Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0047490 | OGI:01123570 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:43289479-43296351 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaaaaagaaaaaagacaccgcctccgttctctccgctctccctcttcccctcgtcggctcctctgacaaaccccagcaggagtacggcaccgccctcccgcccgtccgtcgccggcgaaactaggtcgtaacttcccagccgagcaggtgagatccatcggccccgcacctgttcgttttatacattctcctcccttccacgcgctgatcgtgctagtgctcgtgctcgtgcccagcccatctcgggtaggaggagctcagcgccgtcgacgctccccggcgggcttcaatttcggtcgccggcgacaagtactacagtgtaagaagcatgcattctcccgtcctttctttgttcagatgctgtttgcggtgtcgcgttgttctacgccgactgcaccagattgcttctctcatctatctctgtattaacctctatttgtttcgttgctctgttatggggggatttaactatctgtcactatctccaaatattaactcttagattagatccgtcctggtaaaattgccactaaagatattatatgcactaatgttttgccacttttgacaccgtggagcgccagcacctaggatggacagcatggacatggtagttgcaatgaccaatttccccctctgtttttctagtgctaactgctaaacagaacccaaccattcgtgtgagcagaaaaattcaagataacactactgacaatcagaaagattgttgcactattccaacctctccacaaaagagataagaaagctccacacagaaaaaaccatggggggtactgtggcagaacatcgcatatcccttattcagatgatagtttcagtggctttgcattcttctgtcaaatagacttgttcaatttttaacatgcctattaaatctgcagaatacagctgtggcactgaatatatggacttctctgtagtgttgaactaatttcacatggttttaacatgcctattaaatctgctatatatgtttctatcattttgccagaattttttttgtcgaaatatagctgcactgttctgtcttcatcaccagagaaatggaggggcggattggtcaactgccttgtccatgctggccatcctaggtggcactccacagtggcaaaatattagtgcataatatctcaccagtggcaaaaattacaaggacaaacctaagagtggcatttagagagttgccacttctaatagtgacaaatattcaaccccccccccggccccacgcgttcttcatctgttatgaagtggtattaattgattagtttgtactactagtaagatatttagagttgtatattacatgctgttaatctcacagaatgtgtgttggcttctgctcaaagtttcactttgcattgtcgtcttcttctcaagcctccatttcctcttgtttgctcgttctttcctggatgtattgggtattcctttttctgtgacttccagaattctggtcctgtgggctcaaccatgccgtgctgtcttgggctatgcgctcgtggcagcctcttttgcagcactagatttatggttcactgctctgtaaagagtagtagcttctgggaatttaatagtaggagtaactttacttggttggtcagtctccacacgatccataaactaatcagagcccaaatgatggtcaaatcccagggagagaattagagaaacattcaccttctcaactcagttcctggctagaagtcaccgcatcactggagccatatctccatatcgacagcacggtttgcagccttgcaggtataagctgcaatgattgttgcaagcatgatccaagtgcttcttcaatccgagagtctagagacattacacgtgctgcacaggttgactcttttgctgataggtggtacgcttgaagtaccctggaaacctgtagttaacaggaagaatggaacattaggtaaaacatacaacaacttgttaatagatactccagatgatactgcataattgcaacaattcataggatagcttgtttgaatatgaaacaacttgtcaattgaacccttttgcgctataagatgcaagacattattactggtttgtagctgttatgtaacaaggacgggattcttggcttgtcgaattattgtgacaatgcaagcgaggaaagaaaaaagtatcatttatctccttttgttaagatgtgctattatttacccattgtatatatgtcagcaaacacaacttcttgcatactaaaatttgtttattgtacattgttggcagtaagctccttgatattctgataacaaacaaggcagctgcaaaggctatattcatcaaaatggacccaggtatgtaaatttccattcaacagttctctatattctcaatatcaatactagtttcatggctcatgagcatatggctgtacaatggctggccggcagcacatggcaacttctgtatgggcccatggtgctgatcaaaagcacactacacatgatattgatacctatagcctagttatatagttggaagatcgagatcgattaatgattttgctgttaggtttgagatctttgagttatttggttcttaggggctggccatatagaaatatgaggagcattcagcagtttatgtggggcaagcaagatgtatgaattaatctattctctcatataaaggtcttcatctcctcagtggttttctaagtagtatagtatctcatcttcttcgaagccatagcaagctaaaatgtatttaagttgtgccgattgtttaacagtattatatggatatctggcaagtagggcaagtaggatctgaaagtgaaatagtgaggtgttgcaggcttgctgtagcttcactatgtttccaacttgcttctagtaattcatttcagtcttgatggttaacattttactaaaacatatgccattctcattttctttttgctctagatcaagtggagattccctttaaagtgcttcaggagagagtccctggtaaaaagaagtattccttaagggttatcaaaccttcgtcctcaaagaagatatgcagaagcgttaacagttatccccttgtctgtctgaagagggagatggcagataatgatcatgtgcatcgcataatgcttacgctaaatcaccgaaacattctctcaatgaaagccctatccagggacaaggttgagagcaatggcccctcatccttagcagcatttgtagagccttacactggactgttatcatcactttgttttaaacatgattgctggggtgacagaataaaccacattccttcaccattactccagtccttattaaggtagcaataatccaattataaccgcaagtctgcaattataactgctgtgcatgtatcttatttgtttagttatttattttgtgctgaatcttttctcaggcaagtcattgaggggcttgacttcttgaggaagaacaaactgtatcatggtaatctcaattgggattcgattttgtatcttcaaccgtctaccgttaagcttgctaacttcagaaaacaaggtaaaacatatatagtgtaattgcaatctgatcactgatctcacttttacatgttttgtactatttatcactgtgtagcattcttaaattttgtgacatttactccttgaattacagagacaatgagcttggaggaagcccagtgggccgattggttgtgccttattaaaatgcttgaagaaattttagaaagagctgctgaaataagctcaaagcttgctcaatgtgatagatatttctgcggacatgttgaatctttgactgctctattgaaaaccctggataagtaagttaaaaacaatgcaacatctttagctgagatcagttttgtactgtagcactagtactttgatactgtagctgtagcagatcagttgagcctttgggttttgaattgttttataatgtagcagagtacttctttgatagtgtagtagatcacttgagcctttggattttgaattgttctatactgtagcagtactttgatattgtagcattataccgttgaacatagtgtagcggatcacttgagcatttggattttatgctctaatgcagagcatcattttcccaaaattttcaggactgcattgccggcaattaaagaaattgttcttgggcatcctcttttttgggatttgatgacgagggtaaacttctttgcaaaggatatatcacttaggttgaatgatgacacttttatgtcaagagtgagagcttcaaaaatccgtaagcttccttggaatgaaggaacaactcaagactttaaaggtctcctgtttgaaatggaaacctatcgtaaagatgaaggaattccagcatatgacttcagaagcttaaaagattatgtacgctgtgtctgtggtgcttatgctcactggaataaaataaaggtaatgttttttgacatgtattttgcatgtgttgaaagccaaatactccctccgtcccaaaatattgctacctagtactcgattagataccacctagtactatgaatctgtagtggtgtctaattgaatactagttcactatgttttgggatggatggaggttgtctgtactaagttctaacataaatatttgcagctaaatgttgacgacattgttcggcaaaaccatcctaccatatgcagtgatatctggcatcttcttggaagttcagacatgtcggtaagaaatattattaagggttaagtccgattttcaacatcactctgatattttcagcatacttaattccttttgcattttttattttttgctgttgcatgaattttgcagctttgcagcagatcatagcatgtaaaatctttcttattttattttatcttgtgttatatatattgtttcatgcagcatgctgattctaagaagccagttgaagagattaaattaatatctgatgtcgttagagattcaccacacaaggtaagttgccacagtctgagttgttttattctcatctctatgaaagatagctatatttctagagagagttggtaaaagaatatttacagatagaaatgcttgcttttctggcttaaatatttgatacatgcatatcatatgcctactgttattttgaactcaaatcttgtgtaatttggtagtagacatcgcaaaaaatgtgttacggttgaaagacactctaaaaagctggtaatttgctagaggacacttttggctcaattggagagagaaattcttcaaaaagacgagaatacccctagggacaaaagcttctaacctaggaatgcagtgaaagatggaatatgatgtatatatgctggcaatgtacatggggccatggtagatttagagttgcataattcccaaattttcactctaaacccacgtttgaaacctgggggccctaggggtattatcgtctatttgaagaatttctctctccaattaagctgaaagtgtcctctagctagttaccaataataatctatagcgtctttcagctacgacatgtgtttgcgatgcctaccaacaacttgcacaaattttaagtgtcatgtagcaaaatttgtctttgaactaatggaatacatatgggtttgattgtttaagaattttagtagctttcattggaaatctcactttttaactctgcagattttcatcgctggaattcctagagtgatttcatctaagatggtaatataacagcatccaccagtatatttgcataacctagtaatcttcgctctgcatgttgttattaaagctcttatccctgacaagttactgcattttcctctttcagctcagggatatagttagttcatttggtcaattggctgcttaccgctttctttttaatgaagaccttggtggagcatgcgcatttcttgaggtctggaaagccctgcttactcctaaactagagcatatggatatacctccaacaaactaatttctgatcaatttgatatgcacagtacattgatcactccattacatcaaaggcatgtgctggccttaacggcatgaagcttggtggatgcgtaataactgctgttggcgtgttaactgatcatcctgggcaggttcaaactttaagacattttggattcattcatttactgccttatacattttattgagttaaaccccactctgttcaggctggcaatgaagcttgcccatttcatggaattcctgccaatcccaaacctcttcttgcagtaccaacacaagtcctgcagctaaaaaatgtggtatgtcatagtgttaactctgttcataagtctctcccaatagatatctctcttcgtatcaaaatcatttagtcggtaaacagaacaaccaatttttttcacacttcttacatttataaagatgtgagttgtttacaaacttgcaataaatgtagtttgaccaggaggaatactcgctgctttcaaaatatgaggtagatgcagtattggaagatgtacgtgtgaagtgtgcaaggtatagaaataattctcttgcattcttgctgtattacttatcatgatggtttcagcttacattatggacaagattttgcaggtatggagctgtgaaatccataaatgtcgtagagtatcctgctggcagtgacaacaccaaggcacctgcagtagatgctagagacaacgctttggcttctaacaacactgcactcgaagctggctgtatacttgtagagttcttgtgcaaggaggcttcattcatggctgctcattcactccatggccggccttttggcagcaggattgtctctgcgggatatgctccatatgatctcttatctctaccggaggtatttccagtgttgagattctga
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| CDS seq | atggacccagatcaagtggagattccctttaaagtgcttcaggagagagtccctggtaaaaagaagtattccttaagggttatcaaaccttcgtcctcaaagaagatatgcagaagcgttaacagttatccccttgtctgtctgaagagggagatggcagataatgatcatgtgcatcgcataatgcttacgctaaatcaccgaaacattctctcaatgaaagccctatccagggacaaggttgagagcaatggcccctcatccttagcagcatttgtagagccttacactggactgttatcatcactttgttttaaacatgattgctggggtgacagaataaaccacattccttcaccattactccagtccttattaaggcaagtcattgaggggcttgacttcttgaggaagaacaaactgtatcatggtaatctcaattgggattcgattttgtatcttcaaccgtctaccgttaagcttgctaacttcagaaaacaagagacaatgagcttggaggaagcccagtgggccgattggttgtgccttattaaaatgcttgaagaaattttagaaagagctgctgaaataagctcaaagcttgctcaatgtgatagatatttctgcggacatgttgaatctttgactgctctattgaaaaccctggataagactgcattgccggcaattaaagaaattgttcttgggcatcctcttttttgggatttgatgacgagggtaaacttctttgcaaaggatatatcacttaggttgaatgatgacacttttatgtcaagagtgagagcttcaaaaatccgtaagcttccttggaatgaaggaacaactcaagactttaaaggtctcctgtttgaaatggaaacctatcgtaaagatgaaggaattccagcatatgacttcagaagcttaaaagattatcatgctgattctaagaagccagttgaagagattaaattaatatctgatgtcgttagagattcaccacacaagattttcatcgctggaattcctagagtgatttcatctaagatgctcagggatatagttagttcatttggtcaattggctgcttaccgctttctttttaatgaagaccttggtggagcatgcgcatttcttgagtacattgatcactccattacatcaaaggcatgtgctggccttaacggcatgaagcttggtggatgcgtaataactgctgttggcgtgttaactgatcatcctgggcaggctggcaatgaagcttgcccatttcatggaattcctgccaatcccaaacctcttcttgcagtaccaacacaagtcctgcagctaaaaaatgtgtttgaccaggaggaatactcgctgctttcaaaatatgaggtagatgcagtattggaagatgtacgtgtgaagtgtgcaaggtatggagctgtgaaatccataaatgtcgtagagtatcctgctggcagtgacaacaccaaggcacctgcagtagatgctagagacaacgctttggcttctaacaacactgcactcgaagctggctgtatacttgtagagttcttgtgcaaggaggcttcattcatggctgctcattcactccatggccggccttttggcagcaggattgtctctgcgggatatgctccatatgatctcttatctctaccggaggtatttccagtgttgagattctga
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| Protein seq | MDPDQVEIPFKVLQERVPGKKKYSLRVIKPSSSKKICRSVNSYPLVCLKREMADNDHVHRIMLTLNHRNILSMKALSRDKVESNGPSSLAAFVEPYTGLLSSLCFKHDCWGDRINHIPSPLLQSLLRQVIEGLDFLRKNKLYHGNLNWDSILYLQPSTVKLANFRKQETMSLEEAQWADWLCLIKMLEEILERAAEISSKLAQCDRYFCGHVESLTALLKTLDKTALPAIKEIVLGHPLFWDLMTRVNFFAKDISLRLNDDTFMSRVRASKIRKLPWNEGTTQDFKGLLFEMETYRKDEGIPAYDFRSLKDYHADSKKPVEEIKLISDVVRDSPHKIFIAGIPRVISSKMLRDIVSSFGQLAAYRFLFNEDLGGACAFLEYIDHSITSKACAGLNGMKLGGCVITAVGVLTDHPGQAGNEACPFHGIPANPKPLLAVPTQVLQLKNVFDQEEYSLLSKYEVDAVLEDVRVKCARYGAVKSINVVEYPAGSDNTKAPAVDARDNALASNNTALEAGCILVEFLCKEASFMAAHSLHGRPFGSRIVSAGYAPYDLLSLPEVFPVLRF |
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| Function | Splicing factor U2AF 65 kDa subunit [UniProtKB/Swiss-Prot:P90727] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0047490 | OsCMeo_01g0047490.01 | Chr01 | 43289479 | 43296351 | + | NAM | ||
| CDS seq | atggacccagatcaagtggagattccctttaaagtgcttcaggagagagtccctggtaaaaagaagtattccttaagggttatcaaaccttcgtcctcaaagaagatatgcagaagcgttaacagttatccccttgtctgtctgaagagggagatggcagataatgatcatgtgcatcgcataatgcttacgctaaatcaccgaaacattctctcaatgaaagccctatccagggacaaggttgagagcaatggcccctcatccttagcagcatttgtagagccttacactggactgttatcatcactttgttttaaacatgattgctggggtgacagaataaaccacattccttcaccattactccagtccttattaaggcaagtcattgaggggcttgacttcttgaggaagaacaaactgtatcatggtaatctcaattgggattcgattttgtatcttcaaccgtctaccgttaagcttgctaacttcagaaaacaagagacaatgagcttggaggaagcccagtgggccgattggttgtgccttattaaaatgcttgaagaaattttagaaagagctgctgaaataagctcaaagcttgctcaatgtgatagatatttctgcggacatgttgaatctttgactgctctattgaaaaccctggataagactgcattgccggcaattaaagaaattgttcttgggcatcctcttttttgggatttgatgacgagggtaaacttctttgcaaaggatatatcacttaggttgaatgatgacacttttatgtcaagagtgagagcttcaaaaatccgtaagcttccttggaatgaaggaacaactcaagactttaaaggtctcctgtttgaaatggaaacctatcgtaaagatgaaggaattccagcatatgacttcagaagcttaaaagattatcatgctgattctaagaagccagttgaagagattaaattaatatctgatgtcgttagagattcaccacacaagattttcatcgctggaattcctagagtgatttcatctaagatgctcagggatatagttagttcatttggtcaattggctgcttaccgctttctttttaatgaagaccttggtggagcatgcgcatttcttgagtacattgatcactccattacatcaaaggcatgtgctggccttaacggcatgaagcttggtggatgcgtaataactgctgttggcgtgttaactgatcatcctgggcaggctggcaatgaagcttgcccatttcatggaattcctgccaatcccaaacctcttcttgcagtaccaacacaagtcctgcagctaaaaaatgtgtttgaccaggaggaatactcgctgctttcaaaatatgaggtagatgcagtattggaagatgtacgtgtgaagtgtgcaaggtatggagctgtgaaatccataaatgtcgtagagtatcctgctggcagtgacaacaccaaggcacctgcagtagatgctagagacaacgctttggcttctaacaacactgcactcgaagctggctgtatacttgtagagttcttgtgcaaggaggcttcattcatggctgctcattcactccatggccggccttttggcagcaggattgtctctgcgggatatgctccatatgatctcttatctctaccggaggtatttccagtgttgagattctga
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| Protein seq | MDPDQVEIPFKVLQERVPGKKKYSLRVIKPSSSKKICRSVNSYPLVCLKREMADNDHVHRIMLTLNHRNILSMKALSRDKVESNGPSSLAAFVEPYTGLLSSLCFKHDCWGDRINHIPSPLLQSLLRQVIEGLDFLRKNKLYHGNLNWDSILYLQPSTVKLANFRKQETMSLEEAQWADWLCLIKMLEEILERAAEISSKLAQCDRYFCGHVESLTALLKTLDKTALPAIKEIVLGHPLFWDLMTRVNFFAKDISLRLNDDTFMSRVRASKIRKLPWNEGTTQDFKGLLFEMETYRKDEGIPAYDFRSLKDYHADSKKPVEEIKLISDVVRDSPHKIFIAGIPRVISSKMLRDIVSSFGQLAAYRFLFNEDLGGACAFLEYIDHSITSKACAGLNGMKLGGCVITAVGVLTDHPGQAGNEACPFHGIPANPKPLLAVPTQVLQLKNVFDQEEYSLLSKYEVDAVLEDVRVKCARYGAVKSINVVEYPAGSDNTKAPAVDARDNALASNNTALEAGCILVEFLCKEASFMAAHSLHGRPFGSRIVSAGYAPYDLLSLPEVFPVLRF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.216118 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0956600 | RBH | 0.000000 | 0.000000 | 1.028179 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72650 | RBH | 0.000000 | 0.000000 | 0.256666 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0956600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047530 | RBH | 0.0 | 0.000000 | 1.956381 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0048010 | RBH | 0.0 | 0.0 | 2.318265 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046890 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046420 | RBH | 0.274066 | 0.0 | 3.685725 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0691200 | RBH | 1.167454 | 0.310375 | 5.097988 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045930 | RBH | 0.0 | 0.0 | 0.061914 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0692400 | RBH | 1.4485865 | 0.066154 | 21.4211395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046520 | RBH | 0.041032 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046350 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046680 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046670 | RBH | 0.103449 | 0.0 | 0.176587 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046440 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046700 | RBH | 0.0 | 0.0 | 0.435773 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046490 | RBH | 0.0 | 0.0 | 0.683843 |
