttgataagaagagcagagttgattatgtcctatgtataagtgggatgtacgcccatgagaaggaattgaaggcacaagttaaagtcgatagggtcatcatggaaagaaatcccgggctattcttacttctgaattctttgttgccaagctcttga
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| Protein seq | MTECFHENILHAPVVEHKNEEGPYSIWHEPYTGNLKSYLESTSLGTNMMHGSKVMLPTPMLQSIISKIFDGMELLRLCGKYHGNFSLENTYYLIKERKIVVKLANFKKKETKSSTRVYQAEDFQAIGVALQEISKFAKEHKYYRFDCSQIDDLAEDLREFAFGQLDSIKEKIRRHPFFWDYDKRKFLLISEVPLAMISASFRSKIQECKDLCIVPWGKDDYDGLIELMDGYRVDKSMPKFDKKSRVDYVLCISGMYAHEKELKAQVKVDRVIMERNPGLFLLLNSLLPSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0967600 | SBH | 3.790081 | 4.229774 | 4.127142 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g73656 | SBH | 2.567643 | 2.844867 | 1.085338 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0967600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0048340 | SBH | 1.127091 | 12.985770 | 7.014198 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0048010 | SBH | 0.0 | 0.0 | 2.318265 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047490 | SBH | 0.0 | 0.0 | 1.216118 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0047750 | SBH | 0.439678 | 0.131857 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0047320 | RBH | 3.042001 | 25.018606 | 18.144726 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0701600 | RBH | 8.6256405 | 16.3441695 | 13.5683895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0046790 | RBH | 0.253716 | 0.285331 | 1.558302 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0702300 | SBH | 3.1227425 | 3.093187 | 9.053113 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0047440 | RBH | 0.151204 | 0.086916 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0047250 | RBH | 0.637137 | 19.347490 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0047540 | RBH | 0.786986 | 21.650614 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0047530 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0047270 | RBH | 0.195920 | 3.778079 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G047600 | SBH | 0.780604 | 2.621839 | 4.433805 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0047340 | SBH | 3.385850 | 14.500470 | 6.372966 |
